Wall clock time and date at job start Tue Mar 31 2020 09:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47056 * 2 1 4 4 C 1.52995 * 109.47084 * 120.00165 * 2 1 3 5 5 N 1.46505 * 109.47470 * 294.99987 * 4 2 1 6 6 C 1.34770 * 120.00261 * 180.02562 * 5 4 2 7 7 O 1.21595 * 119.99981 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00013 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00031 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47004 * 184.58369 * 9 8 6 11 11 C 1.50694 * 115.55254 * 294.36779 * 10 9 8 12 12 H 1.08003 * 119.99417 * 95.17661 * 11 10 9 13 13 C 1.37873 * 120.00359 * 274.90618 * 11 10 9 14 14 N 1.31512 * 119.99718 * 355.78977 * 13 11 10 15 15 Si 1.86803 * 120.00186 * 175.79810 * 13 11 10 16 16 H 1.48495 * 109.47221 * 59.99608 * 15 13 11 17 17 H 1.48498 * 109.46997 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46916 * 299.99584 * 15 13 11 19 19 C 1.53006 * 117.49567 * 80.04257 * 10 9 8 20 20 C 1.53001 * 117.49257 * 148.70131 * 10 9 8 21 21 C 1.53004 * 109.46785 * 239.99949 * 2 1 3 22 22 C 1.53000 * 109.46735 * 66.16734 * 21 2 1 23 23 F 1.39903 * 109.47220 * 53.90131 * 22 21 2 24 24 F 1.39910 * 109.46802 * 173.89495 * 22 21 2 25 25 F 1.39898 * 109.47463 * 293.89275 * 22 21 2 26 26 H 1.09000 * 109.47334 * 172.22211 * 1 2 3 27 27 H 1.09007 * 109.46949 * 292.21904 * 1 2 3 28 28 H 1.09001 * 109.47002 * 52.21930 * 1 2 3 29 29 H 1.08998 * 109.47448 * 174.99494 * 4 2 1 30 30 H 1.09007 * 109.47394 * 54.99509 * 4 2 1 31 31 H 0.97001 * 119.99543 * 359.97438 * 5 4 2 32 32 H 0.97001 * 119.99791 * 359.97438 * 8 6 5 33 33 H 1.09002 * 109.46792 * 64.58833 * 9 8 6 34 34 H 1.09000 * 109.47296 * 304.58576 * 9 8 6 35 35 H 0.97002 * 119.99812 * 185.00320 * 14 13 11 36 36 H 1.08995 * 117.49541 * 214.99763 * 19 10 9 37 37 H 1.08999 * 117.49946 * 0.02562 * 19 10 9 38 38 H 1.08992 * 117.50687 * 359.97181 * 20 10 9 39 39 H 1.09009 * 117.49534 * 144.98010 * 20 10 9 40 40 H 1.08997 * 109.46954 * 186.16718 * 21 2 1 41 41 H 1.09004 * 109.47228 * 306.16928 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4424 6 6 1.9965 -0.4132 3.6659 7 8 2.6281 -1.4460 3.7794 8 7 1.6404 0.2831 4.7635 9 6 2.0138 -0.2047 6.0935 10 6 1.3950 0.7002 7.1609 11 6 1.9105 2.1158 7.1914 12 1 1.3792 2.8954 6.6656 13 6 3.0572 2.4169 7.8952 14 7 3.6549 1.4868 8.6073 15 14 3.7616 4.1461 7.8375 16 1 2.7574 5.1074 8.3596 17 1 4.9877 4.2092 8.6730 18 1 4.0995 4.4963 6.4345 19 6 -0.0783 0.4771 7.5084 20 6 1.0135 0.0582 8.4963 21 6 2.0400 -0.7213 -1.2493 22 6 1.6603 0.0839 -2.4936 23 9 2.1209 1.3979 -2.3573 24 9 2.2443 -0.5000 -3.6230 25 9 0.2689 0.0901 -2.6386 26 1 -0.3634 -1.0182 -0.1391 27 1 -0.3633 0.3886 0.9514 28 1 -0.3633 0.6296 -0.8122 29 1 3.1263 -0.7996 1.2055 30 1 1.6053 -1.7199 1.2952 31 1 1.1489 0.8594 2.3518 32 1 1.1368 1.1072 4.6729 33 1 3.0992 -0.1939 6.1929 34 1 1.6472 -1.2229 6.2233 35 1 4.4189 1.7150 9.1598 36 1 -0.6746 1.3543 7.7591 37 1 -0.6065 -0.3145 6.9769 38 1 1.2029 -1.0086 8.6143 39 1 1.1356 0.6600 9.3970 40 1 3.1243 -0.8179 -1.1958 41 1 1.5892 -1.7121 -1.3062 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413514801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:15:00 Heat of formation + Delta-G solvation = -178.060408 kcal Electronic energy + Delta-G solvation = -25481.110181 eV Core-core repulsion = 21174.268098 eV Total energy + Delta-G solvation = -4306.842083 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.44256 -47.94027 -47.89031 -39.56028 -37.33419 -36.52268 -33.47455 -33.09927 -31.95748 -29.37190 -27.21216 -25.87717 -24.94144 -23.56360 -21.19158 -20.93143 -20.32409 -19.39816 -18.87866 -18.75156 -17.77600 -17.60697 -16.30269 -15.69113 -15.50246 -15.08168 -14.80619 -14.73618 -14.55991 -14.38138 -14.20926 -14.03989 -14.00170 -13.95344 -13.64712 -13.09976 -12.97146 -12.89998 -12.60886 -12.29788 -11.83337 -11.63518 -11.53485 -11.28350 -11.11573 -10.97974 -10.95969 -10.55390 -10.24119 -9.77752 -9.47847 -9.04575 -8.90718 -8.48763 -8.24805 -8.00818 -6.07713 -4.17708 2.41968 3.09584 3.26144 3.32387 3.33354 3.49361 3.69834 3.71549 3.75756 4.34208 4.40386 4.43716 4.58711 4.84106 4.95713 5.05656 5.18821 5.20191 5.37143 5.48747 5.54324 5.67745 5.85468 5.95786 6.03170 6.34620 6.47408 6.58580 6.69227 6.70559 6.84052 7.11924 7.29264 7.41331 7.43195 7.59719 7.80420 8.33632 8.61703 8.83354 9.15777 9.49414 10.99474 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.020012 B = 0.002718 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.836589 B =10299.844691 C =10940.955244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.108 4.108 3 H 0.092 0.908 4 C 0.151 3.849 5 N -0.753 5.753 6 C 0.698 3.302 7 O -0.604 6.604 8 N -0.720 5.720 9 C 0.182 3.818 10 C 0.025 3.975 11 C -0.501 4.501 12 H 0.059 0.941 13 C 0.074 3.926 14 N -0.875 5.875 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.211 4.211 20 C -0.142 4.142 21 C -0.160 4.160 22 C 0.453 3.547 23 F -0.183 7.183 24 F -0.186 7.186 25 F -0.181 7.181 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.394 0.606 32 H 0.397 0.603 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.634 -2.701 -19.951 20.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.127 4.127 3 H 0.110 0.890 4 C 0.026 3.974 5 N -0.411 5.411 6 C 0.398 3.602 7 O -0.484 6.484 8 N -0.372 5.372 9 C 0.058 3.942 10 C 0.024 3.976 11 C -0.538 4.538 12 H 0.077 0.923 13 C -0.131 4.131 14 N -0.510 5.510 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.248 4.248 20 C -0.180 4.180 21 C -0.199 4.199 22 C 0.399 3.601 23 F -0.164 7.164 24 F -0.168 7.168 25 F -0.162 7.162 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.228 0.772 32 H 0.230 0.770 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.133 0.867 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.834 -3.706 -19.748 20.666 hybrid contribution -0.026 1.843 -0.222 1.857 sum -4.860 -1.863 -19.970 20.637 Atomic orbital electron populations 1.22157 0.93503 1.03126 1.03222 1.21400 0.97610 1.00913 0.92800 0.88953 1.20973 0.99865 0.94756 0.81837 1.45040 1.62584 1.28861 1.04624 1.16022 0.80105 0.83715 0.80383 1.90876 1.46040 1.25490 1.85960 1.45160 1.59376 1.27367 1.05345 1.20862 0.99941 0.94574 0.78781 1.19040 0.90574 0.95358 0.92607 1.20304 1.08749 0.91444 1.33328 0.92319 1.24984 0.96247 0.96816 0.95021 1.69978 1.21648 1.32426 1.26989 0.86687 0.78570 0.84737 0.78139 1.20313 1.21271 1.20190 1.23013 0.93450 1.01578 1.06787 1.22468 1.01959 0.98165 0.95419 1.22887 1.05858 1.00587 0.90567 1.20579 0.74650 0.78896 0.85942 1.93193 1.88658 1.38696 1.95864 1.93195 1.84235 1.84044 1.55313 1.93159 1.30395 1.96456 1.96211 0.91874 0.91545 0.91316 0.91511 0.91459 0.77176 0.76994 0.91702 0.94414 0.92805 0.90452 0.91737 0.91794 0.89534 0.86744 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 8.34 37.16 0.31 -0.89 16 2 C -0.11 -0.81 2.33 -90.62 -0.21 -1.02 16 3 H 0.09 0.70 7.47 -51.93 -0.39 0.32 16 4 C 0.15 1.59 5.06 -4.04 -0.02 1.57 16 5 N -0.75 -9.81 5.21 -65.22 -0.34 -10.15 16 6 C 0.70 12.85 8.57 -86.93 -0.74 12.10 16 7 O -0.60 -13.51 16.34 5.28 0.09 -13.42 16 8 N -0.72 -13.72 5.49 -65.22 -0.36 -14.08 16 9 C 0.18 4.11 5.50 -4.04 -0.02 4.08 16 10 C 0.03 0.58 1.46 -155.66 -0.23 0.35 16 11 C -0.50 -12.72 8.62 -34.44 -0.30 -13.02 16 12 H 0.06 1.46 7.82 -52.48 -0.41 1.05 16 13 C 0.07 1.93 5.43 -17.82 -0.10 1.84 16 14 N -0.87 -24.11 12.65 55.43 0.70 -23.40 16 15 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 C -0.21 -4.35 9.96 -26.69 -0.27 -4.61 16 20 C -0.14 -3.23 9.15 -26.69 -0.24 -3.48 16 21 C -0.16 -0.97 4.83 -26.73 -0.13 -1.10 16 22 C 0.45 3.49 3.12 37.16 0.12 3.60 16 23 F -0.18 -1.64 16.45 2.25 0.04 -1.60 16 24 F -0.19 -1.59 17.32 2.25 0.04 -1.55 16 25 F -0.18 -1.51 14.41 2.25 0.03 -1.48 16 26 H 0.06 0.45 8.12 -51.93 -0.42 0.02 16 27 H 0.07 0.51 7.03 -51.92 -0.36 0.15 16 28 H 0.07 0.51 6.05 -51.93 -0.31 0.19 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.39 4.17 7.68 -40.82 -0.31 3.85 16 32 H 0.40 6.83 8.36 -40.82 -0.34 6.49 16 33 H 0.06 1.68 8.14 -51.93 -0.42 1.25 16 34 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 35 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 36 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.09 2.11 8.14 -51.92 -0.42 1.69 16 40 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.11 0.54 8.12 -51.93 -0.42 0.12 16 LS Contribution 353.27 15.07 5.32 5.32 Total: -1.00 -30.41 353.27 -7.24 -37.65 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.91 Total: 7.91 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.83 Total: -0.57 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.00 Total: -47.64 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.09 Total: -13.42 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.11 Total: -4.63 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.41 -7.24 -37.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413514801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.410 kcal (2) G-P(sol) polarization free energy of solvation -30.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds