Wall clock time and date at job start Tue Mar 31 2020 10:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47017 * 2 1 4 4 C 1.35900 * 117.00022 * 179.97438 * 3 2 1 5 5 C 1.38618 * 120.01988 * 0.27590 * 4 3 2 6 6 C 1.38789 * 119.87260 * 180.20465 * 5 4 3 7 7 N 1.39670 * 120.04599 * 179.79209 * 6 5 4 8 8 C 1.46499 * 119.99908 * 179.72787 * 7 6 5 9 9 C 1.53000 * 109.46840 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47233 * 299.99500 * 9 8 7 11 11 C 1.52996 * 109.47328 * 59.99969 * 9 8 7 12 12 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 13 13 H 1.07996 * 119.99928 * 359.97438 * 12 9 8 14 14 C 1.37880 * 119.99611 * 179.97438 * 12 9 8 15 15 N 1.31511 * 120.00327 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99743 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46999 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46979 * 120.00025 * 16 14 12 19 19 H 1.48498 * 109.46942 * 239.99938 * 16 14 12 20 20 C 1.38972 * 119.90812 * 359.52172 * 6 5 4 21 21 C 1.38119 * 120.03418 * 0.24639 * 20 6 5 22 22 C 1.38211 * 120.12635 * 359.97438 * 21 20 6 23 23 N 1.48005 * 119.95152 * 179.97438 * 22 21 20 24 24 O 1.21794 * 120.00275 * 0.02562 * 23 22 21 25 25 O 1.21804 * 119.99882 * 179.97438 * 23 22 21 26 26 H 1.08997 * 109.47501 * 299.99864 * 1 2 3 27 27 H 1.09000 * 109.47231 * 60.00079 * 1 2 3 28 28 H 1.09002 * 109.46832 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47903 * 239.99918 * 2 1 3 30 30 H 1.09005 * 109.47278 * 119.99448 * 2 1 3 31 31 H 1.08002 * 120.06322 * 359.97438 * 5 4 3 32 32 H 0.97000 * 119.99671 * 359.72157 * 7 6 5 33 33 H 1.09002 * 109.47391 * 59.99812 * 8 7 6 34 34 H 1.09001 * 109.46813 * 299.99868 * 8 7 6 35 35 H 1.09000 * 109.46986 * 60.00203 * 10 9 8 36 36 H 1.08993 * 109.47662 * 180.02562 * 10 9 8 37 37 H 1.09002 * 109.47075 * 300.00932 * 10 9 8 38 38 H 1.08992 * 109.47554 * 59.99639 * 11 9 8 39 39 H 1.09004 * 109.47108 * 179.97438 * 11 9 8 40 40 H 1.09000 * 109.46870 * 299.99783 * 11 9 8 41 41 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 42 42 H 1.07995 * 119.98479 * 180.27694 * 20 6 5 43 43 H 1.07995 * 119.93302 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3535 1.5254 0.0005 5 6 4.1984 0.4264 -0.0047 6 6 5.5738 0.6118 0.0001 7 7 6.4284 -0.4930 -0.0007 8 6 7.8801 -0.2961 -0.0016 9 6 8.5792 -1.6570 -0.0031 10 6 8.1717 -2.4411 1.2459 11 6 8.1699 -2.4393 -1.2526 12 6 10.0726 -1.4544 -0.0034 13 1 10.4820 -0.4550 -0.0030 14 6 10.9162 -2.5450 -0.0042 15 7 10.4177 -3.7620 -0.0041 16 14 12.7673 -2.2940 -0.0052 17 1 13.0696 -0.8401 -0.0044 18 1 13.3526 -2.9215 1.2068 19 1 13.3511 -2.9209 -1.2182 20 6 6.0996 1.8982 0.0002 21 6 5.2543 2.9906 0.0006 22 6 3.8844 2.8076 0.0004 23 7 2.9822 3.9809 0.0013 24 8 3.4470 5.1066 0.0019 25 8 1.7747 3.8206 0.0007 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.7870 -0.5722 -0.0088 32 1 6.0606 -1.3905 -0.0007 33 1 8.1717 0.2617 0.8883 34 1 8.1704 0.2622 -0.8917 35 1 7.0916 -2.5876 1.2466 36 1 8.6701 -3.4104 1.2451 37 1 8.4633 -1.8837 2.1361 38 1 8.4602 -1.8807 -2.1424 39 1 8.6684 -3.4087 -1.2539 40 1 7.0898 -2.5858 -1.2519 41 1 11.0111 -4.5293 -0.0043 42 1 7.1697 2.0439 -0.0005 43 1 5.6647 3.9895 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413400324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:40 Heat of formation + Delta-G solvation = -28.369607 kcal Electronic energy + Delta-G solvation = -25440.655169 eV Core-core repulsion = 21682.160907 eV Total energy + Delta-G solvation = -3758.494262 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.80136 -40.30775 -38.59722 -36.84976 -36.05769 -34.34131 -32.10161 -31.65268 -30.23478 -29.55690 -26.12653 -25.95262 -25.57126 -24.52220 -24.34252 -21.92515 -21.71160 -19.27663 -19.04552 -18.40701 -17.85051 -17.19678 -16.90737 -16.30831 -16.12868 -15.56209 -14.92864 -14.60315 -14.38058 -14.33225 -13.63673 -13.51778 -13.25427 -12.86879 -12.84165 -12.46240 -12.45485 -11.81967 -11.71643 -11.56888 -11.33193 -11.21447 -11.15678 -10.98127 -10.81815 -10.75041 -10.69860 -10.65591 -10.36540 -10.21429 -9.77804 -9.60393 -9.01358 -8.76163 -8.57595 -7.69656 -6.20796 -4.32490 0.33278 1.13263 1.74784 1.85869 2.77173 3.14754 3.24292 3.26279 3.43411 3.45659 4.24273 4.41992 4.65759 4.66141 4.81873 4.90078 4.97748 5.05143 5.06673 5.26312 5.39865 5.55147 5.55281 5.75801 5.83668 5.88611 5.92089 6.00742 6.19683 6.24844 6.47891 6.59210 6.67874 6.69056 6.76160 6.99288 7.05544 7.25637 7.32551 7.49501 7.65280 7.78713 7.93264 8.10137 8.16869 8.67879 9.34944 10.80647 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.003034 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.395222 B = 9226.413099 C =10313.136139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.284 6.284 4 C 0.244 3.756 5 C -0.308 4.308 6 C 0.309 3.691 7 N -0.702 5.702 8 C 0.121 3.879 9 C 0.058 3.942 10 C -0.132 4.132 11 C -0.132 4.132 12 C -0.512 4.512 13 H 0.059 0.941 14 C 0.068 3.932 15 N -0.884 5.884 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.228 4.228 21 C 0.024 3.976 22 C -0.154 4.154 23 N 0.055 4.945 24 O -0.208 6.208 25 O -0.167 6.167 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.143 0.857 32 H 0.406 0.594 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.005 0.995 36 H 0.087 0.913 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.087 0.913 40 H 0.005 0.995 41 H 0.261 0.739 42 H 0.147 0.853 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.954 4.114 0.006 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.194 6.194 4 C 0.194 3.806 5 C -0.333 4.333 6 C 0.193 3.807 7 N -0.322 5.322 8 C -0.001 4.001 9 C 0.058 3.942 10 C -0.190 4.190 11 C -0.190 4.190 12 C -0.550 4.550 13 H 0.077 0.923 14 C -0.134 4.134 15 N -0.522 5.522 16 Si 0.722 3.278 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.251 4.251 21 C 0.004 3.996 22 C -0.243 4.243 23 N 0.565 4.435 24 O -0.412 6.412 25 O -0.382 6.382 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.161 0.839 32 H 0.243 0.757 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.024 0.976 36 H 0.106 0.894 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.106 0.894 40 H 0.024 0.976 41 H 0.072 0.928 42 H 0.164 0.836 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.354 3.538 0.006 12.851 hybrid contribution 0.809 -0.305 0.004 0.865 sum -11.545 3.233 0.010 11.989 Atomic orbital electron populations 1.21758 0.92160 1.02796 1.04016 1.22978 0.96462 0.81357 1.01926 1.86386 1.17135 1.29809 1.86110 1.18166 0.83415 0.90917 0.88139 1.20488 0.91962 0.98145 1.22737 1.17998 0.89215 0.88674 0.84773 1.45723 1.06987 1.05978 1.73554 1.22041 0.75914 1.01796 1.00370 1.18340 0.94734 0.88188 0.92983 1.21851 0.95842 1.03813 0.97500 1.21848 0.95849 1.03802 0.97503 1.20964 0.89430 0.92997 1.51634 0.92285 1.24884 0.98912 0.95118 0.94497 1.69795 1.34624 0.97731 1.50016 0.86494 0.85164 0.78424 0.77697 1.19696 1.20950 1.20945 1.20637 1.00892 0.89561 1.14029 1.20541 0.88869 1.00859 0.89353 1.20064 0.90259 0.82624 1.31323 1.43232 1.01453 1.01936 0.96880 1.94473 1.80412 1.09899 1.56406 1.94528 0.97119 1.92689 1.53879 0.91228 0.91220 0.90291 0.91476 0.91480 0.83923 0.75706 0.92215 0.92221 0.97590 0.89410 0.95297 0.95295 0.89424 0.97577 0.92847 0.83554 0.82938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.15 0.38 -0.73 16 2 C 0.05 0.44 5.46 37.15 0.20 0.64 16 3 O -0.28 -3.75 8.14 -41.59 -0.34 -4.09 16 4 C 0.24 3.38 6.67 -39.24 -0.26 3.12 16 5 C -0.31 -3.83 8.88 -39.24 -0.35 -4.18 16 6 C 0.31 4.15 6.65 -83.81 -0.56 3.59 16 7 N -0.70 -10.05 5.13 -58.65 -0.30 -10.35 16 8 C 0.12 2.05 3.74 -4.04 -0.02 2.03 16 9 C 0.06 1.19 0.50 -155.66 -0.08 1.11 16 10 C -0.13 -2.70 8.08 37.16 0.30 -2.40 16 11 C -0.13 -2.70 8.08 37.16 0.30 -2.40 16 12 C -0.51 -12.14 8.01 -34.44 -0.28 -12.42 16 13 H 0.06 1.40 7.74 -52.49 -0.41 0.99 16 14 C 0.07 1.66 5.15 -17.82 -0.09 1.57 16 15 N -0.88 -22.15 9.35 55.43 0.52 -21.63 16 16 Si 0.89 19.41 29.54 -169.99 -5.02 14.39 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 C -0.23 -2.96 9.31 -39.35 -0.37 -3.32 16 21 C 0.02 0.32 9.54 -39.63 -0.38 -0.06 16 22 C -0.15 -2.30 6.87 -79.77 -0.55 -2.85 16 23 N 0.06 0.93 4.45 34.05 0.15 1.08 16 24 O -0.21 -3.55 18.44 -29.46 -0.54 -4.10 16 25 O -0.17 -2.94 17.23 -36.51 -0.63 -3.57 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.54 7.65 -51.93 -0.40 0.14 16 30 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 31 H 0.14 1.46 6.30 -52.49 -0.33 1.13 16 32 H 0.41 5.61 6.17 -40.82 -0.25 5.36 16 33 H 0.06 1.01 7.95 -51.93 -0.41 0.60 16 34 H 0.06 1.01 7.95 -51.93 -0.41 0.59 16 35 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 36 H 0.09 2.04 6.07 -51.93 -0.32 1.72 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 2.04 6.07 -51.93 -0.32 1.72 16 40 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 41 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 42 H 0.15 1.78 6.73 -52.49 -0.35 1.42 16 43 H 0.15 1.74 7.60 -52.49 -0.40 1.34 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -26.61 351.46 -8.56 -35.17 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.95 Total: 4.12 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -1.74 Total: -16.32 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.37 Total: -30.89 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -1.51 Total: -11.76 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -26.61 -8.56 -35.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413400324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.798 kcal (2) G-P(sol) polarization free energy of solvation -26.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds