Wall clock time and date at job start Tue Mar 31 2020 09:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.49466 * 2 1 4 4 C 1.53240 * 109.49596 * 239.93938 * 2 1 3 5 5 N 1.47077 * 108.52298 * 186.21232 * 4 2 1 6 6 C 1.34777 * 120.88126 * 231.18941 * 5 4 2 7 7 O 1.21286 * 119.99954 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00365 * 179.97438 * 6 5 4 9 9 C 1.52989 * 109.47392 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.47340 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99822 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00221 * 180.27698 * 10 9 8 13 13 N 1.31511 * 120.00039 * 359.71950 * 12 10 9 14 14 Si 1.86798 * 119.99820 * 179.72022 * 12 10 9 15 15 H 1.48500 * 109.47624 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47027 * 120.00000 * 14 12 10 17 17 H 1.48504 * 109.47095 * 239.99981 * 14 12 10 18 18 C 1.47079 * 118.23688 * 51.46016 * 5 4 2 19 19 C 1.53699 * 108.27475 * 308.47959 * 18 5 4 20 20 N 1.46899 * 109.25424 * 54.08618 * 19 18 5 21 21 C 1.46898 * 111.00023 * 172.60309 * 20 19 18 22 22 C 1.53002 * 109.47297 * 287.38878 * 21 20 19 23 23 F 1.39901 * 109.46985 * 66.23192 * 22 21 20 24 24 F 1.39897 * 109.47059 * 186.23310 * 22 21 20 25 25 F 1.39900 * 109.47155 * 306.23225 * 22 21 20 26 26 H 1.08994 * 109.47602 * 187.93235 * 1 2 3 27 27 H 1.08996 * 109.47097 * 307.93645 * 1 2 3 28 28 H 1.09002 * 109.46895 * 67.93345 * 1 2 3 29 29 H 1.09000 * 109.62189 * 66.50224 * 4 2 1 30 30 H 1.09004 * 109.62672 * 305.92434 * 4 2 1 31 31 H 1.09009 * 109.46422 * 59.99526 * 8 6 5 32 32 H 1.08999 * 109.46583 * 300.00052 * 8 6 5 33 33 H 1.09001 * 109.47653 * 60.00084 * 9 8 6 34 34 H 1.09005 * 109.47710 * 300.00004 * 9 8 6 35 35 H 0.97001 * 120.00273 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.63077 * 68.24973 * 18 5 4 37 37 H 1.09003 * 109.62334 * 188.83246 * 18 5 4 38 38 H 1.08995 * 109.64986 * 294.07906 * 19 18 5 39 39 H 1.09007 * 109.43811 * 173.95936 * 19 18 5 40 40 H 1.09007 * 109.47051 * 47.38392 * 21 20 19 41 41 H 1.09004 * 109.47199 * 167.38694 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0414 -0.7236 -1.2502 5 7 3.5042 -0.8431 -1.1554 6 6 4.2978 -0.4487 -2.1709 7 8 3.8074 0.0115 -3.1802 8 6 5.7944 -0.5796 -2.0524 9 6 6.4544 -0.0648 -3.3330 10 6 7.9510 -0.1963 -3.2147 11 1 8.3877 -0.6056 -2.3157 12 6 8.7631 0.2118 -4.2515 13 7 8.2313 0.7107 -5.3460 14 14 10.6185 0.0561 -4.1016 15 1 10.9610 -0.5317 -2.7815 16 1 11.1303 -0.8242 -5.1826 17 1 11.2393 1.3998 -4.2218 18 6 4.0778 -1.4099 0.0746 19 6 3.4866 -0.6538 1.2751 20 7 2.0202 -0.6940 1.1984 21 6 1.4139 -0.1362 2.4147 22 6 1.6002 -1.1177 3.5736 23 9 2.9608 -1.2220 3.8820 24 9 0.9023 -0.6542 4.6939 25 9 1.1080 -2.3741 3.2044 26 1 -0.3634 -1.0177 0.1418 27 1 -0.3633 0.6318 0.8105 28 1 -0.3633 0.3861 -0.9524 29 1 1.7777 -0.1500 -2.1388 30 1 1.5957 -1.7168 -1.3065 31 1 6.0568 -1.6272 -1.9044 32 1 6.1440 0.0061 -1.2022 33 1 6.1920 0.9827 -3.4814 34 1 6.1047 -0.6509 -4.1830 35 1 8.8026 0.9982 -6.0753 36 1 3.8242 -2.4677 0.1433 37 1 5.1612 -1.2902 0.0623 38 1 3.8235 0.3826 1.2575 39 1 3.8156 -1.1276 2.2000 40 1 1.8955 0.8106 2.6594 41 1 0.3498 0.0300 2.2469 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360393382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:47 Heat of formation + Delta-G solvation = -184.133035 kcal Electronic energy + Delta-G solvation = -26388.572339 eV Core-core repulsion = 22081.466927 eV Total energy + Delta-G solvation = -4307.105411 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.37977 -47.96536 -47.77033 -40.20006 -38.31023 -34.87332 -33.60019 -32.96099 -30.99675 -30.20063 -27.65176 -26.72719 -25.06304 -23.13889 -23.09784 -21.61766 -20.40304 -18.87943 -18.79868 -18.42069 -17.80731 -17.05799 -16.23326 -15.78985 -15.64966 -15.40371 -15.08672 -14.81071 -14.62530 -14.51063 -14.42738 -14.19031 -14.00332 -13.90836 -13.80904 -13.57998 -13.03730 -12.44435 -12.44199 -12.26544 -12.18813 -12.02448 -11.93947 -11.42018 -11.32201 -11.16954 -11.02100 -10.95544 -10.57664 -9.98556 -9.63838 -9.19534 -9.06186 -9.00563 -8.43602 -8.32565 -5.97332 -4.01761 2.37263 2.99334 3.16079 3.30345 3.31833 3.39259 3.42461 3.50868 3.69644 4.08176 4.43525 4.46784 4.55407 4.60185 4.74198 4.91530 4.96731 5.05379 5.19607 5.23195 5.37513 5.37797 5.45850 5.56014 5.67716 5.76087 5.78458 5.95090 6.16622 6.19088 6.32214 6.48857 6.65452 6.87638 7.69942 7.73336 7.84230 8.05535 8.36810 8.69308 9.06778 9.61971 11.13654 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.023369 B = 0.002980 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.899739 B = 9393.661236 C =10280.879073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.071 3.929 3 H 0.054 0.946 4 C 0.122 3.878 5 N -0.629 5.629 6 C 0.514 3.486 7 O -0.533 6.533 8 C -0.128 4.128 9 C 0.037 3.963 10 C -0.526 4.526 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.117 3.883 19 C 0.016 3.984 20 N -0.527 5.527 21 C 0.001 3.999 22 C 0.458 3.542 23 F -0.182 7.182 24 F -0.186 7.186 25 F -0.171 7.171 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.260 0.740 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.048 0.952 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.116 -2.978 19.457 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.037 4.037 3 H 0.072 0.928 4 C -0.001 4.001 5 N -0.366 5.366 6 C 0.304 3.696 7 O -0.408 6.408 8 C -0.168 4.168 9 C -0.001 4.001 10 C -0.565 4.565 11 H 0.075 0.925 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.007 4.007 19 C -0.111 4.111 20 N -0.252 5.252 21 C -0.129 4.129 22 C 0.403 3.597 23 F -0.163 7.163 24 F -0.167 7.167 25 F -0.153 7.153 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.123 0.877 40 H 0.100 0.900 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.442 -3.157 18.675 25.748 hybrid contribution 1.294 0.609 0.458 1.502 sum -16.149 -2.547 19.133 25.166 Atomic orbital electron populations 1.21948 0.93340 1.03098 1.02592 1.22080 0.95820 0.96290 0.89514 0.92830 1.21602 0.80766 1.00944 0.96773 1.48396 1.06138 1.64615 1.17403 1.21620 0.90568 0.75713 0.81690 1.90660 1.76560 1.44152 1.29452 1.21887 0.88193 1.02636 1.04109 1.18907 0.93965 0.97175 0.90008 1.21251 0.91489 1.41952 1.01775 0.92548 1.25027 0.98754 0.95254 0.95366 1.70007 1.35046 1.42057 1.05711 0.86538 0.85686 0.77707 0.78045 1.19724 1.21006 1.21030 1.21851 0.99086 0.97561 0.82187 1.23139 0.86103 1.00842 1.01062 1.61861 1.07583 1.55235 1.00564 1.23349 1.05230 0.94928 0.89365 1.20512 0.73586 0.81937 0.83635 1.93090 1.33075 1.96477 1.93684 1.93186 1.79339 1.88670 1.55533 1.93211 1.87418 1.43348 1.91296 0.90953 0.92315 0.90952 0.88440 0.91049 0.90163 0.90329 0.95892 0.95810 0.92999 0.90661 0.88286 0.93347 0.87745 0.90006 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.50 37.16 0.32 -0.73 16 2 C 0.07 0.67 2.60 -67.59 -0.18 0.50 16 3 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 4 C 0.12 1.51 5.87 -3.60 -0.02 1.49 16 5 N -0.63 -9.13 3.00 -172.18 -0.52 -9.64 16 6 C 0.51 9.90 7.71 -10.98 -0.08 9.82 16 7 O -0.53 -12.46 15.44 5.55 0.09 -12.38 16 8 C -0.13 -2.59 4.00 -27.89 -0.11 -2.70 16 9 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 10 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 11 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 14 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 C 0.12 1.33 6.53 -3.36 -0.02 1.30 16 19 C 0.02 0.16 5.40 -3.46 -0.02 0.14 16 20 N -0.53 -4.75 4.24 -226.05 -0.96 -5.71 16 21 C 0.00 0.01 4.89 -3.82 -0.02 -0.01 16 22 C 0.46 3.80 3.25 37.16 0.12 3.92 16 23 F -0.18 -1.66 14.44 2.25 0.03 -1.63 16 24 F -0.19 -1.57 17.32 2.25 0.04 -1.53 16 25 F -0.17 -1.68 17.13 2.25 0.04 -1.64 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.31 6.46 -51.93 -0.34 -0.02 16 28 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 29 H 0.10 1.35 7.06 -51.93 -0.37 0.99 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.48 7.99 -51.92 -0.41 1.07 16 32 H 0.08 1.44 7.67 -51.93 -0.40 1.04 16 33 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 1.10 6.02 -51.93 -0.31 0.79 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.93 5.21 -51.93 -0.27 0.66 16 40 H 0.08 0.49 8.04 -51.92 -0.42 0.08 16 41 H 0.13 0.67 5.49 -51.93 -0.29 0.39 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -33.66 338.32 -6.73 -40.39 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -5.72 Total: -3.90 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -0.55 Total: 1.01 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: -0.74 Total: -41.97 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.11 Total: -4.80 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.66 -6.73 -40.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360393382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.746 kcal (2) G-P(sol) polarization free energy of solvation -33.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds