Wall clock time and date at job start Tue Mar 31 2020 09:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.46925 * 2 1 4 4 C 1.50703 * 109.47368 * 120.00121 * 2 1 3 5 5 O 1.21275 * 120.00297 * 120.00193 * 4 2 1 6 6 N 1.34775 * 119.99698 * 300.00304 * 4 2 1 7 7 C 1.46499 * 119.99909 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.47119 * 179.97438 * 7 6 4 9 9 H 1.08998 * 109.50414 * 305.00428 * 8 7 6 10 10 C 1.53044 * 109.49732 * 184.93434 * 8 7 6 11 11 C 1.53045 * 109.53980 * 178.71578 * 10 8 7 12 12 C 1.53200 * 109.33478 * 61.31875 * 11 10 8 13 13 N 1.46924 * 108.77474 * 305.37928 * 12 11 10 14 14 C 1.36940 * 120.63055 * 233.62836 * 13 12 11 15 15 H 1.07999 * 119.99968 * 152.60286 * 14 13 12 16 16 C 1.38809 * 120.00071 * 332.60732 * 14 13 12 17 17 N 1.31617 * 120.00132 * 159.35677 * 16 14 13 18 18 Si 1.86806 * 119.99904 * 339.36042 * 16 14 13 19 19 H 1.48494 * 109.47074 * 92.90269 * 18 16 14 20 20 H 1.48501 * 109.46706 * 212.89869 * 18 16 14 21 21 H 1.48493 * 109.46910 * 332.89987 * 18 16 14 22 22 C 1.46929 * 118.74047 * 53.61065 * 13 12 11 23 23 C 1.52997 * 109.47508 * 240.00143 * 2 1 3 24 24 F 1.39907 * 109.47147 * 59.99658 * 23 2 1 25 25 F 1.39902 * 109.47276 * 300.00207 * 23 2 1 26 26 F 1.39902 * 109.47535 * 179.97438 * 23 2 1 27 27 H 1.08995 * 109.47374 * 299.99791 * 1 2 3 28 28 H 1.09006 * 109.47408 * 60.00114 * 1 2 3 29 29 H 1.09001 * 109.47136 * 179.97438 * 1 2 3 30 30 H 0.97001 * 120.00376 * 359.97438 * 6 4 2 31 31 H 1.08993 * 109.47221 * 300.00158 * 7 6 4 32 32 H 1.09001 * 109.46989 * 60.00359 * 7 6 4 33 33 H 1.08996 * 109.46002 * 298.70725 * 10 8 7 34 34 H 1.09004 * 109.45833 * 58.66666 * 10 8 7 35 35 H 1.09004 * 109.47215 * 301.37056 * 11 10 8 36 36 H 1.08994 * 109.49914 * 181.28754 * 11 10 8 37 37 H 1.08996 * 109.58130 * 185.59665 * 12 11 10 38 38 H 1.08994 * 109.69989 * 65.23977 * 12 11 10 39 39 H 0.97000 * 119.99788 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.58602 * 186.59512 * 22 13 12 41 41 H 1.09008 * 109.69900 * 66.24612 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2500 2.4545 7 6 2.1946 -0.9409 3.6507 8 6 1.6852 -0.2193 4.8999 9 1 1.9739 0.8309 4.8567 10 6 2.2934 -0.8654 6.1468 11 6 1.8096 -0.1241 7.3953 12 6 0.2843 -0.2311 7.4896 13 7 -0.3025 0.2555 6.2335 14 6 -1.2605 1.2339 6.2439 15 1 -1.3729 1.8887 5.3925 16 6 -2.0871 1.3842 7.3489 17 7 -2.7104 2.5251 7.5542 18 14 -2.3147 -0.0329 8.5446 19 1 -1.3320 0.0903 9.6510 20 1 -3.6918 0.0039 9.0993 21 1 -2.1015 -1.3192 7.8340 22 6 0.1585 -0.3273 4.9660 23 6 2.0400 -0.7212 -1.2492 24 9 1.5737 -0.0617 -2.3915 25 9 1.5737 -2.0402 -1.2493 26 9 3.4390 -0.7207 -1.2495 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.1493 0.5389 2.5436 31 1 1.8310 -1.9684 3.6505 32 1 3.2846 -0.9412 3.6509 33 1 1.9844 -1.9092 6.2023 34 1 3.3806 -0.8112 6.0903 35 1 2.0973 0.9252 7.3291 36 1 2.2611 -0.5704 8.2813 37 1 -0.0740 0.3772 8.3200 38 1 -0.0020 -1.2708 7.6480 39 1 -3.2883 2.6299 8.3262 40 1 -0.2829 0.2174 4.1315 41 1 -0.1362 -1.3756 4.9149 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359404092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:49 Heat of formation + Delta-G solvation = -181.596436 kcal Electronic energy + Delta-G solvation = -26500.349612 eV Core-core repulsion = 22193.354196 eV Total energy + Delta-G solvation = -4306.995416 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.23982 -47.76102 -47.64233 -40.10777 -38.20365 -35.15231 -34.38823 -33.02276 -30.99411 -30.72420 -26.70583 -26.25384 -25.35073 -23.52095 -22.06428 -21.52672 -20.57587 -19.48882 -18.85445 -18.60050 -17.82838 -16.95591 -16.65409 -15.90869 -15.54741 -15.36047 -14.89759 -14.61948 -14.35206 -14.10221 -13.96501 -13.93763 -13.82959 -13.78561 -13.54312 -13.43766 -13.26875 -12.92613 -12.65464 -12.55260 -12.30160 -12.14580 -11.76147 -11.66935 -11.55299 -10.87895 -10.68805 -10.62014 -10.25373 -10.13651 -9.91994 -9.72689 -9.50687 -9.18963 -8.68301 -7.05822 -6.02658 -3.38995 2.29733 2.35989 2.89979 3.27138 3.44089 3.46566 3.47480 3.80734 3.94130 4.45127 4.46701 4.53809 4.65754 4.72757 5.06248 5.13450 5.16269 5.19234 5.26877 5.34774 5.54255 5.67063 5.68812 5.72127 5.92989 6.02362 6.02818 6.19466 6.27417 6.32016 6.47055 6.48595 6.60959 6.64210 6.89215 7.24703 7.87245 7.91988 8.23817 8.85324 9.64258 10.01965 11.13097 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.023219 B = 0.003293 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.614249 B = 8499.882148 C = 9238.493027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.164 4.164 3 H 0.140 0.860 4 C 0.520 3.480 5 O -0.526 6.526 6 N -0.714 5.714 7 C 0.127 3.873 8 C -0.120 4.120 9 H 0.079 0.921 10 C -0.101 4.101 11 C -0.134 4.134 12 C 0.123 3.877 13 N -0.605 5.605 14 C -0.263 4.263 15 H 0.085 0.915 16 C 0.025 3.975 17 N -0.907 5.907 18 Si 0.883 3.117 19 H -0.288 1.288 20 H -0.303 1.303 21 H -0.271 1.271 22 C 0.156 3.844 23 C 0.473 3.527 24 F -0.182 7.182 25 F -0.172 7.172 26 F -0.175 7.175 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.406 0.594 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.263 0.737 40 H 0.059 0.941 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.539 -4.487 -13.558 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 H 0.157 0.843 4 C 0.304 3.696 5 O -0.402 6.402 6 N -0.366 5.366 7 C 0.004 3.996 8 C -0.140 4.140 9 H 0.097 0.903 10 C -0.139 4.139 11 C -0.173 4.173 12 C -0.002 4.002 13 N -0.329 5.329 14 C -0.391 4.391 15 H 0.102 0.898 16 C -0.174 4.174 17 N -0.550 5.550 18 Si 0.714 3.286 19 H -0.216 1.216 20 H -0.232 1.232 21 H -0.196 1.196 22 C 0.029 3.971 23 C 0.419 3.581 24 F -0.164 7.164 25 F -0.153 7.153 26 F -0.156 7.156 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.242 0.758 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 9.907 -5.117 -13.551 17.549 hybrid contribution -0.388 -0.349 0.640 0.826 sum 9.519 -5.466 -12.911 16.947 Atomic orbital electron populations 1.21878 0.88934 1.04962 1.05257 1.22655 1.01641 1.03033 0.91324 0.84264 1.19703 0.80815 0.84740 0.84350 1.90806 1.37335 1.25580 1.86503 1.45924 1.53244 1.32203 1.05182 1.21518 0.98877 0.96489 0.82747 1.21965 0.99207 1.00173 0.92704 0.90263 1.21345 0.98894 0.99354 0.94304 1.21991 0.98286 1.00582 0.96442 1.21361 0.91366 0.97310 0.90185 1.44323 1.44323 1.44328 0.99882 1.18877 1.08982 1.06497 1.04791 0.89760 1.25259 0.97224 0.96790 0.98112 1.69830 1.32879 1.22914 1.29373 0.86951 0.75957 0.84666 0.81046 1.21601 1.23153 1.19596 1.20927 0.90236 0.96422 0.89471 1.19773 0.75883 0.77911 0.84571 1.93185 1.88576 1.80861 1.53749 1.93208 1.88268 1.37156 1.96659 1.93214 1.29339 1.96361 1.96673 0.89215 0.89864 0.90432 0.75783 0.91184 0.91470 0.92275 0.92702 0.91692 0.92634 0.91000 0.95739 0.92705 0.92255 0.95796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.85 37.15 0.33 -0.80 16 2 C -0.16 -1.46 2.71 -91.78 -0.25 -1.71 16 3 H 0.14 0.86 8.14 -51.93 -0.42 0.43 16 4 C 0.52 6.22 6.92 -10.98 -0.08 6.14 16 5 O -0.53 -8.31 14.83 5.56 0.08 -8.23 16 6 N -0.71 -7.81 5.22 -60.30 -0.31 -8.13 16 7 C 0.13 1.56 5.07 -4.04 -0.02 1.54 16 8 C -0.12 -1.67 2.37 -90.50 -0.21 -1.89 16 9 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 10 C -0.10 -1.41 5.17 -26.68 -0.14 -1.54 16 11 C -0.13 -2.19 6.08 -26.60 -0.16 -2.35 16 12 C 0.12 2.55 4.21 -3.71 -0.02 2.53 16 13 N -0.61 -13.37 2.77 -172.32 -0.48 -13.84 16 14 C -0.26 -6.94 10.03 -15.06 -0.15 -7.09 16 15 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 16 C 0.03 0.71 5.23 -17.43 -0.09 0.61 16 17 N -0.91 -26.88 13.97 55.49 0.78 -26.11 16 18 Si 0.88 21.76 24.34 -169.99 -4.14 17.62 16 19 H -0.29 -6.86 6.62 56.52 0.37 -6.49 16 20 H -0.30 -7.65 7.11 56.52 0.40 -7.24 16 21 H -0.27 -6.58 6.63 56.52 0.37 -6.20 16 22 C 0.16 2.71 5.60 -3.71 -0.02 2.69 16 23 C 0.47 5.22 2.42 37.16 0.09 5.31 16 24 F -0.18 -1.83 16.80 2.25 0.04 -1.79 16 25 F -0.17 -2.21 15.88 2.25 0.04 -2.17 16 26 F -0.17 -2.22 16.40 2.25 0.04 -2.18 16 27 H 0.09 0.58 7.56 -51.93 -0.39 0.19 16 28 H 0.08 0.51 7.80 -51.93 -0.41 0.10 16 29 H 0.08 0.65 7.80 -51.93 -0.41 0.24 16 30 H 0.41 3.78 7.12 -40.82 -0.29 3.49 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.65 4.50 -51.93 -0.23 1.42 16 38 H 0.02 0.51 7.07 -51.93 -0.37 0.14 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.06 0.98 7.14 -51.93 -0.37 0.61 16 41 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 LS Contribution 333.87 15.07 5.03 5.03 Total: -1.00 -31.84 333.87 -5.53 -37.37 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.88 Total: -1.01 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -0.72 Total: 3.43 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.02 Total: -48.08 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.08 Total: -8.23 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.11 Total: -6.15 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.14 Total: 17.62 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.84 -5.53 -37.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359404092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.224 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds