Wall clock time and date at job start Tue Mar 31 2020 09:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47293 * 2 1 4 4 C 1.50709 * 109.46979 * 119.99631 * 2 1 3 5 5 O 1.21282 * 119.99413 * 120.00178 * 4 2 1 6 6 N 1.34773 * 120.00038 * 300.00224 * 4 2 1 7 7 C 1.46499 * 119.99912 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47336 * 179.97438 * 7 6 4 9 9 H 1.09004 * 109.49937 * 55.05865 * 8 7 6 10 10 C 1.53039 * 109.50197 * 175.15942 * 8 7 6 11 11 C 1.53040 * 109.54163 * 181.31613 * 10 8 7 12 12 C 1.53190 * 109.31125 * 298.63569 * 11 10 8 13 13 N 1.46925 * 108.77606 * 54.63500 * 12 11 10 14 14 C 1.36936 * 120.63255 * 126.37142 * 13 12 11 15 15 H 1.08000 * 119.99689 * 331.83729 * 14 13 12 16 16 C 1.38807 * 120.00266 * 151.84174 * 14 13 12 17 17 N 1.31618 * 120.00160 * 343.07748 * 16 14 13 18 18 Si 1.86804 * 119.99987 * 163.07983 * 16 14 13 19 19 H 1.48495 * 109.47300 * 59.99713 * 18 16 14 20 20 H 1.48498 * 109.47043 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46951 * 299.99671 * 18 16 14 22 22 C 1.46924 * 118.73966 * 306.38914 * 13 12 11 23 23 C 1.52994 * 109.47440 * 239.99793 * 2 1 3 24 24 F 1.39901 * 109.46951 * 300.00410 * 23 2 1 25 25 F 1.39901 * 109.47222 * 59.99584 * 23 2 1 26 26 F 1.39894 * 109.47406 * 179.97438 * 23 2 1 27 27 H 1.08999 * 109.47414 * 60.00267 * 1 2 3 28 28 H 1.08998 * 109.47281 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47192 * 300.00194 * 1 2 3 30 30 H 0.96998 * 119.99961 * 359.97438 * 6 4 2 31 31 H 1.09000 * 109.47224 * 59.99333 * 7 6 4 32 32 H 1.09003 * 109.46675 * 299.99640 * 7 6 4 33 33 H 1.09002 * 109.45589 * 301.34031 * 10 8 7 34 34 H 1.09002 * 109.46048 * 61.29199 * 10 8 7 35 35 H 1.08997 * 109.49849 * 178.68128 * 11 10 8 36 36 H 1.09002 * 109.52052 * 58.60536 * 11 10 8 37 37 H 1.08995 * 109.58651 * 294.84633 * 12 11 10 38 38 H 1.09004 * 109.69901 * 174.48985 * 12 11 10 39 39 H 0.96996 * 120.00545 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.58629 * 293.82739 * 22 13 12 41 41 H 1.08996 * 109.59159 * 173.39532 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1954 -0.9401 3.6508 8 6 1.6858 -0.2186 4.9000 9 1 0.5994 -0.1411 4.8577 10 6 2.0943 -1.0060 6.1472 11 6 1.5569 -0.3024 7.3955 12 6 2.1659 1.1001 7.4883 13 7 1.9014 1.8146 6.2320 14 6 1.2979 3.0438 6.2421 15 1 0.6217 3.3068 7.0421 16 6 1.5553 3.9517 5.2242 17 7 2.6029 3.7871 4.4447 18 14 0.4146 5.4074 4.9606 19 1 0.3865 6.2429 6.1879 20 1 0.9053 6.2204 3.8189 21 1 -0.9551 4.9158 4.6650 22 6 2.2963 1.1850 4.9646 23 6 2.0400 -0.7213 -1.2491 24 9 1.5736 -2.0402 -1.2491 25 9 1.5737 -0.0619 -2.3915 26 9 3.4390 -0.7207 -1.2494 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.1493 0.5390 2.5436 31 1 3.2854 -0.9398 3.6506 32 1 1.8324 -1.9679 3.6510 33 1 1.6815 -2.0133 6.0919 34 1 3.1815 -1.0618 6.2015 35 1 1.8281 -0.8762 8.2816 36 1 0.4716 -0.2244 7.3308 37 1 3.2417 1.0217 7.6445 38 1 1.7145 1.6425 8.3191 39 1 2.7826 4.4213 3.7332 40 1 3.3828 1.1135 4.9151 41 1 1.9289 1.7820 4.1299 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359404093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:53 Heat of formation + Delta-G solvation = -188.091632 kcal Electronic energy + Delta-G solvation = -26820.314157 eV Core-core repulsion = 22513.037088 eV Total energy + Delta-G solvation = -4307.277069 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.09471 -47.61670 -47.49307 -39.85564 -37.86421 -34.81637 -34.19173 -33.08149 -30.86448 -29.86881 -26.57372 -25.85552 -25.33918 -23.26912 -22.19010 -20.94904 -20.34997 -19.19830 -18.65613 -18.44554 -17.64005 -16.86448 -16.57001 -15.61160 -15.34274 -15.05022 -14.50825 -14.38206 -14.15552 -13.96101 -13.80440 -13.73450 -13.68328 -13.62963 -13.61274 -13.19894 -12.96531 -12.68774 -12.39241 -12.32845 -12.25602 -11.99761 -11.56245 -11.29902 -11.08049 -10.79164 -10.57115 -10.31697 -10.27157 -10.03146 -9.92654 -9.63807 -9.52347 -8.90897 -8.57234 -6.75560 -5.88484 -3.31276 2.52921 2.54118 3.12673 3.29647 3.36401 3.37345 3.62999 3.97284 4.13797 4.40211 4.64962 4.69519 4.86617 5.07522 5.24334 5.26843 5.38500 5.46971 5.49666 5.52700 5.72479 5.74582 5.88235 6.02147 6.20692 6.23337 6.31587 6.43131 6.56574 6.58065 6.74188 6.78407 6.94773 7.20719 7.49768 7.52983 7.69947 8.16708 8.34822 9.11646 9.74694 10.32408 11.19477 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.004355 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.619444 B = 6427.560249 C = 7822.111743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.165 4.165 3 H 0.142 0.858 4 C 0.521 3.479 5 O -0.531 6.531 6 N -0.708 5.708 7 C 0.130 3.870 8 C -0.128 4.128 9 H 0.070 0.930 10 C -0.100 4.100 11 C -0.133 4.133 12 C 0.143 3.857 13 N -0.592 5.592 14 C -0.253 4.253 15 H 0.065 0.935 16 C 0.003 3.997 17 N -0.903 5.903 18 Si 0.900 3.100 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.178 3.822 23 C 0.474 3.526 24 F -0.173 7.173 25 F -0.183 7.183 26 F -0.173 7.173 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.408 0.592 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.017 0.983 38 H 0.053 0.947 39 H 0.254 0.746 40 H 0.019 0.981 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.320 -8.290 -7.257 11.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.188 4.188 3 H 0.160 0.840 4 C 0.304 3.696 5 O -0.408 6.408 6 N -0.359 5.359 7 C 0.007 3.993 8 C -0.149 4.149 9 H 0.089 0.911 10 C -0.138 4.138 11 C -0.172 4.172 12 C 0.016 3.984 13 N -0.315 5.315 14 C -0.382 4.382 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.547 5.547 18 Si 0.730 3.270 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.052 3.948 23 C 0.419 3.581 24 F -0.155 7.155 25 F -0.165 7.165 26 F -0.154 7.154 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.244 0.756 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.737 -8.884 -7.459 12.187 hybrid contribution -0.646 1.189 -0.338 1.395 sum -4.383 -7.694 -7.796 11.798 Atomic orbital electron populations 1.21846 0.89346 1.04529 1.05068 1.22659 1.01346 1.03394 0.91408 0.84035 1.19648 0.80860 0.84683 0.84367 1.90786 1.37531 1.25904 1.86555 1.45895 1.52927 1.32014 1.05073 1.21471 0.99508 0.95280 0.83054 1.22158 1.01134 0.99430 0.92156 0.91133 1.21331 1.00496 0.97308 0.94703 1.21984 1.00632 0.98236 0.96336 1.20937 0.96502 0.90888 0.90023 1.44024 1.70183 1.17637 0.99617 1.19163 1.18911 0.90529 1.09615 0.91720 1.25036 0.96684 0.97383 1.00480 1.70030 1.25370 1.37639 1.21653 0.86408 0.80560 0.82444 0.77610 1.20833 1.21603 1.21043 1.20811 0.95739 0.87776 0.90459 1.19771 0.75986 0.77765 0.84542 1.93191 1.88308 1.37302 1.96677 1.93174 1.88604 1.80895 1.53818 1.93219 1.29211 1.96334 1.96654 0.89994 0.90663 0.89442 0.75646 0.91392 0.91996 0.93353 0.92415 0.93021 0.92417 0.96473 0.92881 0.93563 0.96250 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.85 37.16 0.33 -1.02 16 2 C -0.17 -1.91 2.71 -91.77 -0.25 -2.16 16 3 H 0.14 1.40 8.14 -51.93 -0.42 0.98 16 4 C 0.52 7.70 6.92 -10.98 -0.08 7.63 16 5 O -0.53 -9.66 14.83 5.56 0.08 -9.58 16 6 N -0.71 -10.17 5.22 -60.29 -0.31 -10.48 16 7 C 0.13 2.00 5.07 -4.04 -0.02 1.98 16 8 C -0.13 -2.14 2.38 -90.50 -0.21 -2.36 16 9 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 10 C -0.10 -1.55 5.17 -26.69 -0.14 -1.69 16 11 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 12 C 0.14 2.85 6.52 -3.71 -0.02 2.82 16 13 N -0.59 -13.89 2.99 -172.32 -0.52 -14.41 16 14 C -0.25 -6.53 9.58 -15.06 -0.14 -6.67 16 15 H 0.07 1.66 7.88 -52.49 -0.41 1.24 16 16 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 17 N -0.90 -24.41 11.20 55.49 0.62 -23.79 16 18 Si 0.90 20.34 29.59 -169.99 -5.03 15.31 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.18 3.82 4.39 -3.71 -0.02 3.81 16 23 C 0.47 6.19 2.42 37.15 0.09 6.28 16 24 F -0.17 -2.47 15.88 2.25 0.04 -2.43 16 25 F -0.18 -2.17 16.80 2.25 0.04 -2.13 16 26 F -0.17 -2.61 16.40 2.25 0.04 -2.57 16 27 H 0.08 0.62 7.80 -51.93 -0.41 0.21 16 28 H 0.07 0.69 7.80 -51.93 -0.41 0.28 16 29 H 0.09 0.71 7.56 -51.93 -0.39 0.32 16 30 H 0.41 5.49 7.11 -40.82 -0.29 5.20 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 39 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 2.00 5.26 -51.93 -0.27 1.73 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -29.81 340.31 -6.58 -36.39 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.95 Total: 2.29 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -0.71 Total: 6.28 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.21 Total: -48.68 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 0.11 Total: -7.14 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.81 -6.58 -36.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359404093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.702 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds