Wall clock time and date at job start Tue Mar 31 2020 09:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47373 * 2 1 4 4 C 1.53001 * 109.47219 * 120.00616 * 2 1 3 5 5 N 1.46500 * 109.46777 * 294.99919 * 4 2 1 6 6 C 1.34780 * 119.99706 * 180.02562 * 5 4 2 7 7 O 1.21581 * 120.00000 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99711 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99923 * 179.97438 * 8 6 5 10 10 H 1.09003 * 110.54083 * 327.61222 * 9 8 6 11 11 C 1.54268 * 110.48389 * 90.22208 * 9 8 6 12 12 C 1.53876 * 106.59607 * 142.28972 * 11 9 8 13 13 C 1.54268 * 106.59992 * 0.02562 * 12 11 9 14 14 H 1.08996 * 110.48777 * 95.06810 * 13 12 11 15 15 C 1.50698 * 110.48760 * 217.71212 * 13 12 11 16 16 H 1.08006 * 120.00324 * 114.76926 * 15 13 12 17 17 C 1.37879 * 120.00291 * 294.77471 * 15 13 12 18 18 N 1.31513 * 119.99457 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00343 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47180 * 89.99451 * 19 17 15 21 21 H 1.48497 * 109.47007 * 210.00075 * 19 17 15 22 22 H 1.48500 * 109.46960 * 329.99483 * 19 17 15 23 23 C 1.54882 * 110.48722 * 205.00109 * 9 8 6 24 24 C 1.53009 * 109.46550 * 240.00141 * 2 1 3 25 25 F 1.39894 * 109.47250 * 299.99729 * 24 2 1 26 26 F 1.39903 * 109.47117 * 60.00487 * 24 2 1 27 27 F 1.39905 * 109.46524 * 179.97438 * 24 2 1 28 28 H 1.09005 * 109.46919 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46755 * 299.99204 * 1 2 3 30 30 H 1.08991 * 109.47230 * 59.99812 * 1 2 3 31 31 H 1.08998 * 109.47021 * 174.99917 * 4 2 1 32 32 H 1.09003 * 109.47184 * 54.99905 * 4 2 1 33 33 H 0.96999 * 120.00479 * 359.97438 * 5 4 2 34 34 H 0.97002 * 119.99982 * 359.97438 * 8 6 5 35 35 H 1.08994 * 110.03288 * 23.00936 * 11 9 8 36 36 H 1.09000 * 110.07311 * 261.59259 * 11 9 8 37 37 H 1.08998 * 110.03805 * 240.71854 * 12 11 9 38 38 H 1.09000 * 110.07667 * 119.30450 * 12 11 9 39 39 H 0.97000 * 119.99685 * 180.02562 * 18 17 15 40 40 H 1.08994 * 110.76048 * 85.06650 * 23 9 8 41 41 H 1.09004 * 110.75771 * 321.69045 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 1.6525 0.0352 2.4423 6 6 1.9966 -0.4134 3.6658 7 8 2.6281 -1.4461 3.7793 8 7 1.6404 0.2829 4.7635 9 6 2.0139 -0.2049 6.0935 10 1 2.0339 -1.2946 6.1095 11 6 3.3841 0.3664 6.5130 12 6 3.2939 0.6628 8.0202 13 6 1.8723 0.2606 8.4642 14 1 1.8698 -0.7538 8.8630 15 6 1.3446 1.2324 9.4879 16 1 0.4925 1.8535 9.2542 17 6 1.9498 1.3290 10.7231 18 7 2.9872 0.5725 11.0078 19 14 1.2953 2.5331 11.9923 20 1 0.2652 1.8627 12.8257 21 1 2.4101 2.9937 12.8586 22 1 0.6905 3.7003 11.3016 23 6 1.0333 0.3349 7.1639 24 6 2.0400 -0.7213 -1.2494 25 9 1.5736 -2.0402 -1.2494 26 9 1.5736 -0.0617 -2.3916 27 9 3.4390 -0.7208 -1.2497 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 3.1264 -0.7996 1.2055 32 1 1.6055 -1.7200 1.2950 33 1 1.1490 0.8592 2.3518 34 1 1.1369 1.1070 4.6729 35 1 3.5896 1.2851 5.9635 36 1 4.1688 -0.3657 6.3227 37 1 3.4556 1.7252 8.2023 38 1 4.0343 0.0744 8.5622 39 1 3.4127 0.6401 11.8769 40 1 0.1517 -0.3018 7.2364 41 1 0.7505 1.3645 6.9446 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454803343.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:41:39 Heat of formation + Delta-G solvation = -209.104917 kcal Electronic energy + Delta-G solvation = -25464.624054 eV Core-core repulsion = 21156.435780 eV Total energy + Delta-G solvation = -4308.188274 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.50883 -47.99486 -47.95705 -40.01843 -37.56342 -36.40404 -33.76058 -33.00913 -31.80518 -28.15883 -27.60063 -26.93781 -25.64267 -23.74573 -21.70172 -21.09169 -19.92448 -19.17955 -18.89808 -18.79404 -18.40833 -17.30579 -16.65804 -16.00077 -15.66072 -15.22096 -14.87448 -14.68267 -14.62571 -14.39635 -14.20791 -14.14863 -14.13660 -14.07119 -14.02955 -13.41825 -13.21713 -12.51581 -12.43192 -12.12640 -11.88025 -11.80733 -11.75390 -11.21434 -10.98765 -10.87643 -10.58817 -10.32960 -10.04649 -9.91435 -9.57450 -9.31950 -9.21466 -8.75126 -8.51360 -8.38957 -6.01622 -4.04851 2.17284 2.76445 3.29502 3.33273 3.36449 3.36778 3.38711 3.54746 3.57451 4.20289 4.32845 4.37812 4.43886 4.53077 5.05943 5.10918 5.27370 5.30359 5.41527 5.54266 5.55298 5.66618 5.84982 6.24762 6.30125 6.36043 6.51188 6.66749 6.71439 6.88071 6.93610 6.99202 7.30078 7.32882 7.70526 7.87360 8.01048 8.11589 8.43135 8.72473 8.98018 9.59212 11.08194 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.041385 B = 0.002253 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.410366 B =12426.111501 C =12699.911964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.150 4.150 3 H 0.122 0.878 4 C 0.143 3.857 5 N -0.750 5.750 6 C 0.702 3.298 7 O -0.589 6.589 8 N -0.732 5.732 9 C 0.153 3.847 10 H 0.087 0.913 11 C -0.135 4.135 12 C -0.097 4.097 13 C 0.051 3.949 14 H 0.034 0.966 15 C -0.515 4.515 16 H 0.055 0.945 17 C 0.062 3.938 18 N -0.888 5.888 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.119 4.119 24 C 0.461 3.539 25 F -0.178 7.178 26 F -0.181 7.181 27 F -0.180 7.180 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.395 0.605 34 H 0.393 0.607 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.260 0.740 40 H 0.053 0.947 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.484 0.974 -24.440 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.170 4.170 3 H 0.140 0.860 4 C 0.018 3.982 5 N -0.408 5.408 6 C 0.402 3.598 7 O -0.467 6.467 8 N -0.385 5.385 9 C 0.049 3.951 10 H 0.105 0.895 11 C -0.174 4.174 12 C -0.136 4.136 13 C 0.032 3.968 14 H 0.052 0.948 15 C -0.553 4.553 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.526 5.526 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.158 4.158 24 C 0.406 3.594 25 F -0.160 7.160 26 F -0.163 7.163 27 F -0.161 7.161 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.230 0.770 34 H 0.226 0.774 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.736 -0.068 -24.192 24.479 hybrid contribution -0.562 1.410 0.379 1.564 sum -4.297 1.342 -23.813 24.235 Atomic orbital electron populations 1.21909 0.90814 1.04400 1.04062 1.22669 1.00307 1.02283 0.91754 0.86010 1.21035 1.00926 0.95098 0.81172 1.44934 1.62565 1.28814 1.04447 1.15961 0.79941 0.83649 0.80223 1.90932 1.45153 1.24935 1.85631 1.45414 1.60049 1.27500 1.05502 1.21997 0.95574 0.99088 0.78476 0.89510 1.22638 0.96107 0.99388 0.99225 1.22095 1.00517 1.00781 0.90191 1.19407 0.90063 0.97382 0.89926 0.94814 1.21111 1.14497 1.21528 0.98144 0.92661 1.24990 0.94980 0.95813 0.98201 1.69970 1.21299 1.39142 1.22195 0.86646 0.78498 0.81514 0.81620 1.20736 1.21310 1.19993 1.22874 0.97251 0.99478 0.96162 1.20301 0.75620 0.77808 0.85686 1.93200 1.88378 1.37650 1.96767 1.93190 1.88484 1.80735 1.53868 1.93217 1.29773 1.96393 1.96752 0.90743 0.90049 0.90874 0.90325 0.90189 0.77043 0.77368 0.93137 0.93015 0.92965 0.92595 0.93033 0.92843 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 8.82 37.16 0.33 -0.41 16 2 C -0.15 -0.89 2.40 -90.61 -0.22 -1.10 16 3 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.14 1.27 4.82 -4.04 -0.02 1.25 16 5 N -0.75 -7.19 5.29 -65.22 -0.34 -7.54 16 6 C 0.70 10.25 8.57 -86.91 -0.74 9.50 16 7 O -0.59 -11.30 15.99 5.29 0.08 -11.22 16 8 N -0.73 -10.28 5.10 -57.06 -0.29 -10.57 16 9 C 0.15 2.71 3.22 -66.28 -0.21 2.50 16 10 H 0.09 1.69 7.56 -51.93 -0.39 1.30 16 11 C -0.13 -2.58 6.54 -25.61 -0.17 -2.75 16 12 C -0.10 -2.22 5.60 -25.61 -0.14 -2.36 16 13 C 0.05 1.23 2.73 -90.10 -0.25 0.98 16 14 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 15 C -0.51 -13.64 8.36 -34.44 -0.29 -13.93 16 16 H 0.06 1.43 7.77 -52.48 -0.41 1.02 16 17 C 0.06 1.69 5.35 -17.82 -0.10 1.59 16 18 N -0.89 -25.28 12.63 55.43 0.70 -24.58 16 19 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 23 C -0.12 -2.28 5.90 -24.73 -0.15 -2.43 16 24 C 0.46 3.53 2.69 37.16 0.10 3.63 16 25 F -0.18 -1.57 16.37 2.25 0.04 -1.54 16 26 F -0.18 -1.42 16.80 2.25 0.04 -1.38 16 27 F -0.18 -1.63 16.71 2.25 0.04 -1.59 16 28 H 0.07 0.41 7.80 -51.93 -0.41 0.00 16 29 H 0.08 0.32 7.18 -51.93 -0.37 -0.06 16 30 H 0.07 0.30 7.80 -51.93 -0.41 -0.11 16 31 H 0.08 0.81 7.66 -51.93 -0.40 0.41 16 32 H 0.08 0.80 7.94 -51.93 -0.41 0.39 16 33 H 0.40 2.49 7.67 -40.82 -0.31 2.17 16 34 H 0.39 4.33 8.58 -40.82 -0.35 3.98 16 35 H 0.05 0.90 8.04 -51.93 -0.42 0.49 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.05 1.25 7.83 -51.93 -0.41 0.85 16 38 H 0.06 1.38 8.06 -51.93 -0.42 0.96 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -31.42 347.43 -7.31 -38.74 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.94 Total: 2.11 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.85 Total: -3.51 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.06 Total: -42.69 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.11 Total: -4.51 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.42 -7.31 -38.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454803343.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.368 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds