Wall clock time and date at job start Tue Mar 31 2020 09:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 5 5 C 1.34784 * 120.00075 * 85.00024 * 4 2 1 6 6 O 1.21699 * 119.99570 * 0.02562 * 5 4 2 7 7 C 1.46649 * 120.00337 * 180.02562 * 5 4 2 8 8 C 1.36549 * 125.98709 * 179.71883 * 7 5 4 9 9 C 1.40364 * 106.70555 * 179.85083 * 8 7 5 10 10 C 1.35127 * 107.11995 * 0.40697 * 9 8 7 11 11 O 1.33938 * 108.76404 * 359.74503 * 10 9 8 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.21279 * 120.00072 * 119.99863 * 12 2 1 14 14 N 1.34777 * 119.99762 * 300.00068 * 12 2 1 15 15 C 1.46496 * 120.00258 * 180.02562 * 14 12 2 16 16 C 1.52993 * 109.47551 * 179.97438 * 15 14 12 17 17 C 1.53005 * 109.46914 * 299.99536 * 16 15 14 18 18 C 1.53002 * 109.47392 * 59.99666 * 16 15 14 19 19 C 1.50696 * 109.47429 * 179.97438 * 16 15 14 20 20 H 1.07999 * 119.99822 * 0.02562 * 19 16 15 21 21 C 1.37876 * 120.00339 * 179.97438 * 19 16 15 22 22 N 1.31514 * 119.99769 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 120.00300 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47112 * 90.00199 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00310 * 23 21 19 26 26 H 1.48498 * 109.47011 * 329.99931 * 23 21 19 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.96996 * 120.00792 * 265.00493 * 4 2 1 31 31 H 1.07995 * 126.64849 * 359.95791 * 8 7 5 32 32 H 1.08006 * 126.44326 * 180.15071 * 9 8 7 33 33 H 1.07992 * 125.62134 * 179.70840 * 10 9 8 34 34 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 35 35 H 1.09004 * 109.46875 * 299.99676 * 15 14 12 36 36 H 1.09000 * 109.47024 * 59.99522 * 15 14 12 37 37 H 1.09002 * 109.46935 * 60.00150 * 17 16 15 38 38 H 1.08998 * 109.47061 * 179.97438 * 17 16 15 39 39 H 1.09000 * 109.47360 * 300.00175 * 17 16 15 40 40 H 1.08996 * 109.46698 * 60.00223 * 18 16 15 41 41 H 1.09001 * 109.47142 * 180.02562 * 18 16 15 42 42 H 1.09002 * 109.47097 * 300.00241 * 18 16 15 43 43 H 0.97005 * 120.00032 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3572 6 8 1.8580 1.1625 -2.4117 7 6 2.6354 -0.7099 -3.5547 8 6 2.8069 -0.1523 -4.7893 9 6 3.2914 -1.1687 -5.6273 10 6 3.3846 -2.2903 -4.8793 11 8 2.9884 -2.0097 -3.6310 12 6 2.0324 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1955 -0.9402 3.6508 16 6 1.6859 -0.2187 4.9000 17 6 2.1960 1.2238 4.8994 18 6 0.1559 -0.2187 4.9005 19 6 2.1882 -0.9291 6.1304 20 1 2.8092 -1.8072 6.0313 21 6 1.8559 -0.4575 7.3827 22 7 1.1001 0.6120 7.5033 23 14 2.4791 -1.3377 8.9079 24 1 3.7875 -0.7629 9.3113 25 1 1.5015 -1.1663 10.0125 26 1 2.6435 -2.7837 8.6125 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.2490 -1.6318 -1.1526 31 1 2.6097 0.8726 -5.0668 32 1 3.5390 -1.0735 -6.6743 33 1 3.7223 -3.2541 -5.2303 34 1 1.1494 0.5389 2.5436 35 1 1.8325 -1.9680 3.6509 36 1 3.2855 -0.9398 3.6506 37 1 1.8323 1.7374 4.0095 38 1 1.8326 1.7380 5.7892 39 1 3.2860 1.2238 4.8990 40 1 -0.2073 -1.2464 4.9009 41 1 -0.2071 0.2957 5.7903 42 1 -0.2078 0.2949 4.0106 43 1 0.8660 0.9436 8.3844 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458029413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:43 Heat of formation + Delta-G solvation = -64.333191 kcal Electronic energy + Delta-G solvation = -25172.992135 eV Core-core repulsion = 21412.938375 eV Total energy + Delta-G solvation = -3760.053760 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.95720 -40.25788 -38.99025 -36.54100 -35.09976 -33.52008 -33.34232 -31.64152 -30.69155 -29.54099 -25.90963 -25.76712 -25.27769 -24.53870 -22.82654 -22.02940 -20.54221 -20.15987 -19.10803 -18.81031 -17.10417 -16.69713 -16.52493 -16.19362 -15.69100 -15.31687 -14.93940 -14.72727 -14.51652 -14.08924 -13.62419 -13.39743 -13.29327 -13.12410 -12.97987 -12.92848 -12.52481 -12.37563 -12.23589 -11.71832 -11.41601 -11.22766 -10.90077 -10.72979 -10.54716 -10.43194 -10.37630 -10.23722 -9.76659 -9.68414 -9.47273 -9.26259 -8.96973 -8.82978 -8.55399 -8.38316 -6.05354 -4.15643 0.78208 2.04673 2.36841 2.80672 2.86537 2.97199 3.26311 3.33540 3.36934 3.63828 4.36857 4.38411 4.58513 4.68933 4.86035 4.95383 5.07569 5.21552 5.31088 5.44400 5.48284 5.57240 5.66488 5.99204 6.01559 6.07744 6.17110 6.25657 6.45168 6.51850 6.68722 6.78096 6.86446 6.92023 6.97028 7.26800 7.30561 7.51583 7.65862 7.80585 7.92907 7.97098 8.09683 8.33375 8.49319 8.84775 9.50416 10.96039 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.034628 B = 0.002503 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.399689 B =11182.489020 C =11619.146796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.122 3.878 3 H 0.116 0.884 4 N -0.698 5.698 5 C 0.606 3.394 6 O -0.522 6.522 7 C -0.076 4.076 8 C -0.121 4.121 9 C -0.227 4.227 10 C -0.005 4.005 11 O -0.161 6.161 12 C 0.502 3.498 13 O -0.548 6.548 14 N -0.707 5.707 15 C 0.131 3.869 16 C 0.056 3.944 17 C -0.132 4.132 18 C -0.131 4.131 19 C -0.506 4.506 20 H 0.057 0.943 21 C 0.066 3.934 22 N -0.885 5.885 23 Si 0.894 3.106 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.415 0.585 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.211 0.789 34 H 0.401 0.599 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.007 0.993 38 H 0.086 0.914 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.086 0.914 42 H 0.006 0.994 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.035 -1.914 -21.871 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.014 3.986 3 H 0.134 0.866 4 N -0.351 5.351 5 C 0.392 3.608 6 O -0.400 6.400 7 C -0.128 4.128 8 C -0.141 4.141 9 C -0.246 4.246 10 C -0.075 4.075 11 O -0.056 6.056 12 C 0.286 3.714 13 O -0.427 6.427 14 N -0.358 5.358 15 C 0.009 3.991 16 C 0.055 3.945 17 C -0.190 4.190 18 C -0.189 4.189 19 C -0.545 4.545 20 H 0.076 0.924 21 C -0.135 4.135 22 N -0.524 5.524 23 Si 0.722 3.278 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.253 0.747 31 H 0.179 0.821 32 H 0.174 0.826 33 H 0.227 0.773 34 H 0.236 0.764 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.026 0.974 38 H 0.105 0.895 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.105 0.895 42 H 0.025 0.975 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.221 -1.867 -21.499 21.581 hybrid contribution 0.294 -0.498 0.673 0.888 sum 0.515 -2.366 -20.826 20.966 Atomic orbital electron populations 1.22138 0.92515 1.03378 1.03779 1.20889 0.95930 0.98186 0.83591 0.86617 1.45645 1.66034 1.15174 1.08214 1.16501 0.77631 0.85643 0.81024 1.90887 1.50985 1.14103 1.84068 1.22025 1.10956 0.82705 0.97100 1.21984 0.99777 1.01291 0.91083 1.21872 1.08003 0.92899 1.01862 1.24455 1.00790 1.00964 0.81321 1.84110 1.63639 1.26411 1.31428 1.20378 0.80970 0.85019 0.85013 1.90676 1.38647 1.26677 1.86679 1.46256 1.52098 1.31718 1.05684 1.21788 0.98283 0.95861 0.83152 1.18366 0.92869 0.92778 0.90477 1.21849 0.98651 0.98310 1.00194 1.21839 0.97674 0.99224 1.00170 1.20961 1.31569 1.12133 0.89842 0.92442 1.24880 0.94829 0.94930 0.98875 1.69799 1.36569 1.22715 1.23286 0.86565 0.78572 0.80129 0.82570 1.20706 1.21252 1.19920 0.90884 0.90370 0.91585 0.74702 0.82147 0.82550 0.77292 0.76356 0.92468 0.92524 0.97446 0.89506 0.95386 0.95382 0.89529 0.97464 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.38 37.16 0.35 -1.43 16 2 C 0.12 1.61 2.98 -69.08 -0.21 1.40 16 3 H 0.12 1.50 7.58 -51.93 -0.39 1.11 16 4 N -0.70 -9.10 4.95 -56.25 -0.28 -9.37 16 5 C 0.61 8.11 7.75 -12.86 -0.10 8.01 16 6 O -0.52 -8.08 16.53 5.19 0.09 -8.00 16 7 C -0.08 -0.88 7.13 -36.80 -0.26 -1.15 16 8 C -0.12 -1.20 10.62 -39.39 -0.42 -1.62 16 9 C -0.23 -1.71 10.87 -39.89 -0.43 -2.14 16 10 C -0.01 -0.04 12.08 29.63 0.36 0.32 16 11 O -0.16 -1.68 10.40 4.98 0.05 -1.63 16 12 C 0.50 8.16 7.22 -10.98 -0.08 8.08 16 13 O -0.55 -10.60 15.84 5.56 0.09 -10.51 16 14 N -0.71 -11.83 4.85 -60.30 -0.29 -12.13 16 15 C 0.13 2.67 4.50 -4.05 -0.02 2.66 16 16 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 17 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 18 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 19 C -0.51 -12.98 8.01 -34.44 -0.28 -13.26 16 20 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 21 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 22 N -0.89 -23.22 9.35 55.43 0.52 -22.70 16 23 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.79 7.56 -51.93 -0.39 0.40 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.42 5.37 7.55 -40.82 -0.31 5.06 16 31 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 33 H 0.21 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.40 6.03 5.58 -40.82 -0.23 5.81 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 38 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 42 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 43 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -29.90 358.34 -6.12 -36.02 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.01 Total: 8.96 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -0.66 Total: -1.49 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.05 Total: -44.20 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: 0.23 Total: -20.14 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.90 -6.12 -36.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458029413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.313 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds