Wall clock time and date at job start Tue Mar 31 2020 09:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47201 * 2 1 4 4 C 1.52998 * 109.47256 * 239.99249 * 2 1 3 5 5 N 1.46500 * 109.46846 * 65.00720 * 4 2 1 6 6 C 1.34776 * 120.00110 * 179.97438 * 5 4 2 7 7 O 1.21586 * 119.99975 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99943 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99831 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47162 * 184.79205 * 9 8 6 11 11 C 1.50701 * 115.54866 * 300.95117 * 10 9 8 12 12 H 1.08001 * 119.99924 * 95.27412 * 11 10 9 13 13 C 1.37874 * 119.99975 * 274.99975 * 11 10 9 14 14 N 1.31519 * 119.99889 * 355.46572 * 13 11 10 15 15 Si 1.86800 * 120.00253 * 175.45759 * 13 11 10 16 16 H 1.48500 * 109.46649 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47352 * 120.00187 * 15 13 11 18 18 H 1.48502 * 109.47262 * 240.00383 * 15 13 11 19 19 C 1.53003 * 117.49663 * 86.61926 * 10 9 8 20 20 C 1.53002 * 117.49809 * 155.28235 * 10 9 8 21 21 C 1.53000 * 109.46781 * 119.99800 * 2 1 3 22 22 C 1.53008 * 109.47079 * 293.52458 * 21 2 1 23 23 F 1.39898 * 109.47042 * 66.55926 * 22 21 2 24 24 F 1.39900 * 109.47109 * 186.55998 * 22 21 2 25 25 F 1.39902 * 109.46944 * 306.56038 * 22 21 2 26 26 H 1.08994 * 109.47410 * 187.57813 * 1 2 3 27 27 H 1.08999 * 109.47463 * 307.58781 * 1 2 3 28 28 H 1.09004 * 109.46770 * 67.58114 * 1 2 3 29 29 H 1.08993 * 109.47613 * 305.00533 * 4 2 1 30 30 H 1.09002 * 109.47097 * 184.99840 * 4 2 1 31 31 H 0.97001 * 119.99867 * 359.97438 * 5 4 2 32 32 H 0.96993 * 120.00359 * 359.97438 * 8 6 5 33 33 H 1.08997 * 109.47304 * 64.78935 * 9 8 6 34 34 H 1.09005 * 109.46910 * 304.79107 * 9 8 6 35 35 H 0.96995 * 119.99822 * 185.00093 * 14 13 11 36 36 H 1.08999 * 117.49786 * 215.00189 * 19 10 9 37 37 H 1.09001 * 117.50177 * 0.02562 * 19 10 9 38 38 H 1.09000 * 117.50005 * 359.96881 * 20 10 9 39 39 H 1.08992 * 117.49863 * 144.97862 * 20 10 9 40 40 H 1.09004 * 109.47357 * 53.52035 * 21 2 1 41 41 H 1.08995 * 109.47754 * 173.52529 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 1.6526 0.0352 -2.4423 6 6 1.9966 -0.4133 -3.6658 7 8 2.6289 -1.4456 -3.7793 8 7 1.6398 0.2825 -4.7635 9 6 2.0142 -0.2048 -6.0934 10 6 1.5958 0.8209 -7.1489 11 6 0.1245 1.1440 -7.1939 12 1 -0.2566 2.0016 -6.6594 13 6 -0.7341 0.3480 -7.9220 14 7 -0.2582 -0.6395 -8.6487 15 14 -2.5732 0.6719 -7.8761 16 1 -2.8495 1.8317 -6.9907 17 1 -3.0577 0.9703 -9.2477 18 1 -3.2744 -0.5284 -7.3536 19 6 2.5774 1.9517 -7.4631 20 6 2.3605 0.8229 -8.4741 21 6 2.0399 -0.7212 1.2493 22 6 1.6670 0.0879 2.4932 23 9 0.2766 0.0918 2.6475 24 9 2.2597 -0.4905 3.6208 25 9 2.1238 1.4023 2.3487 26 1 -0.3634 -1.0186 0.1355 27 1 -0.3634 0.6268 0.8143 28 1 -0.3633 0.3919 -0.9500 29 1 1.6054 -1.7199 -1.2950 30 1 3.1264 -0.7996 -1.2054 31 1 1.1485 0.8589 -2.3518 32 1 1.1350 1.1058 -4.6730 33 1 1.5116 -1.1522 -6.2881 34 1 3.0936 -0.3506 -6.1363 35 1 -0.8528 -1.1535 -9.2172 36 1 2.1590 2.9294 -7.7024 37 1 3.5214 1.9648 -6.9182 38 1 3.1619 0.0939 -8.5939 39 1 1.7993 1.0577 -9.3785 40 1 1.5850 -1.7100 1.3092 41 1 3.1237 -0.8228 1.1934 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413514803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:15:04 Heat of formation + Delta-G solvation = -178.423550 kcal Electronic energy + Delta-G solvation = -25517.626990 eV Core-core repulsion = 21210.769161 eV Total energy + Delta-G solvation = -4306.857830 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.43934 -47.93474 -47.88988 -39.54534 -37.32082 -36.51596 -33.46083 -33.08937 -31.97222 -29.35583 -27.19537 -25.85872 -24.95829 -23.55847 -21.17040 -20.91717 -20.31709 -19.41198 -18.87270 -18.74518 -17.76405 -17.58327 -16.30572 -15.72479 -15.43855 -15.07270 -14.80476 -14.75885 -14.52619 -14.38067 -14.20699 -14.05978 -14.02857 -13.95148 -13.43353 -13.30460 -12.95141 -12.77804 -12.63375 -12.28220 -11.85794 -11.60105 -11.56536 -11.27011 -11.10063 -11.02442 -10.94974 -10.53359 -10.23413 -9.76984 -9.46266 -9.04113 -8.89828 -8.50192 -8.25863 -7.97264 -6.09014 -4.18955 2.42407 3.11035 3.23038 3.32409 3.33547 3.49904 3.70135 3.72587 3.77060 4.33009 4.41544 4.44984 4.59839 4.86546 4.97116 5.06037 5.19196 5.20453 5.37129 5.52134 5.57747 5.68057 5.87444 6.00095 6.03709 6.34207 6.48588 6.57631 6.70619 6.71714 6.85586 7.12155 7.31115 7.38544 7.44291 7.60864 7.79557 8.32927 8.64097 8.82754 9.17503 9.48373 10.98175 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.020167 B = 0.002771 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.042922 B =10100.513878 C =10824.576358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.108 4.108 3 H 0.092 0.908 4 C 0.151 3.849 5 N -0.754 5.754 6 C 0.698 3.302 7 O -0.605 6.605 8 N -0.719 5.719 9 C 0.182 3.818 10 C 0.024 3.976 11 C -0.500 4.500 12 H 0.060 0.940 13 C 0.074 3.926 14 N -0.873 5.873 15 Si 0.890 3.110 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.211 4.211 20 C -0.142 4.142 21 C -0.160 4.160 22 C 0.453 3.547 23 F -0.180 7.180 24 F -0.187 7.187 25 F -0.183 7.183 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.394 0.606 32 H 0.398 0.602 33 H 0.064 0.936 34 H 0.037 0.963 35 H 0.261 0.739 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.097 2.079 20.031 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.127 4.127 3 H 0.110 0.890 4 C 0.026 3.974 5 N -0.411 5.411 6 C 0.398 3.602 7 O -0.485 6.485 8 N -0.371 5.371 9 C 0.058 3.942 10 C 0.023 3.977 11 C -0.537 4.537 12 H 0.078 0.922 13 C -0.131 4.131 14 N -0.509 5.509 15 Si 0.718 3.282 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.248 4.248 20 C -0.181 4.181 21 C -0.199 4.199 22 C 0.399 3.601 23 F -0.162 7.162 24 F -0.168 7.168 25 F -0.165 7.165 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.228 0.772 32 H 0.232 0.768 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.133 0.867 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.612 0.930 19.830 20.178 hybrid contribution -1.569 0.967 0.187 1.853 sum 2.043 1.898 20.017 20.210 Atomic orbital electron populations 1.22157 0.93435 1.03210 1.03299 1.21396 0.97678 1.00802 0.92776 0.89013 1.20971 0.99710 0.94895 0.81850 1.45037 1.62501 1.28950 1.04627 1.16018 0.80218 0.83604 0.80396 1.90870 1.46396 1.25227 1.85994 1.45135 1.59071 1.27688 1.05198 1.20819 0.96410 0.97952 0.78973 1.19053 0.92458 0.93245 0.92913 1.20366 0.89544 1.11615 1.32199 0.92201 1.24991 0.98519 0.94505 0.95049 1.69999 1.35158 1.19831 1.25950 0.86581 0.85662 0.78128 0.77862 1.19739 1.21048 1.20978 1.23034 1.00417 0.94907 1.06488 1.22461 1.01426 0.98974 0.95201 1.22890 1.05831 1.00590 0.90591 1.20579 0.74640 0.78915 0.85932 1.93165 1.30432 1.96450 1.96134 1.93192 1.83882 1.84268 1.55455 1.93187 1.88794 1.38708 1.95772 0.91821 0.91354 0.91430 0.91419 0.91582 0.77159 0.76832 0.91812 0.94427 0.92923 0.90463 0.91729 0.91804 0.89536 0.86737 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 8.36 37.16 0.31 -1.00 16 2 C -0.11 -0.81 2.32 -90.62 -0.21 -1.02 16 3 H 0.09 0.68 7.45 -51.93 -0.39 0.29 16 4 C 0.15 1.60 5.06 -4.04 -0.02 1.58 16 5 N -0.75 -9.91 5.21 -65.23 -0.34 -10.25 16 6 C 0.70 12.92 8.57 -86.92 -0.74 12.18 16 7 O -0.61 -13.56 16.34 5.29 0.09 -13.47 16 8 N -0.72 -13.81 5.44 -65.22 -0.35 -14.16 16 9 C 0.18 4.10 5.53 -4.04 -0.02 4.08 16 10 C 0.02 0.56 1.56 -155.65 -0.24 0.32 16 11 C -0.50 -12.60 8.30 -34.44 -0.29 -12.88 16 12 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 13 C 0.07 1.92 5.43 -17.82 -0.10 1.83 16 14 N -0.87 -23.97 12.65 55.43 0.70 -23.27 16 15 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C -0.21 -4.38 9.95 -26.69 -0.27 -4.64 16 20 C -0.14 -3.24 9.17 -26.69 -0.24 -3.49 16 21 C -0.16 -0.98 4.83 -26.73 -0.13 -1.11 16 22 C 0.45 3.50 3.12 37.16 0.12 3.61 16 23 F -0.18 -1.55 14.45 2.25 0.03 -1.52 16 24 F -0.19 -1.59 17.32 2.25 0.04 -1.55 16 25 F -0.18 -1.61 16.43 2.25 0.04 -1.58 16 26 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 27 H 0.07 0.54 6.06 -51.93 -0.31 0.22 16 28 H 0.07 0.58 7.03 -51.93 -0.36 0.21 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.39 4.24 7.68 -40.82 -0.31 3.92 16 32 H 0.40 6.98 8.13 -40.82 -0.33 6.65 16 33 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.04 0.84 8.11 -51.93 -0.42 0.42 16 35 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 36 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 40 H 0.11 0.57 8.12 -51.93 -0.42 0.15 16 41 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -30.27 352.84 -7.24 -37.51 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.90 Total: 8.28 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -1.84 Total: -0.55 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.01 Total: -47.68 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.09 Total: -13.47 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.11 Total: -4.64 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.27 -7.24 -37.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413514803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.910 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds