Wall clock time and date at job start Tue Mar 31 2020 09:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47064 * 2 1 4 4 N 1.46499 * 109.46969 * 120.00133 * 2 1 3 5 5 C 1.46495 * 120.00043 * 294.51772 * 4 2 1 6 6 C 1.50702 * 109.47272 * 270.00009 * 5 4 2 7 7 H 1.07999 * 120.00117 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00238 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00270 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 119.99747 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47171 * 89.99849 * 10 8 6 12 12 H 1.48509 * 109.46834 * 209.99698 * 10 8 6 13 13 H 1.48493 * 109.47220 * 329.99576 * 10 8 6 14 14 C 1.34776 * 120.00101 * 114.52175 * 4 2 1 15 15 O 1.21284 * 120.00259 * 184.46934 * 14 4 2 16 16 C 1.50706 * 119.99776 * 4.46622 * 14 4 2 17 17 H 1.08996 * 109.47090 * 324.36452 * 16 14 4 18 18 C 1.52993 * 109.47288 * 84.36597 * 16 14 4 19 19 N 1.46502 * 109.46862 * 204.36734 * 16 14 4 20 20 C 1.34783 * 119.99881 * 154.99914 * 19 16 14 21 21 O 1.21615 * 119.99772 * 0.02562 * 20 19 16 22 22 C 1.47379 * 119.99597 * 179.97438 * 20 19 16 23 23 C 1.47028 * 127.18478 * 180.02562 * 22 20 19 24 24 C 1.34184 * 105.94882 * 179.97438 * 23 22 20 25 25 O 1.34215 * 109.12450 * 359.97438 * 24 23 22 26 26 C 1.33655 * 110.90946 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.47119 * 300.00028 * 1 2 3 28 28 H 1.08997 * 109.47491 * 59.99871 * 1 2 3 29 29 H 1.09005 * 109.47369 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46713 * 239.99689 * 2 1 3 31 31 H 1.09002 * 109.46625 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47402 * 299.99963 * 3 2 1 33 33 H 1.09001 * 109.46907 * 60.00473 * 3 2 1 34 34 H 1.08998 * 109.47497 * 30.00183 * 5 4 2 35 35 H 1.09002 * 109.47334 * 150.00371 * 5 4 2 36 36 H 0.96997 * 119.99625 * 179.97438 * 9 8 6 37 37 H 1.09009 * 109.46743 * 55.01706 * 18 16 14 38 38 H 1.08996 * 109.47227 * 175.01375 * 18 16 14 39 39 H 1.09004 * 109.47276 * 295.02154 * 18 16 14 40 40 H 0.96998 * 119.99969 * 335.00003 * 19 16 14 41 41 H 1.07999 * 127.02532 * 0.22585 * 23 22 20 42 42 H 1.07996 * 125.43102 * 180.02562 * 24 23 22 43 43 H 1.08003 * 125.79797 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7661 -0.1241 2.5234 6 6 2.8984 0.7963 2.9002 7 1 3.7232 0.9447 2.2190 8 6 2.8809 1.4497 4.1141 9 7 3.8687 2.2533 4.4428 10 14 1.4539 1.1936 5.2921 11 1 1.7540 0.0514 6.1923 12 1 1.2536 2.4225 6.1016 13 1 0.2197 0.9035 4.5190 14 6 2.6996 -1.8472 1.0756 15 8 3.0334 -2.4607 2.0672 16 6 3.0467 -2.3783 -0.2914 17 1 2.2376 -2.1514 -0.9856 18 6 4.3383 -1.7206 -0.7813 19 7 3.2349 -3.8293 -0.2183 20 6 3.0525 -4.5887 -1.3168 21 8 2.7322 -4.0693 -2.3687 22 6 3.2424 -6.0484 -1.2432 23 6 3.0872 -7.0208 -2.3351 24 6 3.3607 -8.2212 -1.8014 25 8 3.6639 -8.0664 -0.5031 26 6 3.5996 -6.7794 -0.1484 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.8318 0.4371 2.5074 35 1 1.6938 -0.9293 3.2545 36 1 3.8561 2.7132 5.2967 37 1 5.1260 -1.8727 -0.0432 38 1 4.6372 -2.1682 -1.7291 39 1 4.1721 -0.6523 -0.9202 40 1 3.4907 -4.2435 0.6207 41 1 2.8135 -6.8112 -3.3585 42 1 3.3409 -9.1615 -2.3321 43 1 3.7975 -6.3852 0.8375 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522963025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:07 Heat of formation + Delta-G solvation = -52.623386 kcal Electronic energy + Delta-G solvation = -25950.986471 eV Core-core repulsion = 22191.440486 eV Total energy + Delta-G solvation = -3759.545985 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.75149 -40.18710 -38.86413 -36.27660 -34.84915 -33.16570 -32.76887 -31.24577 -31.01614 -29.57415 -28.03161 -26.74630 -24.85852 -23.52261 -22.06456 -21.69265 -21.23559 -20.14683 -19.08713 -18.02712 -17.02024 -16.89999 -16.37606 -16.18631 -15.90098 -15.15438 -15.01435 -14.69577 -14.44339 -13.96122 -13.73326 -13.48880 -13.29626 -13.13422 -12.96071 -12.61898 -12.54603 -12.22651 -12.16933 -11.88914 -11.76682 -11.62465 -11.32304 -10.99450 -10.91700 -10.57201 -10.37675 -10.16063 -10.10519 -10.04000 -9.53132 -9.32187 -9.07828 -8.94733 -8.61860 -7.83225 -6.11969 -4.10156 1.15125 1.85169 2.67562 2.91412 3.15492 3.25812 3.27975 3.32118 3.34305 3.77023 4.36155 4.37959 4.46804 4.71535 4.87480 5.05595 5.21221 5.24730 5.25206 5.31987 5.42328 5.46798 5.57799 5.67819 5.73710 5.88844 5.93354 6.03734 6.04341 6.19247 6.25778 6.30331 6.37533 6.50248 6.69299 6.70578 6.90150 6.96822 7.24020 7.48610 7.56718 8.08515 8.18993 8.41892 8.75209 8.92205 9.48187 11.00978 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.003537 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.950422 B = 7913.738545 C = 8561.672125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.126 3.874 3 C -0.154 4.154 4 N -0.579 5.579 5 C 0.215 3.785 6 C -0.524 4.524 7 H 0.077 0.923 8 C 0.073 3.927 9 N -0.896 5.896 10 Si 0.872 3.128 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.509 3.491 15 O -0.542 6.542 16 C 0.123 3.877 17 H 0.108 0.892 18 C -0.155 4.155 19 N -0.707 5.707 20 C 0.589 3.411 21 O -0.540 6.540 22 C -0.234 4.234 23 C -0.164 4.164 24 C -0.044 4.044 25 O -0.175 6.175 26 C 0.025 3.975 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.032 0.968 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.407 0.593 41 H 0.160 0.840 42 H 0.208 0.792 43 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 -14.875 -12.834 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.022 3.978 3 C -0.212 4.212 4 N -0.309 5.309 5 C 0.095 3.905 6 C -0.562 4.562 7 H 0.096 0.904 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.699 3.301 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.294 3.706 15 O -0.420 6.420 16 C 0.015 3.985 17 H 0.126 0.874 18 C -0.214 4.214 19 N -0.361 5.361 20 C 0.377 3.623 21 O -0.418 6.418 22 C -0.239 4.239 23 C -0.184 4.184 24 C -0.110 4.110 25 O -0.069 6.069 26 C -0.045 4.045 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.244 0.756 41 H 0.177 0.823 42 H 0.225 0.775 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.109 -14.894 -12.703 19.821 hybrid contribution -0.566 0.048 1.009 1.159 sum -3.676 -14.846 -11.694 19.252 Atomic orbital electron populations 1.22184 0.95526 1.01862 1.02553 1.21202 0.94116 0.94850 0.87681 1.22106 1.02061 0.94715 1.02304 1.47978 1.52916 1.21473 1.08572 1.19667 0.97265 0.94325 0.79278 1.21304 1.06427 1.25010 1.03462 0.90447 1.24834 0.95801 0.94803 0.97497 1.69887 1.31496 1.29324 1.22766 0.86911 0.83338 0.77974 0.81830 1.19991 1.21116 1.19116 1.20193 0.78680 0.81753 0.89964 1.90643 1.53853 1.58372 1.39119 1.20931 1.00489 0.80502 0.96584 0.87421 1.22058 0.96146 1.01290 1.01863 1.45675 1.70512 1.06920 1.12958 1.17229 0.76695 0.84843 0.83560 1.90772 1.47809 1.74063 1.29149 1.21510 1.12915 0.94326 0.95106 1.22782 1.04749 0.90702 1.00147 1.23948 1.05246 1.00311 0.81490 1.83805 1.68248 1.27698 1.27189 1.24597 0.99545 0.80609 0.99768 0.91672 0.91734 0.92878 0.90026 0.92023 0.93010 0.90185 0.94968 0.94584 0.92576 0.91447 0.91274 0.90561 0.75602 0.82284 0.77512 0.76960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.26 37.16 0.34 -1.91 16 2 C 0.13 1.98 2.99 -67.93 -0.20 1.77 16 3 C -0.15 -2.50 8.35 37.16 0.31 -2.19 16 4 N -0.58 -11.34 2.38 -167.47 -0.40 -11.74 16 5 C 0.21 5.00 3.55 -5.20 -0.02 4.98 16 6 C -0.52 -14.17 8.40 -34.44 -0.29 -14.46 16 7 H 0.08 2.29 7.77 -52.49 -0.41 1.88 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 10 Si 0.87 20.99 27.47 -169.99 -4.67 16.32 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 14 C 0.51 9.85 6.88 -10.98 -0.08 9.77 16 15 O -0.54 -12.16 15.55 5.55 0.09 -12.07 16 16 C 0.12 1.92 2.13 -69.08 -0.15 1.77 16 17 H 0.11 1.63 5.68 -51.93 -0.30 1.34 16 18 C -0.16 -2.26 9.36 37.15 0.35 -1.91 16 19 N -0.71 -10.04 5.04 -56.02 -0.28 -10.32 16 20 C 0.59 8.49 7.78 -12.54 -0.10 8.39 16 21 O -0.54 -9.25 16.65 5.26 0.09 -9.17 16 22 C -0.23 -2.78 6.31 -103.28 -0.65 -3.43 16 23 C -0.16 -1.67 11.01 -37.45 -0.41 -2.08 16 24 C -0.04 -0.35 12.03 29.30 0.35 0.01 16 25 O -0.17 -1.62 10.52 7.64 0.08 -1.54 16 26 C 0.03 0.24 11.61 30.07 0.35 0.59 16 27 H 0.06 0.97 6.89 -51.93 -0.36 0.61 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.13 4.99 -51.93 -0.26 0.87 16 31 H 0.06 1.08 7.97 -51.93 -0.41 0.67 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.51 6.94 -51.93 -0.36 1.15 16 34 H 0.03 0.72 5.76 -51.93 -0.30 0.43 16 35 H 0.04 0.91 6.79 -51.93 -0.35 0.55 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.07 7.74 -51.93 -0.40 0.67 16 40 H 0.41 5.37 6.75 -40.82 -0.28 5.10 16 41 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 42 H 0.21 0.77 8.06 -52.49 -0.42 0.34 16 43 H 0.21 1.44 7.47 -52.48 -0.39 1.05 16 LS Contribution 357.35 15.07 5.39 5.39 Total: -1.00 -34.24 357.35 -5.17 -39.41 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.94 Total: 6.45 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -0.29 Total: 3.27 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.09 Total: -48.06 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: 0.25 Total: -22.77 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.24 -5.17 -39.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522963025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.212 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds