Wall clock time and date at job start Tue Mar 31 2020 09:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 5 5 C 1.34784 * 120.00075 * 85.00024 * 4 2 1 6 6 O 1.21699 * 119.99570 * 0.02562 * 5 4 2 7 7 C 1.46649 * 120.00337 * 180.02562 * 5 4 2 8 8 C 1.36549 * 125.98709 * 179.71883 * 7 5 4 9 9 C 1.40364 * 106.70555 * 179.85083 * 8 7 5 10 10 C 1.35127 * 107.11995 * 0.40697 * 9 8 7 11 11 O 1.33938 * 108.76404 * 359.74503 * 10 9 8 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.21279 * 120.00072 * 119.99863 * 12 2 1 14 14 N 1.34777 * 119.99762 * 300.00068 * 12 2 1 15 15 C 1.46496 * 120.00258 * 180.02562 * 14 12 2 16 16 C 1.52993 * 109.47551 * 179.97438 * 15 14 12 17 17 C 1.53005 * 109.46914 * 299.99536 * 16 15 14 18 18 C 1.53002 * 109.47392 * 59.99666 * 16 15 14 19 19 C 1.50696 * 109.47429 * 179.97438 * 16 15 14 20 20 H 1.07999 * 119.99822 * 0.02562 * 19 16 15 21 21 C 1.37876 * 120.00339 * 179.97438 * 19 16 15 22 22 N 1.31514 * 119.99769 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 120.00300 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47112 * 90.00199 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00310 * 23 21 19 26 26 H 1.48498 * 109.47011 * 329.99931 * 23 21 19 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.96996 * 120.00792 * 265.00493 * 4 2 1 31 31 H 1.07995 * 126.64849 * 359.95791 * 8 7 5 32 32 H 1.08006 * 126.44326 * 180.15071 * 9 8 7 33 33 H 1.07992 * 125.62134 * 179.70840 * 10 9 8 34 34 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 35 35 H 1.09004 * 109.46875 * 299.99676 * 15 14 12 36 36 H 1.09000 * 109.47024 * 59.99522 * 15 14 12 37 37 H 1.09002 * 109.46935 * 60.00150 * 17 16 15 38 38 H 1.08998 * 109.47061 * 179.97438 * 17 16 15 39 39 H 1.09000 * 109.47360 * 300.00175 * 17 16 15 40 40 H 1.08996 * 109.46698 * 60.00223 * 18 16 15 41 41 H 1.09001 * 109.47142 * 180.02562 * 18 16 15 42 42 H 1.09002 * 109.47097 * 300.00241 * 18 16 15 43 43 H 0.97005 * 120.00032 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3572 6 8 1.8580 1.1625 -2.4117 7 6 2.6354 -0.7099 -3.5547 8 6 2.8069 -0.1523 -4.7893 9 6 3.2914 -1.1687 -5.6273 10 6 3.3846 -2.2903 -4.8793 11 8 2.9884 -2.0097 -3.6310 12 6 2.0324 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1955 -0.9402 3.6508 16 6 1.6859 -0.2187 4.9000 17 6 2.1960 1.2238 4.8994 18 6 0.1559 -0.2187 4.9005 19 6 2.1882 -0.9291 6.1304 20 1 2.8092 -1.8072 6.0313 21 6 1.8559 -0.4575 7.3827 22 7 1.1001 0.6120 7.5033 23 14 2.4791 -1.3377 8.9079 24 1 3.7875 -0.7629 9.3113 25 1 1.5015 -1.1663 10.0125 26 1 2.6435 -2.7837 8.6125 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.2490 -1.6318 -1.1526 31 1 2.6097 0.8726 -5.0668 32 1 3.5390 -1.0735 -6.6743 33 1 3.7223 -3.2541 -5.2303 34 1 1.1494 0.5389 2.5436 35 1 1.8325 -1.9680 3.6509 36 1 3.2855 -0.9398 3.6506 37 1 1.8323 1.7374 4.0095 38 1 1.8326 1.7380 5.7892 39 1 3.2860 1.2238 4.8990 40 1 -0.2073 -1.2464 4.9009 41 1 -0.2071 0.2957 5.7903 42 1 -0.2078 0.2949 4.0106 43 1 0.8660 0.9436 8.3844 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458029413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:42 Heat of formation + Delta-G solvation = -84.225359 kcal Electronic energy + Delta-G solvation = -25173.854724 eV Core-core repulsion = 21412.938375 eV Total energy + Delta-G solvation = -3760.916349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.65361 -41.46016 -40.21040 -38.20738 -36.22019 -35.12649 -34.05809 -33.06506 -32.03811 -30.36801 -27.55602 -27.52242 -26.98881 -25.67723 -23.85231 -22.70843 -21.51345 -21.36390 -20.64742 -19.96780 -18.25674 -17.80178 -17.64570 -17.36102 -17.05435 -16.61464 -16.47863 -16.10342 -15.70430 -15.26280 -14.92359 -14.79966 -14.49961 -14.19405 -14.00467 -13.94277 -13.70851 -13.55345 -13.36424 -13.17264 -13.08894 -12.73093 -12.66484 -12.59954 -12.24355 -12.12825 -11.58639 -11.47647 -11.29912 -11.05260 -10.96323 -10.69460 -10.44418 -10.39322 -10.00975 -9.67703 -8.01790 -6.17307 -0.00691 1.41225 1.42669 1.45862 1.48757 1.52672 1.54912 1.95564 2.05119 2.36578 2.49682 3.22075 3.52435 3.71377 3.95732 3.95984 4.04425 4.11445 4.41034 4.51468 4.57587 4.62892 4.71813 4.74217 4.90433 4.94930 4.98737 5.06792 5.09137 5.12568 5.14066 5.21096 5.33050 5.39991 5.55237 5.68289 5.68780 5.81978 6.16593 6.22550 6.29439 6.44003 6.51858 6.85972 6.86956 7.14491 7.50434 8.96944 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.034628 B = 0.002503 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.399689 B =11182.489020 C =11619.146796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.130 3.870 3 H 0.121 0.879 4 N -0.699 5.699 5 C 0.606 3.394 6 O -0.551 6.551 7 C -0.114 4.114 8 C -0.119 4.119 9 C -0.233 4.233 10 C 0.009 3.991 11 O -0.176 6.176 12 C 0.506 3.494 13 O -0.579 6.579 14 N -0.700 5.700 15 C 0.148 3.852 16 C 0.051 3.949 17 C -0.124 4.124 18 C -0.122 4.122 19 C -0.527 4.527 20 H 0.045 0.955 21 C 0.028 3.972 22 N -0.899 5.899 23 Si 0.944 3.056 24 H -0.280 1.280 25 H -0.284 1.284 26 H -0.275 1.275 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.415 0.585 31 H 0.164 0.836 32 H 0.186 0.814 33 H 0.253 0.747 34 H 0.411 0.589 35 H 0.044 0.956 36 H 0.040 0.960 37 H 0.038 0.962 38 H 0.062 0.938 39 H 0.017 0.983 40 H 0.020 0.980 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 -2.273 -23.801 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 H 0.139 0.861 4 N -0.351 5.351 5 C 0.395 3.605 6 O -0.432 6.432 7 C -0.166 4.166 8 C -0.139 4.139 9 C -0.251 4.251 10 C -0.060 4.060 11 O -0.072 6.072 12 C 0.292 3.708 13 O -0.460 6.460 14 N -0.351 5.351 15 C 0.024 3.976 16 C 0.050 3.950 17 C -0.182 4.182 18 C -0.180 4.180 19 C -0.566 4.566 20 H 0.063 0.937 21 C -0.172 4.172 22 N -0.537 5.537 23 Si 0.771 3.229 24 H -0.206 1.206 25 H -0.209 1.209 26 H -0.200 1.200 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.253 0.747 31 H 0.181 0.819 32 H 0.204 0.796 33 H 0.269 0.731 34 H 0.249 0.751 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.037 0.963 40 H 0.039 0.961 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.129 -2.215 -23.436 23.540 hybrid contribution 0.374 -0.445 1.161 1.298 sum 0.503 -2.660 -22.275 22.439 Atomic orbital electron populations 1.22126 0.90619 1.03763 1.04700 1.20858 0.97229 0.97675 0.82049 0.86145 1.45663 1.66110 1.15103 1.08184 1.16705 0.77010 0.85398 0.81423 1.90854 1.52486 1.15191 1.84652 1.21773 1.14069 0.83706 0.97019 1.22284 0.98615 1.02043 0.91000 1.22243 1.07713 0.92069 1.03098 1.25420 0.98161 1.02537 0.79916 1.84100 1.64104 1.25801 1.33147 1.20855 0.79986 0.84456 0.85485 1.90664 1.39968 1.28211 1.87136 1.46037 1.52290 1.31876 1.04944 1.21330 0.97157 0.95277 0.83803 1.18364 0.93428 0.92916 0.90274 1.21705 0.97951 0.97990 1.00509 1.21684 0.96912 0.98850 1.00545 1.21261 1.31644 1.12139 0.91518 0.93675 1.25443 0.95189 0.95618 1.00957 1.69907 1.36968 1.23275 1.23570 0.85780 0.78037 0.79080 0.80019 1.20646 1.20922 1.20036 0.90417 0.88966 0.91472 0.74721 0.81855 0.79632 0.73108 0.75086 0.93712 0.94144 0.94325 0.91895 0.96340 0.96071 0.91997 0.94149 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.38 71.98 0.68 -2.48 16 2 C 0.13 3.29 2.98 44.25 0.13 3.42 16 3 H 0.12 2.99 7.58 -2.39 -0.02 2.97 16 4 N -0.70 -17.97 4.95 -450.09 -2.23 -20.19 16 5 C 0.61 16.16 7.75 86.44 0.67 16.83 16 6 O -0.55 -17.02 16.53 -4.35 -0.07 -17.09 16 7 C -0.11 -2.60 7.13 24.07 0.17 -2.43 16 8 C -0.12 -2.22 10.62 22.39 0.24 -1.98 16 9 C -0.23 -2.85 10.87 22.07 0.24 -2.61 16 10 C 0.01 0.10 12.08 67.10 0.81 0.91 16 11 O -0.18 -3.44 10.40 -5.11 -0.05 -3.49 16 12 C 0.51 16.04 7.22 87.66 0.63 16.68 16 13 O -0.58 -22.34 15.84 -3.03 -0.05 -22.39 16 14 N -0.70 -22.58 4.85 -463.07 -2.25 -24.83 16 15 C 0.15 6.00 4.50 86.38 0.39 6.39 16 16 C 0.05 2.27 0.50 -52.93 -0.03 2.25 16 17 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 18 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 19 C -0.53 -27.29 8.01 25.60 0.21 -27.08 16 20 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 21 C 0.03 1.44 5.15 84.65 0.44 1.88 16 22 N -0.90 -47.30 9.35 21.45 0.20 -47.10 16 23 Si 0.94 42.16 29.54 68.60 2.03 44.19 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.09 1.63 7.56 -2.39 -0.02 1.61 16 29 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.42 10.72 7.55 -92.71 -0.70 10.02 16 31 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 33 H 0.25 0.40 8.06 -2.91 -0.02 0.38 16 34 H 0.41 11.46 5.58 -92.71 -0.52 10.94 16 35 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 38 H 0.06 3.06 6.07 -2.39 -0.01 3.05 16 39 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 2.97 6.07 -2.39 -0.01 2.96 16 42 H 0.04 1.40 6.86 -2.39 -0.02 1.39 16 43 H 0.26 13.22 8.31 -92.70 -0.77 12.45 16 Total: -1.00 -65.19 358.34 3.14 -62.05 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: -0.17 Total: 26.50 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 5.74 Total: 2.36 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -4.27 Total: -92.12 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -0.17 Total: -42.98 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -65.19 3.14 -62.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458029413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.175 kcal (2) G-P(sol) polarization free energy of solvation -65.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds