Wall clock time and date at job start Tue Mar 31 2020 09:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35898 * 116.99959 * 2 1 4 4 C 1.38795 * 120.02597 * 0.02562 * 3 2 1 5 5 C 1.38157 * 120.05855 * 180.02562 * 4 3 2 6 6 C 1.38200 * 120.10464 * 0.02562 * 5 4 3 7 7 C 1.38753 * 120.05612 * 359.97217 * 6 5 4 8 8 O 1.35894 * 120.02815 * 179.97438 * 7 6 5 9 9 C 1.42904 * 117.00197 * 174.56966 * 8 7 6 10 10 H 1.09001 * 109.46855 * 325.15220 * 9 8 7 11 11 C 1.53003 * 109.46842 * 85.14684 * 9 8 7 12 12 C 1.52994 * 109.47474 * 205.14571 * 9 8 7 13 13 N 1.46507 * 109.46851 * 65.00130 * 12 9 8 14 14 C 1.34775 * 119.99585 * 179.97438 * 13 12 9 15 15 O 1.21587 * 120.00716 * 359.73077 * 14 13 12 16 16 N 1.34778 * 119.99740 * 180.02562 * 14 13 12 17 17 C 1.46501 * 120.00312 * 179.72853 * 16 14 13 18 18 C 1.50700 * 109.47379 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99920 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99921 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00076 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99685 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47008 * 90.00642 * 22 20 18 24 24 H 1.48504 * 109.46678 * 210.00353 * 22 20 18 25 25 H 1.48497 * 109.47109 * 330.00126 * 22 20 18 26 26 C 1.38610 * 120.03263 * 180.27630 * 3 2 1 27 27 H 1.09000 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47189 * 299.99606 * 1 2 3 29 29 H 1.08994 * 109.47452 * 59.99982 * 1 2 3 30 30 H 1.07996 * 119.97397 * 0.04190 * 4 3 2 31 31 H 1.07994 * 119.95106 * 179.97438 * 5 4 3 32 32 H 1.08001 * 119.96944 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.46781 * 59.99843 * 11 9 8 34 34 H 1.08997 * 109.47143 * 179.97438 * 11 9 8 35 35 H 1.09001 * 109.46845 * 300.00618 * 11 9 8 36 36 H 1.09001 * 109.47576 * 305.00387 * 12 9 8 37 37 H 1.08995 * 109.47267 * 185.00386 * 12 9 8 38 38 H 0.96993 * 120.00369 * 0.02562 * 13 12 9 39 39 H 0.96999 * 120.00055 * 359.72739 * 16 14 13 40 40 H 1.08999 * 109.46917 * 300.00458 * 17 16 14 41 41 H 1.09002 * 109.47098 * 59.99957 * 17 16 14 42 42 H 0.96998 * 120.00286 * 180.02562 * 21 20 18 43 43 H 1.08004 * 120.05232 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3752 0.0005 5 6 1.9170 3.6066 0.0000 6 6 3.2969 3.6822 -0.0016 7 6 4.0566 2.5211 -0.0021 8 8 5.4134 2.5962 -0.0042 9 6 6.1314 1.3664 0.1159 10 1 5.5826 0.6875 0.7686 11 6 6.2875 0.7299 -1.2667 12 6 7.5144 1.6392 0.7107 13 7 7.3671 2.1374 2.0806 14 6 8.4599 2.4465 2.8063 15 8 9.5682 2.3073 2.3260 16 7 8.3245 2.9043 4.0667 17 6 9.5125 3.2346 4.8577 18 6 9.0898 3.7196 6.2205 19 1 8.0411 3.7765 6.4721 20 6 10.0419 4.0907 7.1461 21 7 11.3189 4.0219 6.8396 22 14 9.5179 4.6925 8.8351 23 1 9.4229 3.5382 9.7643 24 1 10.5204 5.6603 9.3487 25 1 8.1939 5.3576 8.7348 26 6 3.4300 1.2842 -0.0058 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.2120 2.3187 0.0016 31 1 1.3275 4.5115 0.0000 32 1 3.7844 4.6460 -0.0024 33 1 6.8362 1.4089 -1.9194 34 1 6.8355 -0.2078 -1.1752 35 1 5.3022 0.5356 -1.6905 36 1 8.0292 2.3858 0.1060 37 1 8.0944 0.7165 0.7200 38 1 6.4832 2.2441 2.4655 39 1 7.4404 3.0151 4.4501 40 1 10.1356 2.3468 4.9655 41 1 10.0791 4.0171 4.3528 42 1 11.9888 4.2826 7.4908 43 1 4.0196 0.3793 -0.0099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426439027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:41:19 Heat of formation + Delta-G solvation = -84.079022 kcal Electronic energy + Delta-G solvation = -24550.549890 eV Core-core repulsion = 20789.639886 eV Total energy + Delta-G solvation = -3760.910004 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.86376 -39.61880 -38.92514 -37.00242 -34.76026 -33.95043 -32.43000 -31.79105 -31.04782 -29.57841 -27.68292 -27.46683 -25.74165 -23.67434 -22.52177 -22.23004 -21.13720 -20.08694 -19.14252 -18.05098 -17.05562 -16.70906 -16.31181 -16.15427 -16.07201 -15.81075 -15.24462 -14.89156 -14.76747 -14.46542 -14.30137 -13.73329 -13.50351 -13.13314 -12.90143 -12.85316 -12.76725 -12.64989 -12.33216 -11.95232 -11.89818 -11.74779 -11.65811 -11.31833 -11.00059 -10.92393 -10.88500 -10.83638 -10.26692 -9.38706 -9.32806 -8.86954 -8.75682 -8.64452 -8.33122 -7.71024 -6.11629 -4.17883 1.06149 1.17579 2.77064 2.99363 3.27457 3.31288 3.34640 3.40312 3.48005 4.00336 4.35960 4.44021 4.46655 4.64282 4.71980 4.73225 4.75310 4.79728 4.90313 5.05024 5.11442 5.19145 5.21809 5.24390 5.26828 5.39557 5.46222 5.68089 5.79552 5.87873 5.93448 6.06543 6.15886 6.31666 6.85019 6.95463 7.15602 7.21023 7.56477 7.59416 7.61925 7.94773 8.08494 8.80864 8.98657 9.37497 9.52354 10.98682 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015942 B = 0.002576 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.895204 B =10868.090347 C =11877.312386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.164 3.836 4 C -0.249 4.249 5 C -0.041 4.041 6 C -0.188 4.188 7 C 0.173 3.827 8 O -0.298 6.298 9 C 0.069 3.931 10 H 0.082 0.918 11 C -0.177 4.177 12 C 0.148 3.852 13 N -0.756 5.756 14 C 0.694 3.306 15 O -0.602 6.602 16 N -0.729 5.729 17 C 0.267 3.733 18 C -0.541 4.541 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.246 4.246 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.392 0.608 39 H 0.386 0.614 40 H 0.024 0.976 41 H 0.025 0.975 42 H 0.265 0.735 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.509 -6.558 -16.929 29.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.118 3.882 4 C -0.268 4.268 5 C -0.060 4.060 6 C -0.206 4.206 7 C 0.127 3.873 8 O -0.211 6.211 9 C 0.013 3.987 10 H 0.100 0.900 11 C -0.235 4.235 12 C 0.023 3.977 13 N -0.414 5.414 14 C 0.394 3.606 15 O -0.481 6.481 16 N -0.381 5.381 17 C 0.146 3.854 18 C -0.579 4.579 19 H 0.080 0.920 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.266 4.266 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.225 0.775 39 H 0.218 0.782 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.012 -6.668 -17.284 28.770 hybrid contribution -1.373 0.343 1.296 1.919 sum -23.385 -6.326 -15.988 29.025 Atomic orbital electron populations 1.23070 0.78150 1.03992 1.01509 1.86064 1.21584 1.27014 1.88386 1.18684 0.91554 0.84174 0.93757 1.21125 1.00033 0.92276 1.13404 1.20732 0.93469 0.97177 0.94584 1.20419 0.93122 0.97193 1.09910 1.18704 0.82794 0.92940 0.92843 1.86248 1.14594 1.33216 1.87038 1.22832 0.92807 0.85048 0.98013 0.90000 1.22301 1.03402 1.01799 0.95990 1.21163 0.93247 1.00792 0.82508 1.45056 1.08259 1.73346 1.14733 1.16112 0.83973 0.78761 0.81770 1.90870 1.24208 1.61178 1.71872 1.45710 1.11826 1.68421 1.12163 1.18978 0.81753 0.96089 0.88606 1.21233 0.93393 1.45525 0.97778 0.91966 1.24945 0.94733 0.95382 0.99004 1.69977 0.99929 1.47027 1.35391 0.86413 0.78373 0.78606 0.83490 1.20512 1.21027 1.19774 1.20467 0.92642 0.97908 1.15546 0.88200 0.92458 0.92562 0.85484 0.85081 0.84870 0.90823 0.90335 0.91374 0.90689 0.89750 0.77465 0.78165 0.95750 0.95728 0.92493 0.84387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.97 10.49 -19.42 -0.20 -3.18 16 3 C 0.16 1.64 6.68 -39.24 -0.26 1.38 16 4 C -0.25 -2.14 9.04 -39.41 -0.36 -2.50 16 5 C -0.04 -0.35 10.04 -39.62 -0.40 -0.75 16 6 C -0.19 -1.90 9.98 -39.40 -0.39 -2.30 16 7 C 0.17 1.91 6.60 -39.24 -0.26 1.65 16 8 O -0.30 -3.49 9.74 -19.41 -0.19 -3.68 16 9 C 0.07 0.70 2.26 -26.73 -0.06 0.64 16 10 H 0.08 0.76 6.31 -51.93 -0.33 0.44 16 11 C -0.18 -1.44 9.17 37.16 0.34 -1.10 16 12 C 0.15 1.94 5.34 -4.04 -0.02 1.92 16 13 N -0.76 -11.89 5.51 -65.22 -0.36 -12.25 16 14 C 0.69 14.86 8.57 -86.92 -0.74 14.11 16 15 O -0.60 -15.41 16.34 5.29 0.09 -15.32 16 16 N -0.73 -16.21 5.55 -66.41 -0.37 -16.58 16 17 C 0.27 7.33 5.43 -5.19 -0.03 7.30 16 18 C -0.54 -15.02 9.28 -34.44 -0.32 -15.34 16 19 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 22 Si 0.90 21.18 29.54 -169.99 -5.02 16.15 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C -0.25 -2.57 8.19 -39.29 -0.32 -2.89 16 27 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 29 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 30 H 0.13 0.80 6.29 -52.49 -0.33 0.47 16 31 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.53 6.92 -51.93 -0.36 0.17 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.39 5.27 8.49 -40.82 -0.35 4.93 16 39 H 0.39 7.41 8.34 -40.82 -0.34 7.07 16 40 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.14 1.32 5.43 -52.48 -0.28 1.03 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -34.89 363.72 -7.89 -42.78 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.12 Total: 7.43 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.93 Total: 4.95 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.01 Total: -54.62 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.31 Total: -22.18 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.89 -7.89 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426439027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.299 kcal (2) G-P(sol) polarization free energy of solvation -34.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds