Wall clock time and date at job start Tue Mar 31 2020 09:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47327 * 2 1 4 4 C 1.53001 * 109.47608 * 239.99378 * 2 1 3 5 5 N 1.46500 * 109.46777 * 65.00506 * 4 2 1 6 6 C 1.34780 * 119.99706 * 180.02562 * 5 4 2 7 7 O 1.21581 * 120.00000 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99711 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99923 * 179.97438 * 8 6 5 10 10 H 1.09003 * 110.54083 * 327.61222 * 9 8 6 11 11 C 1.54268 * 110.48389 * 90.22208 * 9 8 6 12 12 C 1.53876 * 106.59607 * 142.28972 * 11 9 8 13 13 C 1.54268 * 106.59992 * 0.02562 * 12 11 9 14 14 H 1.08996 * 110.48777 * 95.06810 * 13 12 11 15 15 C 1.50698 * 110.48760 * 217.71212 * 13 12 11 16 16 H 1.08006 * 120.00324 * 114.76926 * 15 13 12 17 17 C 1.37879 * 120.00291 * 294.77471 * 15 13 12 18 18 N 1.31513 * 119.99457 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00343 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46950 * 59.99442 * 19 17 15 21 21 H 1.48498 * 109.47120 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46660 * 299.99505 * 19 17 15 23 23 C 1.54882 * 110.48722 * 205.00109 * 9 8 6 24 24 C 1.53002 * 109.46820 * 119.99475 * 2 1 3 25 25 F 1.39898 * 109.47318 * 179.97438 * 24 2 1 26 26 F 1.39898 * 109.47275 * 300.00178 * 24 2 1 27 27 F 1.39904 * 109.47145 * 60.00228 * 24 2 1 28 28 H 1.08996 * 109.47327 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47241 * 300.00911 * 1 2 3 30 30 H 1.09002 * 109.46574 * 60.00566 * 1 2 3 31 31 H 1.08998 * 109.47021 * 305.00504 * 4 2 1 32 32 H 1.09003 * 109.47184 * 185.00492 * 4 2 1 33 33 H 0.96999 * 120.00479 * 359.97438 * 5 4 2 34 34 H 0.97002 * 119.99982 * 359.97438 * 8 6 5 35 35 H 1.08994 * 110.03288 * 23.00936 * 11 9 8 36 36 H 1.09000 * 110.07311 * 261.59259 * 11 9 8 37 37 H 1.08998 * 110.03805 * 240.71854 * 12 11 9 38 38 H 1.09000 * 110.07667 * 119.30450 * 12 11 9 39 39 H 0.97000 * 119.99685 * 180.02562 * 18 17 15 40 40 H 1.08994 * 110.76048 * 85.06650 * 23 9 8 41 41 H 1.09004 * 110.75771 * 321.69045 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 1.6526 0.0352 -2.4423 6 6 1.9959 -0.4139 -3.6659 7 8 2.6274 -1.4466 -3.7793 8 7 1.6390 0.2819 -4.7636 9 6 2.0125 -0.2059 -6.0935 10 1 2.9676 -0.7298 -6.0544 11 6 0.9131 -1.1289 -6.6585 12 6 0.8224 -0.8329 -8.1658 13 6 1.8704 0.2592 -8.4643 14 1 2.8021 -0.1899 -8.8080 15 6 1.3426 1.2309 -9.4881 16 1 1.1659 2.2607 -9.2146 17 6 1.0850 0.8054 -10.7740 18 7 1.3004 -0.4485 -11.1072 19 14 0.4314 2.0100 -12.0433 20 1 1.4035 3.1186 -12.2201 21 1 0.2396 1.3091 -13.3383 22 1 -0.8680 2.5601 -11.5805 23 6 2.0790 0.9675 -7.1024 24 6 2.0399 -0.7212 1.2493 25 9 3.4389 -0.7217 1.2492 26 9 1.5735 -0.0616 2.3915 27 9 1.5736 -2.0402 1.2494 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 1.6054 -1.7199 -1.2950 32 1 3.1264 -0.7996 -1.2054 33 1 1.1485 0.8589 -2.3519 34 1 1.1348 1.1057 -4.6731 35 1 -0.0404 -0.9116 -6.1774 36 1 1.1825 -2.1729 -6.4986 37 1 -0.1751 -0.4719 -8.4162 38 1 1.0482 -1.7327 -8.7381 39 1 1.1195 -0.7478 -12.0119 40 1 3.0536 1.4539 -7.0655 41 1 1.2805 1.6851 -6.9135 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454803344.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:41:42 Heat of formation + Delta-G solvation = -209.058862 kcal Electronic energy + Delta-G solvation = -25471.181084 eV Core-core repulsion = 21162.994808 eV Total energy + Delta-G solvation = -4308.186276 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.50953 -47.99840 -47.95410 -40.01835 -37.56323 -36.40398 -33.76021 -33.00876 -31.80450 -28.15809 -27.60063 -26.93594 -25.64249 -23.74459 -21.69948 -21.09234 -19.92487 -19.18063 -18.89614 -18.79685 -18.40708 -17.29950 -16.65312 -15.96485 -15.78715 -15.00814 -14.97276 -14.67107 -14.62671 -14.39127 -14.32044 -14.15347 -14.14280 -14.06594 -13.96014 -13.40827 -13.21988 -12.51024 -12.43098 -12.13905 -11.85970 -11.80394 -11.76422 -11.21092 -10.98313 -10.87084 -10.60302 -10.32864 -10.04710 -9.91306 -9.57886 -9.31990 -9.21394 -8.75557 -8.51352 -8.38594 -6.01380 -4.04708 2.17279 2.76460 3.30687 3.33215 3.36279 3.36528 3.37911 3.54826 3.57332 4.20365 4.32917 4.37889 4.43960 4.53077 5.06417 5.11478 5.27150 5.30472 5.41807 5.54274 5.55955 5.66663 5.84940 6.24764 6.30061 6.36068 6.51095 6.66889 6.71346 6.88087 6.93620 6.99227 7.30049 7.32820 7.70397 7.87412 8.01183 8.11598 8.43209 8.72486 8.97922 9.59273 11.08398 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.041730 B = 0.002245 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.811746 B =12468.371822 C =12636.576767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.150 4.150 3 H 0.122 0.878 4 C 0.143 3.857 5 N -0.750 5.750 6 C 0.702 3.298 7 O -0.589 6.589 8 N -0.732 5.732 9 C 0.153 3.847 10 H 0.087 0.913 11 C -0.134 4.134 12 C -0.097 4.097 13 C 0.052 3.948 14 H 0.034 0.966 15 C -0.515 4.515 16 H 0.055 0.945 17 C 0.062 3.938 18 N -0.888 5.888 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.119 4.119 24 C 0.461 3.539 25 F -0.180 7.180 26 F -0.181 7.181 27 F -0.178 7.178 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.395 0.605 34 H 0.393 0.607 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.261 0.739 40 H 0.053 0.947 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.908 2.525 24.577 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.170 4.170 3 H 0.140 0.860 4 C 0.018 3.982 5 N -0.408 5.408 6 C 0.402 3.598 7 O -0.467 6.467 8 N -0.385 5.385 9 C 0.049 3.951 10 H 0.105 0.895 11 C -0.173 4.173 12 C -0.136 4.136 13 C 0.033 3.967 14 H 0.052 0.948 15 C -0.554 4.554 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.526 5.526 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.158 4.158 24 C 0.406 3.594 25 F -0.161 7.161 26 F -0.163 7.163 27 F -0.160 7.160 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.230 0.770 34 H 0.226 0.774 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.303 1.389 24.316 24.390 hybrid contribution -0.822 1.269 -0.384 1.560 sum -2.125 2.658 23.932 24.173 Atomic orbital electron populations 1.21908 0.90809 1.04425 1.04066 1.22665 1.00316 1.02265 0.91752 0.86016 1.21035 1.00900 0.95126 0.81172 1.44934 1.62531 1.28844 1.04451 1.15961 0.79971 0.83637 0.80206 1.90932 1.45333 1.24716 1.85669 1.45413 1.60048 1.27521 1.05482 1.21998 0.98379 0.96356 0.78407 0.89512 1.22637 0.97349 0.98479 0.98873 1.22096 1.00855 1.00292 0.90343 1.19401 0.95166 0.92701 0.89472 0.94814 1.21075 1.43852 0.95635 0.94803 0.92713 1.24987 0.95559 0.95074 0.98333 1.69959 1.48307 1.14969 1.19377 0.86707 0.79434 0.81277 0.80836 1.20324 1.21361 1.20353 1.22875 1.00201 0.95997 0.96703 1.20301 0.75607 0.77821 0.85687 1.93214 1.29786 1.96396 1.96751 1.93189 1.88473 1.80738 1.53869 1.93204 1.88385 1.37638 1.96767 0.90732 0.90870 0.90046 0.90186 0.90326 0.77044 0.77369 0.93142 0.93019 0.92969 0.92596 0.92972 0.92842 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 8.82 37.16 0.33 -0.43 16 2 C -0.15 -0.89 2.40 -90.62 -0.22 -1.10 16 3 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 4 C 0.14 1.27 4.82 -4.04 -0.02 1.25 16 5 N -0.75 -7.20 5.29 -65.22 -0.34 -7.54 16 6 C 0.70 10.25 8.57 -86.91 -0.74 9.51 16 7 O -0.59 -11.31 15.99 5.29 0.08 -11.22 16 8 N -0.73 -10.29 5.10 -57.06 -0.29 -10.58 16 9 C 0.15 2.71 3.22 -66.28 -0.21 2.50 16 10 H 0.09 1.70 7.56 -51.93 -0.39 1.30 16 11 C -0.13 -2.57 6.54 -25.61 -0.17 -2.74 16 12 C -0.10 -2.22 5.60 -25.61 -0.14 -2.36 16 13 C 0.05 1.24 2.73 -90.10 -0.25 0.99 16 14 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 15 C -0.52 -13.66 8.36 -34.44 -0.29 -13.95 16 16 H 0.05 1.42 7.77 -52.48 -0.41 1.01 16 17 C 0.06 1.70 5.35 -17.82 -0.10 1.60 16 18 N -0.89 -25.28 12.63 55.43 0.70 -24.58 16 19 Si 0.89 20.87 29.54 -169.99 -5.02 15.84 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.12 -2.29 5.90 -24.73 -0.15 -2.43 16 24 C 0.46 3.52 2.69 37.16 0.10 3.62 16 25 F -0.18 -1.61 16.71 2.25 0.04 -1.58 16 26 F -0.18 -1.42 16.80 2.25 0.04 -1.38 16 27 F -0.18 -1.58 16.37 2.25 0.04 -1.55 16 28 H 0.07 0.42 7.80 -51.93 -0.41 0.02 16 29 H 0.07 0.30 7.80 -51.93 -0.41 -0.10 16 30 H 0.08 0.33 7.18 -51.93 -0.37 -0.04 16 31 H 0.08 0.81 7.94 -51.93 -0.41 0.40 16 32 H 0.08 0.80 7.66 -51.93 -0.40 0.40 16 33 H 0.40 2.49 7.67 -40.82 -0.31 2.17 16 34 H 0.39 4.33 8.58 -40.82 -0.35 3.98 16 35 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 1.25 7.83 -51.93 -0.41 0.84 16 38 H 0.06 1.38 8.06 -51.93 -0.42 0.96 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 LS Contribution 347.42 15.07 5.24 5.24 Total: -1.00 -31.39 347.42 -7.31 -38.70 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.94 Total: 2.17 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.85 Total: -3.53 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.06 Total: -42.69 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.11 Total: -4.50 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.39 -7.31 -38.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454803344.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.360 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds