Wall clock time and date at job start Tue Mar 31 2020 10:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.47130 * 2 1 4 4 C 1.46491 * 120.00329 * 270.00128 * 3 2 1 5 5 C 1.50702 * 109.47245 * 270.00175 * 4 3 2 6 6 H 1.08005 * 119.99930 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00194 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99707 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99748 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47002 * 90.00310 * 9 7 5 11 11 H 1.48504 * 109.46881 * 210.00087 * 9 7 5 12 12 H 1.48503 * 109.47229 * 329.99790 * 9 7 5 13 13 C 1.34775 * 119.99416 * 90.00149 * 3 2 1 14 14 O 1.21282 * 119.99546 * 180.02562 * 13 3 2 15 15 C 1.50695 * 120.00373 * 359.97438 * 13 3 2 16 16 C 1.53003 * 109.47268 * 179.97438 * 15 13 3 17 17 N 1.46496 * 109.47151 * 179.97438 * 16 15 13 18 18 C 1.35896 * 119.46638 * 90.00384 * 17 16 15 19 19 C 1.50706 * 119.55408 * 359.97438 * 18 17 16 20 20 C 1.35015 * 120.88393 * 179.72524 * 18 17 16 21 21 C 1.40925 * 119.81071 * 0.27358 * 20 18 17 22 22 O 1.35448 * 120.51375 * 179.97438 * 21 20 18 23 23 C 1.38253 * 118.97535 * 0.02562 * 21 20 18 24 24 C 1.34597 * 119.47095 * 270.28195 * 17 16 15 25 25 O 1.22122 * 119.92836 * 0.02562 * 24 17 16 26 26 H 1.09004 * 109.46842 * 59.99835 * 1 2 3 27 27 H 1.08994 * 109.46813 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47354 * 299.99668 * 1 2 3 29 29 H 1.08996 * 109.47354 * 240.00332 * 2 1 3 30 30 H 1.08993 * 109.47346 * 120.00253 * 2 1 3 31 31 H 1.08998 * 109.47239 * 29.99533 * 4 3 2 32 32 H 1.08994 * 109.47307 * 149.99862 * 4 3 2 33 33 H 0.97005 * 119.99396 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47243 * 60.00380 * 15 13 3 35 35 H 1.08996 * 109.47414 * 300.00325 * 15 13 3 36 36 H 1.09005 * 109.46609 * 60.00543 * 16 15 13 37 37 H 1.08996 * 109.47234 * 300.00515 * 16 15 13 38 38 H 1.09001 * 109.46953 * 179.72697 * 19 18 17 39 39 H 1.09000 * 109.47318 * 299.72295 * 19 18 17 40 40 H 1.09000 * 109.47161 * 59.72926 * 19 18 17 41 41 H 1.08005 * 120.10049 * 180.30090 * 20 18 17 42 42 H 0.96693 * 114.00119 * 179.97438 * 22 21 20 43 43 H 1.07995 * 120.43900 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1494 2.3907 -2.8774 8 7 5.3916 2.1844 -3.2567 9 14 3.0131 3.4363 -3.9285 10 1 3.1158 4.8563 -3.5066 11 1 3.4067 3.3141 -5.3552 12 1 1.6135 2.9695 -3.7595 13 6 2.2430 2.0165 1.1673 14 8 2.6468 3.1601 1.1673 15 6 1.9913 1.3062 2.4723 16 6 2.3234 2.2433 3.6353 17 7 2.0782 1.5530 4.9039 18 6 3.0813 0.8425 5.4832 19 6 4.4288 0.7755 4.8115 20 6 2.8885 0.1999 6.6549 21 6 1.6304 0.2585 7.2873 22 8 1.4211 -0.3812 8.4627 23 6 0.6129 0.9783 6.6889 24 6 0.8613 1.6281 5.4742 25 8 -0.0269 2.2679 4.9328 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.5818 1.6878 -2.0283 32 1 2.0955 3.1411 -1.1383 33 1 5.7176 2.5749 -4.0827 34 1 2.6212 0.4186 2.5302 35 1 0.9433 1.0124 2.5299 36 1 1.6938 3.1312 3.5776 37 1 3.3716 2.5367 3.5775 38 1 5.1061 0.1716 5.4153 39 1 4.3211 0.3243 3.8252 40 1 4.8337 1.7822 4.7083 41 1 3.6961 -0.3572 7.1065 42 1 0.5255 -0.2781 8.8125 43 1 -0.3605 1.0386 7.1526 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438058154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:47 Heat of formation + Delta-G solvation = -85.450989 kcal Electronic energy + Delta-G solvation = -25752.403501 eV Core-core repulsion = 21991.434004 eV Total energy + Delta-G solvation = -3760.969497 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.70449 -39.33912 -38.71735 -37.16087 -35.52645 -34.14017 -32.75423 -31.82845 -30.80434 -30.21645 -27.77782 -27.69933 -24.99118 -23.01500 -22.91815 -22.65722 -21.59148 -18.91944 -18.46196 -17.66024 -17.44816 -16.94920 -16.20737 -16.06266 -15.65708 -15.39509 -15.17029 -14.49235 -14.30319 -14.07399 -13.88895 -13.74488 -13.52003 -13.50479 -13.42527 -12.85389 -12.68071 -12.48546 -12.33520 -12.19239 -11.94425 -11.80914 -11.49439 -11.16942 -11.14810 -10.96956 -10.69549 -10.51312 -10.18057 -10.06877 -9.58596 -9.50366 -9.09816 -8.61709 -8.14086 -7.78468 -6.12134 -4.10909 0.62885 1.70753 2.46687 3.24339 3.25547 3.27846 3.33795 3.36271 3.45582 3.77701 4.17610 4.37422 4.58467 4.72188 4.80545 4.85162 4.95209 4.97143 5.08559 5.11777 5.22517 5.23342 5.46936 5.50455 5.52685 5.53911 5.64743 5.74071 5.81783 5.87433 5.95711 5.98214 6.12755 6.26869 6.39974 6.67851 6.92205 6.98959 7.02582 7.28775 7.57784 8.00112 8.17734 8.42809 8.85324 8.91734 9.48475 11.01127 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.023670 B = 0.003245 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.633470 B = 8627.273340 C = 9001.661378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.590 5.590 4 C 0.216 3.784 5 C -0.529 4.529 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.515 3.485 14 O -0.541 6.541 15 C -0.154 4.154 16 C 0.102 3.898 17 N -0.500 5.500 18 C 0.205 3.795 19 C -0.133 4.133 20 C -0.255 4.255 21 C 0.243 3.757 22 O -0.468 6.468 23 C -0.373 4.373 24 C 0.533 3.467 25 O -0.552 6.552 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.037 0.963 33 H 0.265 0.735 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.152 0.848 42 H 0.406 0.594 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.353 -8.375 20.166 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.321 5.321 4 C 0.095 3.905 5 C -0.567 4.567 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.301 3.699 14 O -0.418 6.418 15 C -0.195 4.195 16 C -0.019 4.019 17 N -0.212 5.212 18 C 0.095 3.905 19 C -0.190 4.190 20 C -0.278 4.278 21 C 0.191 3.809 22 O -0.269 6.269 23 C -0.396 4.396 24 C 0.336 3.664 25 O -0.435 6.435 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.170 0.830 42 H 0.260 0.740 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.004 -7.476 19.586 21.808 hybrid contribution -1.127 0.427 -0.423 1.278 sum -7.131 -7.049 19.164 21.629 Atomic orbital electron populations 1.22238 0.96648 1.01669 1.02411 1.21456 0.93525 0.83727 1.03052 1.47921 1.63761 1.13436 1.06987 1.19669 0.97360 0.93448 0.80014 1.21307 0.95260 1.32950 1.07186 0.90770 1.24846 0.94992 0.95775 0.97341 1.69891 1.15119 1.44987 1.23596 0.86858 0.81496 0.81641 0.79761 1.19865 1.21060 1.19059 1.19962 0.78368 0.86806 0.84790 1.90687 1.45964 1.17963 1.87232 1.21994 1.04402 0.99785 0.93312 1.21783 1.04720 0.96145 0.79246 1.45726 1.11196 1.42354 1.21898 1.20409 0.90534 0.87953 0.91621 1.21234 0.90708 1.04994 1.02066 1.19744 0.97595 1.12534 0.97959 1.19252 0.92934 0.85543 0.83200 1.84791 1.38469 1.69342 1.34328 1.22190 1.01540 1.14182 1.01648 1.16507 0.81070 0.82753 0.86049 1.90990 1.42350 1.44535 1.65597 0.92140 0.91941 0.92843 0.89607 0.91509 0.95197 0.94507 0.92541 0.89005 0.88531 0.87191 0.87853 0.88737 0.88942 0.88883 0.83037 0.74013 0.83484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.11 1.63 5.93 -4.04 -0.02 1.60 16 3 N -0.59 -11.83 2.46 -175.07 -0.43 -12.26 16 4 C 0.22 5.20 4.23 -5.20 -0.02 5.18 16 5 C -0.53 -14.86 9.94 -34.44 -0.34 -15.20 16 6 H 0.07 2.26 8.06 -52.48 -0.42 1.84 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 9 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 13 C 0.51 10.09 7.67 -10.99 -0.08 10.01 16 14 O -0.54 -12.73 15.56 5.56 0.09 -12.64 16 15 C -0.15 -2.21 4.56 -27.88 -0.13 -2.34 16 16 C 0.10 1.42 4.15 -4.04 -0.02 1.40 16 17 N -0.50 -6.16 2.59 -115.40 -0.30 -6.46 16 18 C 0.21 1.93 6.65 -81.93 -0.54 1.38 16 19 C -0.13 -0.93 8.72 36.01 0.31 -0.62 16 20 C -0.25 -2.20 9.57 -39.71 -0.38 -2.58 16 21 C 0.24 2.22 6.95 -38.56 -0.27 1.95 16 22 O -0.47 -3.16 13.58 -18.04 -0.24 -3.40 16 23 C -0.37 -4.14 9.71 -38.92 -0.38 -4.52 16 24 C 0.53 7.67 7.38 -15.69 -0.12 7.55 16 25 O -0.55 -10.12 16.62 4.81 0.08 -10.04 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.71 7.22 -51.93 -0.37 0.34 16 29 H 0.09 1.36 8.07 -51.93 -0.42 0.95 16 30 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 31 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 32 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.09 1.09 6.42 -51.93 -0.33 0.76 16 35 H 0.10 1.38 7.18 -51.93 -0.37 1.00 16 36 H 0.11 1.79 7.34 -51.93 -0.38 1.41 16 37 H 0.10 1.31 6.32 -51.93 -0.33 0.99 16 38 H 0.09 0.44 7.81 -51.93 -0.41 0.03 16 39 H 0.09 0.68 7.10 -51.93 -0.37 0.32 16 40 H 0.09 0.65 7.34 -51.93 -0.38 0.27 16 41 H 0.15 0.98 7.88 -52.48 -0.41 0.57 16 42 H 0.41 0.84 8.74 45.56 0.40 1.24 16 43 H 0.15 1.39 8.00 -52.49 -0.42 0.97 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -37.47 356.66 -6.33 -43.80 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.30 Total: 1.39 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -1.71 Total: 3.94 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.05 Total: -45.20 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.08 Total: -26.08 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.47 -6.33 -43.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438058154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.652 kcal (2) G-P(sol) polarization free energy of solvation -37.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds