Wall clock time and date at job start Tue Mar 31 2020 09:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35899 * 117.00304 * 2 1 4 4 C 1.38799 * 120.02782 * 0.02717 * 3 2 1 5 5 C 1.38151 * 120.05658 * 179.97438 * 4 3 2 6 6 C 1.38196 * 120.10634 * 359.97438 * 5 4 3 7 7 C 1.38746 * 120.06095 * 0.02562 * 6 5 4 8 8 O 1.35895 * 120.03438 * 180.02562 * 7 6 5 9 9 C 1.42901 * 116.99447 * 5.45945 * 8 7 6 10 10 H 1.09004 * 109.47458 * 35.15445 * 9 8 7 11 11 C 1.52997 * 109.47472 * 275.14602 * 9 8 7 12 12 C 1.53001 * 109.46942 * 155.14758 * 9 8 7 13 13 N 1.46505 * 109.47279 * 300.00302 * 12 9 8 14 14 C 1.34778 * 119.99958 * 180.02562 * 13 12 9 15 15 O 1.21585 * 120.00024 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99342 * 179.97438 * 14 13 12 17 17 C 1.46509 * 119.99540 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.46933 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00378 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99795 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00039 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00074 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46927 * 89.99920 * 22 20 18 24 24 H 1.48501 * 109.47149 * 210.00074 * 22 20 18 25 25 H 1.48498 * 109.46955 * 329.99728 * 22 20 18 26 26 C 1.38614 * 120.02904 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.46747 * 300.00048 * 1 2 3 28 28 H 1.08996 * 109.47287 * 59.99278 * 1 2 3 29 29 H 1.08992 * 109.47172 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.96829 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.94539 * 180.02562 * 5 4 3 32 32 H 1.08004 * 119.96938 * 180.27803 * 6 5 4 33 33 H 1.09002 * 109.47136 * 180.02562 * 11 9 8 34 34 H 1.09000 * 109.47102 * 300.00184 * 11 9 8 35 35 H 1.08998 * 109.46928 * 60.00276 * 11 9 8 36 36 H 1.09000 * 109.47199 * 60.00081 * 12 9 8 37 37 H 1.09002 * 109.47210 * 180.02562 * 12 9 8 38 38 H 0.97005 * 119.99665 * 359.97438 * 13 12 9 39 39 H 0.96993 * 120.00672 * 359.97438 * 16 14 13 40 40 H 1.08992 * 109.46973 * 300.00255 * 17 16 14 41 41 H 1.09001 * 109.46944 * 59.99943 * 17 16 14 42 42 H 0.97000 * 120.00556 * 179.97438 * 21 20 18 43 43 H 1.07994 * 120.05483 * 0.04938 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2907 2.3753 0.0006 5 6 1.9173 3.6065 0.0011 6 6 3.2972 3.6820 0.0016 7 6 4.0568 2.5210 0.0010 8 8 5.4137 2.5958 0.0021 9 6 5.9914 3.8971 0.1248 10 1 5.3725 4.5090 0.7811 11 6 6.0727 4.5514 -1.2558 12 6 7.3975 3.7771 0.7159 13 7 7.3197 3.1505 2.0380 14 6 8.4435 2.9422 2.7522 15 8 9.5220 3.2738 2.2991 16 7 8.3718 2.3662 3.9685 17 6 9.5935 2.1392 4.7447 18 6 9.2410 1.4880 6.0572 19 1 8.2101 1.2650 6.2898 20 6 10.2346 1.1758 6.9606 21 7 9.9271 0.6070 8.1058 22 14 12.0177 1.5607 6.5580 23 1 12.3507 2.9249 7.0408 24 1 12.9006 0.5703 7.2249 25 1 12.2190 1.4928 5.0883 26 6 3.4302 1.2840 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2122 2.3188 0.0006 31 1 1.3278 4.5114 0.0020 32 1 3.7848 4.6457 0.0066 33 1 6.5138 5.5438 -1.1621 34 1 6.6917 3.9395 -1.9119 35 1 5.0710 4.6369 -1.6768 36 1 8.0165 3.1652 0.0598 37 1 7.8380 4.7696 0.8100 38 1 6.4592 2.8863 2.3995 39 1 7.5114 2.1020 4.3301 40 1 10.2643 1.4882 4.1842 41 1 10.0864 3.0929 4.9335 42 1 10.6262 0.3870 8.7413 43 1 4.0197 0.3791 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426439026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:41:15 Heat of formation + Delta-G solvation = -79.695456 kcal Electronic energy + Delta-G solvation = -24545.290188 eV Core-core repulsion = 20784.570270 eV Total energy + Delta-G solvation = -3760.719918 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.84988 -39.71503 -39.05624 -36.92813 -34.87237 -34.06683 -32.51206 -32.00491 -30.84884 -29.68861 -28.06166 -27.60267 -25.92566 -23.38430 -22.83486 -21.98058 -21.04748 -20.22495 -19.08556 -18.19139 -17.02007 -16.79164 -16.53120 -16.26252 -16.10796 -15.83100 -15.38575 -15.05024 -14.78958 -14.33436 -14.01250 -13.89154 -13.69029 -13.19053 -13.01734 -12.98344 -12.84472 -12.57260 -12.51589 -12.30708 -12.02977 -11.87715 -11.73287 -11.36936 -10.99679 -10.93610 -10.88743 -10.71701 -9.92666 -9.57807 -9.41317 -8.85443 -8.78397 -8.71109 -8.40293 -7.96682 -6.16668 -4.18277 1.08768 1.13100 2.53976 3.21557 3.29036 3.31769 3.38711 3.46702 3.47232 3.85106 4.35735 4.38265 4.47223 4.60046 4.65650 4.70981 4.74892 4.78875 4.84830 4.91404 5.05354 5.11769 5.18905 5.23176 5.27770 5.37541 5.49280 5.70870 5.72852 5.80785 5.92378 5.98844 6.13244 6.21988 6.74505 6.78528 7.01634 7.16416 7.18197 7.28921 7.45405 7.60657 8.32648 8.73573 8.86018 9.24620 9.45028 10.95397 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.002694 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.229156 B =10391.811552 C =11777.641438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.165 3.835 4 C -0.248 4.248 5 C -0.041 4.041 6 C -0.247 4.247 7 C 0.173 3.827 8 O -0.300 6.300 9 C 0.071 3.929 10 H 0.082 0.918 11 C -0.178 4.178 12 C 0.148 3.852 13 N -0.753 5.753 14 C 0.696 3.304 15 O -0.605 6.605 16 N -0.722 5.722 17 C 0.238 3.762 18 C -0.541 4.541 19 H 0.079 0.921 20 C 0.077 3.923 21 N -0.894 5.894 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.260 1.260 26 C -0.188 4.188 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.395 0.605 39 H 0.393 0.607 40 H 0.023 0.977 41 H 0.018 0.982 42 H 0.267 0.733 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.817 6.234 -20.105 29.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.119 3.881 4 C -0.267 4.267 5 C -0.059 4.059 6 C -0.266 4.266 7 C 0.127 3.873 8 O -0.213 6.213 9 C 0.015 3.985 10 H 0.100 0.900 11 C -0.235 4.235 12 C 0.023 3.977 13 N -0.411 5.411 14 C 0.396 3.604 15 O -0.485 6.485 16 N -0.374 5.374 17 C 0.116 3.884 18 C -0.579 4.579 19 H 0.097 0.903 20 C -0.127 4.127 21 N -0.532 5.532 22 Si 0.704 3.296 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.184 1.184 26 C -0.207 4.207 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.228 0.772 39 H 0.226 0.774 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.462 6.104 -20.332 28.800 hybrid contribution -0.289 0.237 0.313 0.487 sum -19.750 6.341 -20.019 28.828 Atomic orbital electron populations 1.23083 0.78069 1.04092 1.01451 1.86082 1.21582 1.26745 1.88303 1.18587 0.91375 0.84246 0.93849 1.21125 1.00059 0.92244 1.13234 1.20688 0.93745 0.97067 0.94437 1.21226 0.94819 0.97748 1.12785 1.18560 0.82630 0.93075 0.93040 1.86204 1.16732 1.31249 1.87104 1.22817 0.94729 0.83002 0.97967 0.89977 1.22308 1.03533 1.01643 0.96044 1.21197 0.93465 0.99341 0.83724 1.44992 1.08776 1.68200 1.19110 1.16075 0.83751 0.79202 0.81381 1.90859 1.27284 1.58717 1.71633 1.45386 1.12173 1.63446 1.16421 1.19359 0.82459 0.96080 0.90538 1.21105 0.96327 1.41015 0.99486 0.90300 1.24784 0.99257 0.94098 0.94523 1.69881 1.33757 1.41406 1.08110 0.86807 0.84520 0.78568 0.79747 1.19880 1.20959 1.18403 1.19478 0.91467 0.97070 1.12670 0.92443 0.92589 0.88097 0.85455 0.85542 0.85037 0.90371 0.90831 0.91316 0.90700 0.89748 0.77163 0.77430 0.95895 0.96373 0.92306 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.14 10.49 -19.42 -0.20 -3.35 16 3 C 0.17 1.72 6.68 -39.24 -0.26 1.46 16 4 C -0.25 -2.12 9.04 -39.41 -0.36 -2.48 16 5 C -0.04 -0.33 10.04 -39.63 -0.40 -0.73 16 6 C -0.25 -2.21 8.24 -39.41 -0.32 -2.53 16 7 C 0.17 1.88 6.60 -39.24 -0.26 1.62 16 8 O -0.30 -3.41 9.54 -19.41 -0.19 -3.60 16 9 C 0.07 0.66 2.31 -26.73 -0.06 0.60 16 10 H 0.08 0.67 6.31 -51.93 -0.33 0.34 16 11 C -0.18 -1.28 9.17 37.16 0.34 -0.94 16 12 C 0.15 1.81 5.37 -4.04 -0.02 1.79 16 13 N -0.75 -11.31 5.45 -65.22 -0.36 -11.67 16 14 C 0.70 14.18 8.57 -86.92 -0.74 13.43 16 15 O -0.61 -14.59 16.34 5.29 0.09 -14.50 16 16 N -0.72 -15.45 5.55 -66.41 -0.37 -15.82 16 17 C 0.24 6.08 4.50 -5.19 -0.02 6.06 16 18 C -0.54 -15.22 9.83 -34.44 -0.34 -15.56 16 19 H 0.08 2.30 7.84 -52.49 -0.41 1.89 16 20 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 21 N -0.89 -26.97 13.96 55.43 0.77 -26.20 16 22 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 26 C -0.19 -2.15 9.93 -39.29 -0.39 -2.54 16 27 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 28 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.13 0.80 6.29 -52.49 -0.33 0.47 16 31 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.13 0.95 5.42 -52.48 -0.28 0.66 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.46 6.90 -51.93 -0.36 0.10 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.39 5.14 8.36 -40.82 -0.34 4.80 16 39 H 0.39 7.46 8.33 -40.82 -0.34 7.12 16 40 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 41 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 359.79 15.07 5.42 5.42 Total: -1.00 -35.00 359.79 -7.53 -42.53 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.08 Total: 6.52 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -1.94 Total: 3.46 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.05 Total: -53.69 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.30 Total: -21.44 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.00 -7.53 -42.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426439026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.164 kcal (2) G-P(sol) polarization free energy of solvation -35.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds