Wall clock time and date at job start Tue Mar 31 2020 09:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35996 * 117.00252 * 2 1 4 4 C 1.38563 * 120.06745 * 0.02562 * 3 2 1 5 5 C 1.38245 * 119.99471 * 179.97438 * 4 3 2 6 6 C 1.38253 * 120.15129 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.14258 * 359.67800 * 6 5 4 8 8 C 1.38568 * 119.99717 * 0.60003 * 7 6 5 9 9 O 1.36000 * 120.07450 * 179.70159 * 8 7 6 10 10 C 1.42902 * 116.99678 * 5.40777 * 9 8 7 11 11 H 1.09002 * 109.47052 * 35.17760 * 10 9 8 12 12 C 1.52995 * 109.47367 * 275.17627 * 10 9 8 13 13 C 1.52997 * 109.47063 * 155.17262 * 10 9 8 14 14 N 1.46501 * 109.47224 * 300.00239 * 13 10 9 15 15 C 1.34780 * 120.00025 * 179.71856 * 14 13 10 16 16 O 1.21589 * 119.99814 * 0.28124 * 15 14 13 17 17 N 1.34778 * 119.99804 * 180.27409 * 15 14 13 18 18 C 1.46504 * 119.99520 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.46677 * 180.02562 * 18 17 15 20 20 H 1.07993 * 120.00680 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99996 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00376 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99644 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46868 * 90.00569 * 23 21 19 25 25 H 1.48506 * 109.47063 * 210.00097 * 23 21 19 26 26 H 1.48494 * 109.47419 * 330.00029 * 23 21 19 27 27 H 1.09003 * 109.47505 * 299.99875 * 1 2 3 28 28 H 1.09004 * 109.47132 * 59.99975 * 1 2 3 29 29 H 1.09005 * 109.47457 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00819 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.92790 * 179.97438 * 5 4 3 32 32 H 1.07992 * 119.92844 * 179.97438 * 6 5 4 33 33 H 1.07999 * 120.00551 * 180.31954 * 7 6 5 34 34 H 1.09002 * 109.47143 * 300.00077 * 12 10 9 35 35 H 1.09001 * 109.47381 * 60.00030 * 12 10 9 36 36 H 1.08997 * 109.47119 * 180.02562 * 12 10 9 37 37 H 1.08997 * 109.47285 * 180.02562 * 13 10 9 38 38 H 1.09000 * 109.47182 * 59.99997 * 13 10 9 39 39 H 0.97002 * 120.00111 * 359.97438 * 14 13 10 40 40 H 0.96992 * 120.00484 * 0.02562 * 17 15 14 41 41 H 1.08999 * 109.46969 * 299.99776 * 18 17 15 42 42 H 1.09001 * 109.47249 * 60.00600 * 18 17 15 43 43 H 0.97001 * 120.00273 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3747 0.0005 5 6 1.9224 3.6057 0.0011 6 6 3.3029 3.6798 0.0005 7 6 4.0603 2.5233 0.0062 8 6 3.4359 1.2863 -0.0002 9 8 4.1795 0.1476 -0.0008 10 6 5.5950 0.2971 0.1254 11 1 5.8144 1.1369 0.7847 12 6 6.2052 0.5582 -1.2532 13 6 6.1926 -0.9826 0.7136 14 7 5.6084 -1.2326 2.0336 15 6 5.9836 -2.3158 2.7425 16 8 6.8108 -3.0827 2.2886 17 7 5.4420 -2.5486 3.9545 18 6 5.8503 -3.7258 4.7252 19 6 5.1020 -3.7541 6.0330 20 1 4.3936 -2.9733 6.2669 21 6 5.3226 -4.7764 6.9315 22 7 4.6700 -4.8010 8.0729 23 14 6.5486 -6.1267 6.5273 24 1 7.8942 -5.7371 7.0200 25 1 6.1277 -7.3903 7.1841 26 1 6.5985 -6.3261 5.0566 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2146 2.3197 0.0005 31 1 1.3342 4.5115 0.0011 32 1 3.7907 4.6433 0.0005 33 1 5.1385 2.5839 0.0110 34 1 5.9858 -0.2816 -1.9125 35 1 5.7795 1.4699 -1.6722 36 1 7.2849 0.6718 -1.1570 37 1 7.2723 -0.8685 0.8102 38 1 5.9733 -1.8225 0.0543 39 1 4.9488 -0.6205 2.3958 40 1 4.7820 -1.9370 4.3164 41 1 5.6235 -4.6282 4.1576 42 1 6.9217 -3.6787 4.9202 43 1 4.8250 -5.5204 8.7049 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426452382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:41:31 Heat of formation + Delta-G solvation = -77.201550 kcal Electronic energy + Delta-G solvation = -25001.205310 eV Core-core repulsion = 21240.593536 eV Total energy + Delta-G solvation = -3760.611774 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.87955 -39.43886 -38.74458 -37.17322 -34.87017 -34.03599 -32.44467 -31.87277 -30.61796 -29.89017 -28.04623 -27.42544 -25.87974 -23.49895 -22.50538 -21.99224 -21.03344 -20.18451 -19.00409 -18.17754 -17.55595 -16.75977 -16.25369 -16.16898 -15.95531 -15.43294 -15.08447 -14.93632 -14.79544 -14.61014 -14.26705 -13.78950 -13.52452 -13.15514 -12.96227 -12.89919 -12.75716 -12.48515 -12.35324 -12.28667 -11.98457 -11.75919 -11.37197 -11.34100 -11.21875 -10.97099 -10.91288 -10.70662 -9.91535 -9.54522 -9.39910 -9.01337 -8.80790 -8.69670 -8.04583 -7.93618 -6.15895 -4.17301 1.00118 1.18385 2.90077 3.06638 3.28319 3.32639 3.39629 3.46846 3.48202 3.88947 4.39076 4.40683 4.51465 4.62772 4.67945 4.72848 4.77276 4.89453 4.94761 5.08613 5.09313 5.14424 5.19765 5.29699 5.32304 5.37209 5.41853 5.64600 5.76478 5.85153 5.93923 5.99705 6.21247 6.39851 6.78623 6.81168 6.88317 7.18200 7.31365 7.38502 7.47937 7.63729 8.34160 8.75679 8.87940 9.27912 9.46320 10.96172 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.002971 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.883442 B = 9423.096771 C =10364.937969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.303 6.303 3 C 0.099 3.901 4 C -0.174 4.174 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.176 4.176 8 C 0.105 3.895 9 O -0.292 6.292 10 C 0.070 3.930 11 H 0.079 0.921 12 C -0.177 4.177 13 C 0.149 3.851 14 N -0.752 5.752 15 C 0.697 3.303 16 O -0.606 6.606 17 N -0.722 5.722 18 C 0.238 3.762 19 C -0.541 4.541 20 H 0.079 0.921 21 C 0.077 3.923 22 N -0.894 5.894 23 Si 0.877 3.123 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.260 1.260 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.101 0.899 30 H 0.133 0.867 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.395 0.605 40 H 0.392 0.608 41 H 0.023 0.977 42 H 0.018 0.982 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.628 19.173 -20.033 28.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.216 6.216 3 C 0.054 3.946 4 C -0.193 4.193 5 C -0.139 4.139 6 C -0.137 4.137 7 C -0.195 4.195 8 C 0.059 3.941 9 O -0.206 6.206 10 C 0.013 3.987 11 H 0.097 0.903 12 C -0.235 4.235 13 C 0.024 3.976 14 N -0.409 5.409 15 C 0.396 3.604 16 O -0.486 6.486 17 N -0.375 5.375 18 C 0.116 3.884 19 C -0.579 4.579 20 H 0.097 0.903 21 C -0.127 4.127 22 N -0.532 5.532 23 Si 0.704 3.296 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.184 1.184 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.119 0.881 30 H 0.151 0.849 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.228 0.772 40 H 0.225 0.775 41 H 0.041 0.959 42 H 0.036 0.964 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.852 17.903 -20.263 27.470 hybrid contribution -0.219 0.230 0.311 0.444 sum -5.071 18.133 -19.952 27.434 Atomic orbital electron populations 1.23079 0.78549 1.04219 1.00998 1.86233 1.20995 1.25645 1.88736 1.18334 0.89288 0.85403 1.01611 1.21090 0.99993 0.91607 1.06638 1.20845 0.94607 0.96961 1.01442 1.20857 0.93743 0.97841 1.01211 1.21159 1.00603 0.91148 1.06589 1.18281 0.88283 0.86337 1.01195 1.86316 1.18429 1.28063 1.87764 1.22783 0.78981 0.99196 0.97742 0.90290 1.22302 1.01662 1.03288 0.96232 1.21170 0.97196 0.95454 0.83785 1.44973 1.48240 1.28297 1.19401 1.16075 0.81746 0.81206 0.81357 1.90856 1.37495 1.48767 1.71439 1.45374 1.45314 1.29832 1.16931 1.19351 0.95509 0.82945 0.90619 1.21110 1.25282 1.11575 0.99919 0.90319 1.24783 0.95745 0.97621 0.94510 1.69882 1.41645 1.33219 1.08449 0.86808 0.81638 0.81425 0.79776 1.19880 1.20978 1.18391 0.92644 0.92903 0.88055 0.84876 0.85722 0.85672 0.84565 0.90862 0.91470 0.90458 0.89865 0.90773 0.77186 0.77468 0.95914 0.96386 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.30 -3.77 10.28 -34.23 -0.35 -4.12 16 3 C 0.10 1.15 6.70 -39.12 -0.26 0.89 16 4 C -0.17 -1.59 9.04 -39.46 -0.36 -1.94 16 5 C -0.12 -0.96 10.04 -39.57 -0.40 -1.36 16 6 C -0.12 -0.95 10.04 -39.57 -0.40 -1.35 16 7 C -0.18 -1.61 8.24 -39.46 -0.33 -1.94 16 8 C 0.10 1.21 6.61 -39.12 -0.26 0.95 16 9 O -0.29 -3.66 9.33 -34.24 -0.32 -3.98 16 10 C 0.07 0.70 2.31 -26.73 -0.06 0.64 16 11 H 0.08 0.68 6.32 -51.93 -0.33 0.35 16 12 C -0.18 -1.37 9.17 37.16 0.34 -1.03 16 13 C 0.15 1.93 5.37 -4.04 -0.02 1.91 16 14 N -0.75 -11.78 5.45 -65.23 -0.36 -12.14 16 15 C 0.70 14.52 8.57 -86.91 -0.74 13.77 16 16 O -0.61 -14.85 16.34 5.29 0.09 -14.76 16 17 N -0.72 -15.73 5.55 -66.41 -0.37 -16.10 16 18 C 0.24 6.15 4.50 -5.19 -0.02 6.12 16 19 C -0.54 -15.30 9.83 -34.44 -0.34 -15.63 16 20 H 0.08 2.31 7.84 -52.49 -0.41 1.90 16 21 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 22 N -0.89 -27.04 13.96 55.43 0.77 -26.26 16 23 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 27 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 31 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.14 1.00 5.42 -52.49 -0.28 0.71 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.48 6.90 -51.93 -0.36 0.12 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.39 5.45 8.36 -40.82 -0.34 5.11 16 40 H 0.39 7.62 8.33 -40.82 -0.34 7.28 16 41 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 42 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -35.63 359.54 -7.82 -43.45 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.08 Total: 6.85 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -1.95 Total: 4.36 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.05 Total: -54.50 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.59 Total: -22.87 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.63 -7.82 -43.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426452382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.752 kcal (2) G-P(sol) polarization free energy of solvation -35.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds