Wall clock time and date at job start Tue Mar 31 2020 09:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47192 * 2 1 4 4 C 1.53009 * 109.47060 * 119.99389 * 2 1 3 5 5 C 1.52996 * 109.46922 * 185.00407 * 4 2 1 6 6 F 1.39893 * 109.47606 * 60.00421 * 5 4 2 7 7 F 1.39901 * 109.47047 * 299.99897 * 5 4 2 8 8 F 1.39905 * 109.46871 * 180.02562 * 5 4 2 9 9 N 1.46496 * 109.47661 * 239.99883 * 2 1 3 10 10 C 1.34774 * 119.99910 * 84.99529 * 9 2 1 11 11 O 1.21589 * 120.00257 * 355.03496 * 10 9 2 12 12 N 1.34782 * 119.99535 * 175.02872 * 10 9 2 13 13 C 1.46931 * 120.62542 * 184.95204 * 12 10 9 14 14 C 1.52763 * 109.00654 * 233.58424 * 13 12 10 15 15 C 1.53043 * 109.38407 * 305.59177 * 14 13 12 16 16 C 1.50694 * 109.44814 * 181.25542 * 15 14 13 17 17 H 1.08005 * 119.99899 * 239.93557 * 16 15 14 18 18 C 1.37877 * 120.00314 * 59.93597 * 16 15 14 19 19 N 1.31510 * 119.99916 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99983 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47498 * 90.00314 * 20 18 16 22 22 H 1.48502 * 109.47003 * 209.99823 * 20 18 16 23 23 H 1.48504 * 109.47284 * 329.99639 * 20 18 16 24 24 C 1.53041 * 109.53684 * 61.23873 * 15 14 13 25 25 C 1.46922 * 120.63592 * 5.23436 * 12 10 9 26 26 H 1.08992 * 109.46981 * 60.00382 * 1 2 3 27 27 H 1.09000 * 109.46726 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47501 * 300.00041 * 1 2 3 29 29 H 1.09003 * 109.46558 * 65.00602 * 4 2 1 30 30 H 1.08997 * 109.47108 * 305.00223 * 4 2 1 31 31 H 0.97005 * 120.00162 * 264.99763 * 9 2 1 32 32 H 1.09001 * 109.58827 * 353.41984 * 13 12 10 33 33 H 1.09005 * 109.58547 * 113.84374 * 13 12 10 34 34 H 1.09001 * 109.56248 * 185.55052 * 14 13 12 35 35 H 1.08999 * 109.38371 * 65.51888 * 14 13 12 36 36 H 1.09001 * 109.45518 * 301.21459 * 15 14 13 37 37 H 0.97003 * 120.00218 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.49033 * 178.68459 * 24 15 14 39 39 H 1.08993 * 109.52236 * 58.60766 * 24 15 14 40 40 H 1.08994 * 109.58633 * 246.15906 * 25 12 10 41 41 H 1.09003 * 109.58160 * 6.43667 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5648 -0.6131 1.3138 6 9 3.9349 0.7348 1.3699 7 9 4.1226 -1.2030 0.1745 8 9 4.0311 -1.2730 2.4559 9 7 2.0184 -0.6906 -1.1961 10 6 2.1471 -0.0183 -2.3570 11 8 1.7735 1.1361 -2.4357 12 7 2.6901 -0.6256 -3.4308 13 6 2.9366 0.1244 -4.6700 14 6 2.2736 -0.6081 -5.8351 15 6 2.7641 -2.0574 -5.8690 16 6 2.1347 -2.7729 -7.0363 17 1 1.5168 -3.6425 -6.8672 18 6 2.3476 -2.3177 -8.3202 19 7 3.1004 -1.2592 -8.5262 20 14 1.5667 -3.2043 -9.7671 21 1 0.2318 -2.6166 -10.0460 22 1 2.4327 -3.0560 -10.9644 23 1 1.4151 -4.6452 -9.4414 24 6 2.3718 -2.7610 -4.5678 25 6 3.0410 -2.0516 -3.3865 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.7517 -1.7715 1.2057 30 1 1.6054 -0.2616 2.1370 31 1 2.2492 -1.6318 -1.1525 32 1 2.5140 1.1253 -4.5815 33 1 4.0097 0.1931 -4.8482 34 1 2.5328 -0.1142 -6.7716 35 1 1.1917 -0.5931 -5.7033 36 1 3.8487 -2.0712 -5.9766 37 1 3.2499 -0.9387 -9.4294 38 1 2.7009 -3.7996 -4.6024 39 1 1.2891 -2.7264 -4.4471 40 1 4.1228 -2.1641 -3.4579 41 1 2.6896 -2.4854 -2.4503 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545212086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:00 Heat of formation + Delta-G solvation = -191.865573 kcal Electronic energy + Delta-G solvation = -26933.741227 eV Core-core repulsion = 22626.300508 eV Total energy + Delta-G solvation = -4307.440719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.28643 -47.80848 -47.73197 -40.07591 -37.40111 -35.99037 -33.60095 -32.06588 -30.90873 -29.94290 -29.09331 -26.12852 -24.14187 -23.10134 -22.47530 -21.48558 -20.24497 -19.06092 -18.69500 -18.53292 -17.87312 -17.35591 -16.43238 -16.15254 -15.03237 -14.78757 -14.66846 -14.58501 -14.48491 -14.17626 -13.95126 -13.89237 -13.87337 -13.50887 -13.28468 -13.08616 -12.90549 -12.73462 -12.61772 -12.44234 -12.14486 -11.80340 -11.68126 -11.29127 -11.10830 -10.92616 -10.65325 -10.41675 -10.04964 -9.77115 -9.54670 -9.18045 -9.07457 -8.88941 -8.35823 -7.88723 -6.00784 -4.07589 2.52091 2.89385 3.29330 3.36534 3.38776 3.50624 3.57150 3.69029 3.79987 4.17934 4.41895 4.47861 4.69088 4.92528 5.09166 5.19415 5.28942 5.35449 5.49509 5.69790 5.78839 5.87922 6.06322 6.08314 6.28070 6.44239 6.49898 6.57978 6.63531 6.81480 6.99263 7.13560 7.25521 7.49195 7.72140 7.94706 8.07481 8.29332 8.41480 8.93341 8.95704 9.57443 11.04582 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.028219 B = 0.003271 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.993121 B = 8556.782467 C = 8743.880369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.160 3.840 3 H 0.099 0.901 4 C -0.176 4.176 5 C 0.451 3.549 6 F -0.181 7.181 7 F -0.176 7.176 8 F -0.188 7.188 9 N -0.751 5.751 10 C 0.709 3.291 11 O -0.599 6.599 12 N -0.616 5.616 13 C 0.127 3.873 14 C -0.123 4.123 15 C 0.049 3.951 16 C -0.514 4.514 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.123 4.123 25 C 0.114 3.886 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.396 0.604 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.037 0.963 36 H 0.027 0.973 37 H 0.261 0.739 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.311 -0.140 20.977 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.054 3.946 3 H 0.117 0.883 4 C -0.215 4.215 5 C 0.397 3.603 6 F -0.163 7.163 7 F -0.158 7.158 8 F -0.169 7.169 9 N -0.411 5.411 10 C 0.410 3.590 11 O -0.478 6.478 12 N -0.352 5.352 13 C 0.005 3.995 14 C -0.162 4.162 15 C 0.031 3.969 16 C -0.552 4.552 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.162 4.162 25 C -0.009 4.009 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.133 0.867 30 H 0.143 0.857 31 H 0.234 0.766 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.437 0.825 20.750 20.816 hybrid contribution -0.040 -1.048 -0.771 1.302 sum -1.477 -0.223 19.978 20.034 Atomic orbital electron populations 1.22157 0.93843 1.02561 1.03339 1.20652 0.95209 0.97348 0.81432 0.88266 1.23305 0.88775 1.06535 1.02886 1.20546 0.92424 0.73812 0.73506 1.93199 1.93286 1.33753 1.96053 1.93212 1.87635 1.83923 1.51012 1.93189 1.90900 1.81196 1.51664 1.45435 1.72887 1.13857 1.08921 1.15791 0.78495 0.84490 0.80188 1.90864 1.56304 1.16820 1.83793 1.47432 1.64403 1.10578 1.12751 1.21689 0.99780 0.95568 0.82501 1.21944 0.98050 0.99029 0.97170 1.18623 0.96623 0.91381 0.90290 1.21182 1.30576 1.12491 0.90945 0.92786 1.24959 0.95096 0.95053 0.98829 1.69844 1.38213 1.23605 1.21183 0.86624 0.79215 0.80084 0.82233 1.20754 1.21257 1.20007 1.22009 0.99517 0.98779 0.95862 1.21697 0.99822 0.80597 0.98766 0.90719 0.92198 0.91573 0.86704 0.85744 0.76627 0.90529 0.92568 0.87849 0.94402 0.95460 0.92951 0.92177 0.92937 0.91898 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.10 16 2 C 0.16 1.62 2.48 -67.93 -0.17 1.45 16 3 H 0.10 1.21 7.18 -51.93 -0.37 0.83 16 4 C -0.18 -1.17 4.88 -26.73 -0.13 -1.30 16 5 C 0.45 4.28 3.16 37.16 0.12 4.40 16 6 F -0.18 -2.04 16.71 2.25 0.04 -2.01 16 7 F -0.18 -2.02 15.18 2.25 0.03 -1.98 16 8 F -0.19 -1.77 17.32 2.25 0.04 -1.73 16 9 N -0.75 -9.65 3.72 -58.67 -0.22 -9.87 16 10 C 0.71 12.49 8.26 -86.92 -0.72 11.78 16 11 O -0.60 -12.46 15.43 5.29 0.08 -12.38 16 12 N -0.62 -11.21 2.98 -178.76 -0.53 -11.75 16 13 C 0.13 2.58 6.41 -3.93 -0.03 2.55 16 14 C -0.12 -2.87 5.14 -26.83 -0.14 -3.00 16 15 C 0.05 1.17 2.07 -91.73 -0.19 0.98 16 16 C -0.51 -13.65 8.56 -34.44 -0.29 -13.95 16 17 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -24.78 11.31 55.43 0.63 -24.15 16 20 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.12 -2.37 5.30 -26.61 -0.14 -2.51 16 25 C 0.11 1.84 6.39 -3.72 -0.02 1.82 16 26 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.40 4.39 5.35 -40.82 -0.22 4.17 16 32 H 0.08 1.60 6.99 -51.93 -0.36 1.24 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.10 2.68 6.03 -51.93 -0.31 2.37 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.74 5.64 -51.93 -0.29 0.45 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -30.83 337.68 -7.07 -37.90 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.75 Total: 2.28 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -1.45 Total: 2.68 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: -0.12 Total: -45.76 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.08 Total: -12.38 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.11 Total: -5.72 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.83 -7.07 -37.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545212086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.967 kcal (2) G-P(sol) polarization free energy of solvation -30.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds