Wall clock time and date at job start Tue Mar 31 2020 09:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47623 * 2 1 4 4 C 1.50704 * 109.46960 * 119.99524 * 2 1 3 5 5 O 1.21283 * 119.99934 * 119.99593 * 4 2 1 6 6 N 1.34776 * 120.00176 * 300.00089 * 4 2 1 7 7 C 1.46496 * 119.99962 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.47078 * 179.97438 * 7 6 4 9 9 C 1.53035 * 109.46495 * 295.03295 * 8 7 6 10 10 C 1.53188 * 109.31542 * 178.59824 * 9 8 7 11 11 N 1.46931 * 108.76611 * 54.65660 * 10 9 8 12 12 C 1.36932 * 120.63091 * 126.35696 * 11 10 9 13 13 H 1.07993 * 120.00742 * 331.86534 * 12 11 10 14 14 C 1.38820 * 119.99623 * 151.86310 * 12 11 10 15 15 N 1.31614 * 119.99981 * 343.06468 * 14 12 11 16 16 Si 1.86796 * 119.99918 * 163.06231 * 14 12 11 17 17 H 1.48506 * 109.47084 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47090 * 120.00248 * 16 14 12 19 19 H 1.48494 * 109.47484 * 240.00258 * 16 14 12 20 20 C 1.46923 * 118.73325 * 306.38605 * 11 10 9 21 21 C 1.53043 * 109.46118 * 174.97493 * 8 7 6 22 22 C 1.52996 * 109.47225 * 239.99260 * 2 1 3 23 23 F 1.39897 * 109.47456 * 300.00380 * 22 2 1 24 24 F 1.39908 * 109.46809 * 60.00396 * 22 2 1 25 25 F 1.39896 * 109.47194 * 179.97438 * 22 2 1 26 26 H 1.09001 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47164 * 300.00414 * 1 2 3 28 28 H 1.08999 * 109.46841 * 60.00637 * 1 2 3 29 29 H 0.96998 * 119.99464 * 0.02562 * 6 4 2 30 30 H 1.09001 * 109.47494 * 300.00059 * 7 6 4 31 31 H 1.09009 * 109.47105 * 60.00279 * 7 6 4 32 32 H 1.09003 * 109.45919 * 55.00426 * 8 7 6 33 33 H 1.09003 * 109.49878 * 298.56576 * 9 8 7 34 34 H 1.08998 * 109.49993 * 58.65432 * 9 8 7 35 35 H 1.08998 * 109.60162 * 294.86659 * 10 9 8 36 36 H 1.09009 * 109.70189 * 174.50301 * 10 9 8 37 37 H 0.97004 * 119.99904 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.58818 * 293.81643 * 20 11 10 39 39 H 1.09004 * 109.70169 * 173.46488 * 20 11 10 40 40 H 1.09007 * 109.49703 * 301.34118 * 21 8 7 41 41 H 1.08997 * 109.49712 * 61.43297 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -1.6965 1.1194 6 7 1.7067 -0.2498 2.4546 7 6 2.1945 -0.9407 3.6508 8 6 1.6851 -0.2189 4.9000 9 6 2.2959 1.1828 4.9637 10 6 1.7566 1.9149 6.1966 11 7 2.0130 1.0907 7.3855 12 6 2.6737 1.6113 8.4661 13 1 3.3871 2.4104 8.3293 14 6 2.4264 1.1118 9.7375 15 7 1.3472 0.3932 9.9637 16 14 3.6253 1.4595 11.1271 17 1 4.7495 2.2844 10.6161 18 1 2.9261 2.1941 12.2119 19 1 4.1531 0.1771 11.6581 20 6 1.5477 -0.3029 7.3927 21 6 2.0890 -1.0100 6.1463 22 6 2.0400 -0.7214 -1.2491 23 9 1.5736 -2.0403 -1.2491 24 9 1.5737 -0.0619 -2.3915 25 9 3.4389 -0.7209 -1.2494 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.1487 0.5386 2.5435 30 1 1.8308 -1.9682 3.6507 31 1 3.2846 -0.9411 3.6510 32 1 0.5988 -0.1400 4.8562 33 1 3.3809 1.1042 5.0327 34 1 2.0274 1.7379 4.0649 35 1 0.6839 2.0745 6.0870 36 1 2.2600 2.8760 6.3027 37 1 1.1745 0.0438 10.8521 38 1 0.4579 -0.3243 7.3806 39 1 1.9132 -0.8078 8.2869 40 1 1.6732 -2.0160 6.0892 41 1 3.1759 -1.0679 6.2040 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362405992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:00 Heat of formation + Delta-G solvation = -186.672441 kcal Electronic energy + Delta-G solvation = -26160.079194 eV Core-core repulsion = 21852.863666 eV Total energy + Delta-G solvation = -4307.215528 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.30199 -47.82475 -47.70053 -40.14086 -37.94574 -35.13873 -34.47027 -32.80868 -30.81732 -29.78348 -27.06673 -26.80641 -24.46924 -23.30907 -22.25769 -21.16421 -20.61789 -19.27782 -18.88127 -18.66480 -17.88179 -17.01622 -16.64317 -15.84897 -15.58240 -14.94884 -14.70482 -14.61648 -14.21413 -14.16098 -13.95337 -13.90184 -13.84415 -13.79201 -13.58061 -13.40561 -13.24952 -12.85170 -12.49526 -12.43097 -12.34923 -11.92119 -11.78831 -11.40200 -11.03554 -10.76875 -10.57178 -10.33584 -10.25916 -10.19125 -9.94402 -9.62286 -9.50266 -9.19175 -8.50973 -6.71368 -5.82829 -3.25433 2.25441 2.29359 2.84397 3.34735 3.40581 3.43062 3.44956 3.72962 3.87789 4.37969 4.44114 4.46606 4.57827 4.97008 5.02786 5.11853 5.14866 5.29406 5.36808 5.50494 5.53811 5.77352 5.83479 5.95147 6.04170 6.24518 6.25798 6.37001 6.53771 6.61656 6.69219 6.74661 6.91210 7.19970 7.32749 7.61443 7.76470 7.88320 8.41432 9.17741 9.81081 10.37403 11.25697 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.038945 B = 0.002569 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.795943 B =10895.199874 C =10920.442509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.164 4.164 3 H 0.140 0.860 4 C 0.518 3.482 5 O -0.523 6.523 6 N -0.714 5.714 7 C 0.123 3.877 8 C -0.090 4.090 9 C -0.128 4.128 10 C 0.145 3.855 11 N -0.593 5.593 12 C -0.253 4.253 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.903 5.903 16 Si 0.902 3.098 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.172 3.828 21 C -0.133 4.133 22 C 0.473 3.527 23 F -0.172 7.172 24 F -0.183 7.183 25 F -0.173 7.173 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.403 0.597 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.016 0.984 36 H 0.053 0.947 37 H 0.253 0.747 38 H 0.017 0.983 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.960 -0.026 -20.888 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 H 0.157 0.843 4 C 0.301 3.699 5 O -0.399 6.399 6 N -0.365 5.365 7 C 0.000 4.000 8 C -0.109 4.109 9 C -0.167 4.167 10 C 0.019 3.981 11 N -0.315 5.315 12 C -0.382 4.382 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.547 5.547 16 Si 0.731 3.269 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.215 1.215 20 C 0.046 3.954 21 C -0.173 4.173 22 C 0.418 3.582 23 F -0.153 7.153 24 F -0.164 7.164 25 F -0.154 7.154 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.238 0.762 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.482 -0.826 -20.800 20.964 hybrid contribution 0.375 0.482 0.591 0.850 sum -2.107 -0.343 -20.210 20.322 Atomic orbital electron populations 1.21855 0.89192 1.04843 1.04959 1.22659 1.01431 1.03121 0.91500 0.84262 1.19711 0.80982 0.84838 0.84343 1.90823 1.37114 1.25546 1.86436 1.45949 1.53173 1.32075 1.05327 1.21681 0.99612 0.96025 0.82695 1.21324 1.00129 0.96090 0.93355 1.22087 1.00845 0.95135 0.98639 1.20886 0.96603 0.93756 0.86888 1.44056 1.66731 1.07064 1.13684 1.19221 1.15665 1.18382 0.84976 0.91694 1.25049 0.96575 1.00799 0.97228 1.70033 1.24213 1.39349 1.21116 0.86237 0.80787 0.77611 0.82224 1.20250 1.21731 1.21524 1.20756 0.95523 0.84485 0.94634 1.22185 1.01284 0.97764 0.96061 1.19759 0.75993 0.77898 0.84501 1.93207 1.88272 1.37170 1.96654 1.93183 1.88589 1.80864 1.53778 1.93223 1.29223 1.96344 1.96652 0.90469 0.89557 0.89886 0.76226 0.91416 0.91247 0.91206 0.92080 0.93545 0.96617 0.92854 0.93664 0.96444 0.89378 0.92993 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.85 37.16 0.33 -0.53 16 2 C -0.16 -1.32 2.71 -91.77 -0.25 -1.57 16 3 H 0.14 0.74 8.14 -51.93 -0.42 0.31 16 4 C 0.52 5.97 6.92 -10.98 -0.08 5.89 16 5 O -0.52 -8.30 14.83 5.55 0.08 -8.22 16 6 N -0.71 -7.38 5.16 -60.29 -0.31 -7.69 16 7 C 0.12 1.57 5.06 -4.04 -0.02 1.55 16 8 C -0.09 -1.30 2.19 -90.58 -0.20 -1.50 16 9 C -0.13 -1.93 5.25 -26.62 -0.14 -2.07 16 10 C 0.15 2.81 6.52 -3.71 -0.02 2.78 16 11 N -0.59 -14.21 2.99 -172.32 -0.52 -14.72 16 12 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 13 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 14 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 15 N -0.90 -25.66 11.19 55.49 0.62 -25.04 16 16 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 C 0.17 3.89 5.30 -3.71 -0.02 3.87 16 21 C -0.13 -2.34 5.36 -26.61 -0.14 -2.48 16 22 C 0.47 4.94 2.42 37.16 0.09 5.03 16 23 F -0.17 -2.10 15.88 2.25 0.04 -2.07 16 24 F -0.18 -1.70 16.80 2.25 0.04 -1.66 16 25 F -0.17 -2.17 16.40 2.25 0.04 -2.13 16 26 H 0.08 0.52 7.80 -51.93 -0.41 0.11 16 27 H 0.09 0.35 7.56 -51.93 -0.39 -0.04 16 28 H 0.08 0.37 7.80 -51.93 -0.41 -0.04 16 29 H 0.40 3.13 7.07 -40.82 -0.29 2.84 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.55 7.15 -51.93 -0.37 0.18 16 35 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.05 1.03 7.93 -51.92 -0.41 0.61 16 37 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 2.28 6.06 -51.93 -0.31 1.96 16 40 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 340.11 15.07 5.13 5.13 Total: -1.00 -31.57 340.11 -6.54 -38.11 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -5.94 Total: -2.04 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -0.68 Total: 4.03 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.21 Total: -47.46 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.08 Total: -8.22 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.11 Total: -5.86 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.57 -6.54 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362405992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.564 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds