Wall clock time and date at job start Tue Mar 31 2020 09:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 5 5 C 1.46895 * 111.00399 * 299.30106 * 4 2 1 6 6 C 1.53240 * 109.34206 * 172.74811 * 5 4 2 7 7 N 1.47084 * 108.52060 * 53.82982 * 6 5 4 8 8 C 1.34776 * 120.87932 * 128.79360 * 7 6 5 9 9 O 1.21283 * 120.00179 * 180.02562 * 8 7 6 10 10 C 1.50701 * 120.00117 * 0.02562 * 8 7 6 11 11 C 1.53003 * 109.47128 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.46872 * 179.97438 * 11 10 8 13 13 H 1.07995 * 120.00286 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99649 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99763 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99917 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46838 * 90.00320 * 16 14 12 18 18 H 1.48492 * 109.47051 * 210.00205 * 16 14 12 19 19 H 1.48498 * 109.46980 * 330.00583 * 16 14 12 20 20 C 1.47076 * 118.23572 * 308.81364 * 7 6 5 21 21 C 1.46904 * 110.99835 * 175.00128 * 4 2 1 22 22 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 23 23 F 1.39898 * 109.46890 * 180.02562 * 22 2 1 24 24 F 1.39904 * 109.47059 * 299.99554 * 22 2 1 25 25 F 1.39895 * 109.47411 * 59.99812 * 22 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 28 28 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 29 29 H 1.08999 * 109.49091 * 292.70787 * 5 4 2 30 30 H 1.09002 * 109.49342 * 52.78509 * 5 4 2 31 31 H 1.08996 * 109.62808 * 294.11991 * 6 5 4 32 32 H 1.09006 * 109.62884 * 173.53901 * 6 5 4 33 33 H 1.09004 * 109.47144 * 299.99513 * 10 8 7 34 34 H 1.09001 * 109.47669 * 59.99615 * 10 8 7 35 35 H 1.09004 * 109.46650 * 299.99740 * 11 10 8 36 36 H 1.09001 * 109.47222 * 59.99266 * 11 10 8 37 37 H 0.96998 * 119.99277 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.63084 * 291.47520 * 20 7 6 39 39 H 1.09000 * 109.62544 * 170.89576 * 20 7 6 40 40 H 1.09002 * 109.49132 * 307.21197 * 21 4 2 41 41 H 1.08990 * 109.49680 * 67.26647 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 1.5623 -2.0882 -1.2251 6 6 1.9377 -2.7206 -2.5695 7 7 3.3805 -2.5348 -2.7865 8 6 4.1715 -3.5774 -3.1089 9 8 5.3593 -3.4061 -3.2838 10 6 3.5799 -4.9560 -3.2520 11 6 4.6843 -5.9493 -3.6191 12 6 4.0927 -7.3280 -3.7616 13 1 3.0351 -7.4807 -3.6055 14 6 4.9020 -8.3946 -4.0913 15 7 6.1901 -8.2088 -4.2810 16 14 4.1689 -10.1038 -4.2673 17 1 3.7388 -10.3156 -5.6728 18 1 5.1890 -11.1197 -3.9033 19 1 2.9962 -10.2346 -3.3657 20 6 3.9373 -1.1812 -2.6419 21 6 3.4832 -0.6095 -1.2946 22 6 2.0400 -0.7213 1.2492 23 9 3.4389 -0.7208 1.2495 24 9 1.5737 -0.0618 2.3915 25 9 1.5736 -2.0403 1.2492 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 2.0394 -2.6422 -0.4167 30 1 0.4801 -2.1188 -1.0983 31 1 1.3813 -2.2346 -3.3708 32 1 1.7043 -3.7853 -2.5512 33 1 3.1221 -5.2547 -2.3089 34 1 2.8232 -4.9472 -4.0365 35 1 5.1425 -5.6509 -4.5621 36 1 5.4407 -5.9581 -2.8344 37 1 6.7593 -8.9592 -4.5125 38 1 3.5731 -0.5472 -3.4503 39 1 5.0259 -1.2280 -2.6716 40 1 3.7941 0.4325 -1.2184 41 1 3.9335 -1.1836 -0.4850 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360336345.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:07 Heat of formation + Delta-G solvation = -174.193413 kcal Electronic energy + Delta-G solvation = -26922.393917 eV Core-core repulsion = 22615.719520 eV Total energy + Delta-G solvation = -4306.674397 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.55225 -48.02132 -47.97372 -40.05737 -38.30350 -35.26842 -33.52488 -32.13119 -31.19147 -30.66078 -27.38853 -26.35593 -25.40676 -23.90781 -22.38864 -21.67875 -20.77889 -19.00726 -18.80110 -18.74495 -17.45426 -16.93259 -16.25488 -15.72645 -15.57708 -15.45423 -15.18883 -14.83827 -14.73582 -14.52141 -14.40832 -14.28315 -14.10454 -13.86226 -13.59595 -13.24702 -13.19471 -12.76001 -12.49308 -12.31984 -12.08540 -12.01403 -11.86139 -11.47341 -11.21563 -11.19026 -11.00824 -10.92518 -10.57944 -9.95828 -9.61563 -9.17827 -9.03778 -8.98510 -8.38324 -8.29902 -5.95396 -3.99832 2.38740 2.99394 3.19750 3.33802 3.34232 3.40122 3.42562 3.43136 3.61632 3.88196 4.40319 4.47126 4.55035 4.58653 4.78551 5.02334 5.09017 5.14565 5.16543 5.25193 5.29304 5.39569 5.45803 5.49199 5.66839 5.71115 5.83241 5.94355 6.19357 6.21191 6.32908 6.47371 6.68895 6.90094 7.73156 7.75081 7.86684 8.07760 8.38846 8.72731 9.08520 9.63653 11.15596 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.022497 B = 0.003207 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.286640 B = 8729.015086 C = 9104.238950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 H 0.126 0.874 4 N -0.513 5.513 5 C 0.008 3.992 6 C 0.116 3.884 7 N -0.628 5.628 8 C 0.513 3.487 9 O -0.533 6.533 10 C -0.128 4.128 11 C 0.037 3.963 12 C -0.527 4.527 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.118 3.882 21 C 0.016 3.984 22 C 0.412 3.588 23 F -0.180 7.180 24 F -0.186 7.186 25 F -0.177 7.177 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.261 0.739 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.040 20.585 10.007 26.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.064 4.064 3 H 0.144 0.856 4 N -0.236 5.236 5 C -0.119 4.119 6 C -0.007 4.007 7 N -0.365 5.365 8 C 0.304 3.696 9 O -0.408 6.408 10 C -0.168 4.168 11 C 0.000 4.000 12 C -0.565 4.565 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.005 4.005 21 C -0.112 4.112 22 C 0.356 3.644 23 F -0.161 7.161 24 F -0.168 7.168 25 F -0.159 7.159 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.376 20.765 9.447 26.445 hybrid contribution 0.039 -1.389 0.910 1.661 sum -13.336 19.375 10.357 25.701 Atomic orbital electron populations 1.21946 0.90504 1.04198 1.04303 1.23253 0.99472 0.99868 0.83851 0.85601 1.62237 1.12237 1.15972 1.33148 1.23237 1.01964 0.87425 0.99311 1.21767 0.81210 1.01920 0.95853 1.48371 1.08424 1.07975 1.71743 1.21607 0.86564 0.86847 0.74589 1.90659 1.15830 1.85046 1.49258 1.21885 1.02247 0.90491 1.02194 1.18907 0.92103 0.91182 0.97857 1.21213 0.94516 0.92855 1.47934 0.92611 1.25028 0.94815 0.99106 0.95426 1.70002 1.04021 1.31318 1.47479 0.86591 0.78827 0.84191 0.78338 1.20661 1.21232 1.19882 1.21535 1.00433 0.83130 0.95389 1.23082 0.86161 1.02434 0.99506 1.22499 0.75856 0.78501 0.87571 1.93139 1.30254 1.96352 1.96404 1.93175 1.88395 1.80629 1.54613 1.93125 1.88389 1.37957 1.96406 0.90898 0.90726 0.89234 0.91444 0.88616 0.90862 0.88372 0.90339 0.90200 0.95813 0.95880 0.92953 0.91256 0.88484 0.89271 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 8.75 37.16 0.33 -0.48 16 2 C 0.05 0.33 2.65 -67.72 -0.18 0.15 16 3 H 0.13 0.68 8.07 -51.93 -0.42 0.26 16 4 N -0.51 -4.57 4.61 -226.35 -1.04 -5.61 16 5 C 0.01 0.08 4.25 -3.70 -0.02 0.06 16 6 C 0.12 1.31 6.50 -3.60 -0.02 1.29 16 7 N -0.63 -9.33 3.01 -172.46 -0.52 -9.85 16 8 C 0.51 10.14 7.71 -10.99 -0.08 10.06 16 9 O -0.53 -12.75 15.43 5.56 0.09 -12.66 16 10 C -0.13 -2.64 4.00 -27.88 -0.11 -2.75 16 11 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 12 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -27.59 13.29 55.43 0.74 -26.85 16 16 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.12 1.50 6.60 -3.60 -0.02 1.48 16 21 C 0.02 0.16 4.75 -3.70 -0.02 0.15 16 22 C 0.41 3.86 2.61 37.16 0.10 3.96 16 23 F -0.18 -2.00 13.93 2.25 0.03 -1.97 16 24 F -0.19 -1.75 16.80 2.25 0.04 -1.71 16 25 F -0.18 -1.89 13.21 2.25 0.03 -1.86 16 26 H 0.07 0.41 5.93 -51.93 -0.31 0.10 16 27 H 0.07 0.33 7.80 -51.93 -0.41 -0.07 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.78 5.61 -51.93 -0.29 0.49 16 30 H 0.10 0.73 5.97 -51.93 -0.31 0.42 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 1.10 6.02 -51.93 -0.31 0.78 16 33 H 0.08 1.48 7.66 -51.93 -0.40 1.08 16 34 H 0.08 1.49 8.00 -51.93 -0.42 1.07 16 35 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 1.41 7.06 -51.93 -0.37 1.04 16 40 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 41 H 0.07 0.81 5.59 -51.93 -0.29 0.52 16 LS Contribution 330.24 15.07 4.98 4.98 Total: -1.00 -34.24 330.24 -6.84 -41.08 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -5.58 Total: -3.33 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -0.56 Total: 1.10 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: -0.83 Total: -42.32 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.10 Total: -5.54 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.24 -6.84 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360336345.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.118 kcal (2) G-P(sol) polarization free energy of solvation -34.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds