Wall clock time and date at job start Tue Mar 31 2020 09:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46814 * 2 1 4 4 C 1.53001 * 109.46677 * 240.00332 * 2 1 3 5 5 C 1.53006 * 109.46975 * 174.99656 * 4 2 1 6 6 F 1.39897 * 109.46857 * 60.00152 * 5 4 2 7 7 F 1.39892 * 109.47132 * 179.97438 * 5 4 2 8 8 F 1.39900 * 109.47224 * 300.00186 * 5 4 2 9 9 N 1.46497 * 109.47070 * 120.00452 * 2 1 3 10 10 C 1.34775 * 119.99972 * 274.99395 * 9 2 1 11 11 O 1.21582 * 120.00135 * 354.90159 * 10 9 2 12 12 N 1.34778 * 119.99927 * 174.89777 * 10 9 2 13 13 C 1.46924 * 120.62939 * 4.74781 * 12 10 9 14 14 C 1.52762 * 109.01052 * 233.58280 * 13 12 10 15 15 C 1.53044 * 109.38420 * 305.59362 * 14 13 12 16 16 C 1.50696 * 109.44715 * 181.25156 * 15 14 13 17 17 H 1.07994 * 120.00043 * 245.37128 * 16 15 14 18 18 C 1.37880 * 119.99997 * 65.37831 * 16 15 14 19 19 N 1.31516 * 119.99979 * 355.13892 * 18 16 15 20 20 Si 1.86800 * 119.99950 * 175.13888 * 18 16 15 21 21 H 1.48503 * 109.47192 * 94.99704 * 20 18 16 22 22 H 1.48498 * 109.46975 * 214.99946 * 20 18 16 23 23 H 1.48500 * 109.47063 * 335.00140 * 20 18 16 24 24 C 1.53040 * 109.53929 * 61.23576 * 15 14 13 25 25 C 1.46919 * 120.62831 * 185.03066 * 12 10 9 26 26 H 1.09002 * 109.46814 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46724 * 299.99212 * 1 2 3 28 28 H 1.08999 * 109.47493 * 59.99923 * 1 2 3 29 29 H 1.09004 * 109.47050 * 54.99997 * 4 2 1 30 30 H 1.09001 * 109.47450 * 294.99640 * 4 2 1 31 31 H 0.96996 * 119.99641 * 95.00224 * 9 2 1 32 32 H 1.09001 * 109.58656 * 353.42136 * 13 12 10 33 33 H 1.09003 * 109.58498 * 113.84093 * 13 12 10 34 34 H 1.08993 * 109.56495 * 185.55437 * 14 13 12 35 35 H 1.09004 * 109.38307 * 65.51823 * 14 13 12 36 36 H 1.09007 * 109.45316 * 301.21799 * 15 14 13 37 37 H 0.97004 * 119.99538 * 180.02562 * 19 18 16 38 38 H 1.09000 * 109.49839 * 178.68541 * 24 15 14 39 39 H 1.08994 * 109.52027 * 58.60210 * 24 15 14 40 40 H 1.09005 * 109.58581 * 246.15414 * 25 12 10 41 41 H 1.08997 * 109.59271 * 6.43876 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3139 6 9 4.1227 -1.2030 -0.1746 7 9 4.0311 -1.2731 -2.4559 8 9 3.9349 0.7348 -1.3698 9 7 2.0183 -0.6907 1.1961 10 6 2.1472 -0.0184 2.3571 11 8 1.9474 1.1804 2.3908 12 7 2.4974 -0.6751 3.4807 13 6 2.8428 -2.1024 3.4368 14 6 1.9857 -2.8534 4.4541 15 6 2.1509 -2.2085 5.8321 16 6 1.3299 -2.9670 6.8428 17 1 0.4918 -2.4878 7.3268 18 6 1.6487 -4.2728 7.1497 19 7 2.6080 -4.8873 6.4925 20 14 0.7182 -5.1692 8.4988 21 1 -0.3904 -5.9539 7.8983 22 1 1.6430 -6.0855 9.2132 23 1 0.1623 -4.1807 9.4575 24 6 1.6759 -0.7547 5.7771 25 6 2.5350 0.0214 4.7738 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.6052 -0.2616 -2.1370 30 1 1.7516 -1.7715 -1.2057 31 1 2.2490 -1.6318 1.1524 32 1 2.6499 -2.4945 2.4382 33 1 3.8964 -2.2312 3.6849 34 1 2.3023 -3.8954 4.4998 35 1 0.9394 -2.8039 4.1523 36 1 3.2012 -2.2366 6.1226 37 1 2.8320 -5.8062 6.7082 38 1 1.7720 -0.3029 6.7644 39 1 0.6327 -0.7240 5.4630 40 1 3.5630 0.0694 5.1333 41 1 2.1414 1.0311 4.6567 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545212085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:56 Heat of formation + Delta-G solvation = -193.070038 kcal Electronic energy + Delta-G solvation = -26972.603022 eV Core-core repulsion = 22665.110073 eV Total energy + Delta-G solvation = -4307.492949 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.24678 -47.76948 -47.69090 -40.07728 -37.39200 -35.99202 -33.54906 -32.20580 -30.73303 -30.01077 -29.12359 -26.13729 -24.12168 -23.10384 -22.42215 -21.51972 -20.22677 -19.04474 -18.65534 -18.50304 -17.85989 -17.33646 -16.30305 -16.27464 -15.09293 -14.79386 -14.63606 -14.55825 -14.45469 -14.13532 -13.93951 -13.85908 -13.83722 -13.43175 -13.29015 -13.13540 -12.87705 -12.69111 -12.59039 -12.42333 -12.27882 -11.66616 -11.54521 -11.36278 -11.23376 -10.96168 -10.64796 -10.37820 -10.19014 -9.76839 -9.54632 -9.17693 -9.03944 -8.93550 -8.39900 -7.90405 -6.05108 -4.10070 2.56204 2.90595 3.26796 3.34666 3.38606 3.51258 3.60699 3.72498 3.84024 4.19988 4.40179 4.51220 4.74051 4.95824 5.11392 5.23355 5.25022 5.44972 5.58594 5.70633 5.83568 5.95591 6.06312 6.08825 6.18375 6.28107 6.47846 6.59057 6.66631 6.84921 6.98552 7.11943 7.21088 7.42928 7.65423 7.90562 8.00156 8.28655 8.39510 8.92352 8.94094 9.55046 11.01245 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.022597 B = 0.003497 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.799195 B = 8004.252679 C = 8418.565325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.158 3.842 3 H 0.101 0.899 4 C -0.176 4.176 5 C 0.451 3.549 6 F -0.176 7.176 7 F -0.188 7.188 8 F -0.182 7.182 9 N -0.749 5.749 10 C 0.710 3.290 11 O -0.604 6.604 12 N -0.616 5.616 13 C 0.111 3.889 14 C -0.121 4.121 15 C 0.049 3.951 16 C -0.512 4.512 17 H 0.055 0.945 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.124 4.124 25 C 0.130 3.870 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.398 0.602 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.038 0.962 36 H 0.030 0.970 37 H 0.260 0.740 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.404 6.050 -17.088 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.052 3.948 3 H 0.119 0.881 4 C -0.215 4.215 5 C 0.397 3.603 6 F -0.158 7.158 7 F -0.169 7.169 8 F -0.163 7.163 9 N -0.409 5.409 10 C 0.412 3.588 11 O -0.484 6.484 12 N -0.352 5.352 13 C -0.011 4.011 14 C -0.160 4.160 15 C 0.030 3.970 16 C -0.550 4.550 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.717 3.283 21 H -0.209 1.209 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.162 4.162 25 C 0.007 3.993 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.236 0.764 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.414 6.744 -17.041 18.332 hybrid contribution -0.091 -1.240 0.631 1.394 sum -0.506 5.504 -16.410 17.316 Atomic orbital electron populations 1.22162 0.93852 1.02704 1.03166 1.20664 0.95101 0.97552 0.81492 0.88085 1.23302 0.88782 1.06606 1.02835 1.20541 0.92433 0.73784 0.73516 1.93214 1.87626 1.83917 1.51013 1.93186 1.90896 1.81191 1.51659 1.93198 1.93294 1.33771 1.96059 1.45422 1.72640 1.13996 1.08876 1.15760 0.77818 0.84856 0.80365 1.90848 1.59539 1.12787 1.85178 1.47387 1.70419 1.11002 1.06405 1.21796 1.00222 0.79615 0.99501 1.21933 0.96901 1.01943 0.95205 1.18633 0.97047 0.88921 0.92358 1.21204 1.14196 0.97215 1.22425 0.92714 1.24960 0.95189 0.97484 0.96270 1.69870 1.30527 1.12091 1.40530 0.86624 0.79626 0.79643 0.82378 1.20871 1.21205 1.19895 1.22027 0.98564 0.98774 0.96831 1.21579 1.00057 0.96102 0.81550 0.92029 0.91004 0.91496 0.85759 0.86640 0.76365 0.92618 0.91950 0.88336 0.94290 0.95208 0.93019 0.92068 0.93071 0.92460 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.48 37.16 0.35 -1.15 16 2 C 0.16 1.66 2.56 -67.93 -0.17 1.49 16 3 H 0.10 1.25 7.03 -51.93 -0.37 0.89 16 4 C -0.18 -1.28 4.88 -26.73 -0.13 -1.41 16 5 C 0.45 4.54 3.16 37.16 0.12 4.66 16 6 F -0.18 -2.15 15.18 2.25 0.03 -2.12 16 7 F -0.19 -1.88 17.32 2.25 0.04 -1.84 16 8 F -0.18 -2.11 16.71 2.25 0.04 -2.08 16 9 N -0.75 -10.07 3.72 -58.68 -0.22 -10.29 16 10 C 0.71 12.52 8.26 -86.92 -0.72 11.80 16 11 O -0.60 -12.28 15.41 5.29 0.08 -12.20 16 12 N -0.62 -11.17 2.98 -178.76 -0.53 -11.70 16 13 C 0.11 1.97 6.40 -3.93 -0.03 1.94 16 14 C -0.12 -2.60 5.18 -26.83 -0.14 -2.74 16 15 C 0.05 1.15 2.01 -91.73 -0.18 0.97 16 16 C -0.51 -13.51 8.49 -34.44 -0.29 -13.80 16 17 H 0.05 1.45 7.75 -52.49 -0.41 1.04 16 18 C 0.06 1.65 5.36 -17.82 -0.10 1.56 16 19 N -0.89 -24.25 11.53 55.43 0.64 -23.61 16 20 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 25 C 0.13 2.41 6.42 -3.71 -0.02 2.38 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.40 4.86 5.32 -40.82 -0.22 4.64 16 32 H 0.06 0.83 5.57 -51.93 -0.29 0.54 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.10 2.36 6.30 -51.93 -0.33 2.03 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.08 1.46 7.03 -51.93 -0.37 1.09 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -30.17 338.08 -7.06 -37.23 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.76 Total: 2.83 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -1.45 Total: 3.03 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.11 Total: -45.60 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.20 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.11 Total: -6.04 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.17 -7.06 -37.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545212085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.840 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds