Wall clock time and date at job start Tue Mar 31 2020 09:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35906 * 116.99856 * 2 1 4 4 C 1.38759 * 120.05558 * 359.97438 * 3 2 1 5 5 C 1.38111 * 119.94366 * 180.02562 * 4 3 2 6 6 N 1.48002 * 119.97283 * 180.02562 * 5 4 3 7 7 O 1.21800 * 120.00317 * 0.02562 * 6 5 4 8 8 O 1.21806 * 119.99844 * 180.02562 * 6 5 4 9 9 C 1.38294 * 120.05507 * 0.02562 * 5 4 3 10 10 C 1.38234 * 120.11205 * 359.72199 * 9 5 4 11 11 C 1.38166 * 120.05640 * 0.55074 * 10 9 5 12 12 C 1.50699 * 120.03477 * 179.72360 * 11 10 9 13 13 H 1.08998 * 109.47629 * 219.73183 * 12 11 10 14 14 C 1.52997 * 109.47156 * 99.72528 * 12 11 10 15 15 N 1.46904 * 109.46851 * 339.72977 * 12 11 10 16 16 C 1.46899 * 111.00029 * 204.99994 * 15 12 11 17 17 C 1.52997 * 109.47254 * 179.97438 * 16 15 12 18 18 C 1.52992 * 109.47482 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.47592 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00057 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00356 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99989 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00117 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47306 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47019 * 120.00329 * 23 21 19 26 26 H 1.48498 * 109.47326 * 240.00104 * 23 21 19 27 27 H 1.09001 * 109.47055 * 59.99952 * 1 2 3 28 28 H 1.08992 * 109.46954 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47035 * 300.00536 * 1 2 3 30 30 H 1.08003 * 120.02611 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.94320 * 180.02562 * 9 5 4 32 32 H 1.08006 * 119.97553 * 180.27864 * 10 9 5 33 33 H 1.09007 * 109.47280 * 300.00182 * 14 12 11 34 34 H 1.08997 * 109.47489 * 60.00240 * 14 12 11 35 35 H 1.09007 * 109.47004 * 180.02562 * 14 12 11 36 36 H 1.00908 * 110.99583 * 328.94906 * 15 12 11 37 37 H 1.09002 * 109.47043 * 299.99792 * 16 15 12 38 38 H 1.09001 * 109.47354 * 59.99854 * 16 15 12 39 39 H 1.09002 * 109.47153 * 300.00004 * 17 16 15 40 40 H 1.08998 * 109.47533 * 59.99633 * 17 16 15 41 41 H 1.09002 * 109.47103 * 300.00247 * 18 17 16 42 42 H 1.09001 * 109.47066 * 60.00169 * 18 17 16 43 43 H 0.96996 * 119.99885 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2914 2.3754 -0.0005 5 6 1.9208 3.6048 -0.0011 6 7 1.1165 4.8472 -0.0011 7 8 -0.0999 4.7853 -0.0001 8 8 1.6711 5.9317 -0.0020 9 6 3.3019 3.6758 -0.0016 10 6 4.0559 2.5172 0.0042 11 6 3.4312 1.2849 -0.0010 12 6 4.2537 0.0222 -0.0009 13 1 3.7923 -0.7121 -0.6612 14 6 4.3227 -0.5415 1.4198 15 7 5.6113 0.3222 -0.4751 16 6 6.2451 -0.8729 -1.0478 17 6 7.6539 -0.5217 -1.5301 18 6 8.3142 -1.7665 -2.1259 19 6 9.7016 -1.4205 -2.6016 20 1 10.0753 -0.4133 -2.4897 21 6 10.4944 -2.3897 -3.1786 22 7 10.0397 -3.6163 -3.3145 23 14 12.2140 -1.9605 -3.7689 24 1 12.4844 -0.5246 -3.5035 25 1 13.2080 -2.7930 -3.0449 26 1 12.3168 -2.2227 -5.2269 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2128 2.3204 -0.0005 31 1 3.7922 4.6381 -0.0016 32 1 5.1344 2.5753 0.0083 33 1 4.7843 0.1929 2.0800 34 1 3.3155 -0.7641 1.7717 35 1 4.9181 -1.4546 1.4198 36 1 5.6025 1.0808 -1.1405 37 1 6.3045 -1.6521 -0.2878 38 1 5.6520 -1.2308 -1.8894 39 1 7.5941 0.2573 -2.2902 40 1 8.2473 -0.1636 -0.6888 41 1 8.3741 -2.5453 -1.3655 42 1 7.7210 -2.1250 -2.9672 43 1 10.5973 -4.2980 -3.7208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595010939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:27 Heat of formation + Delta-G solvation = -26.659405 kcal Electronic energy + Delta-G solvation = -24651.660352 eV Core-core repulsion = 20893.240250 eV Total energy + Delta-G solvation = -3758.420102 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.49155 -40.99851 -38.39375 -37.03405 -36.83597 -34.25653 -32.60777 -31.19319 -30.92467 -29.34863 -28.15824 -26.80821 -25.91148 -23.50592 -23.18611 -22.29356 -20.82455 -20.23609 -19.97243 -18.98862 -17.82125 -17.42747 -16.81496 -16.70743 -16.38112 -16.17467 -15.53008 -14.93563 -14.61151 -14.38727 -14.08215 -13.92147 -13.56041 -13.15476 -12.69838 -12.41614 -12.34731 -12.21730 -12.04474 -11.84176 -11.82376 -11.79860 -11.56178 -11.42065 -11.34046 -11.08535 -10.86288 -10.62334 -10.51036 -9.83384 -9.74300 -9.39540 -9.09446 -8.99943 -8.41616 -8.37224 -6.02580 -4.04747 -0.52755 0.56856 1.02307 1.07232 2.58548 2.84438 3.29336 3.36973 3.41124 3.83104 3.98578 4.16817 4.23024 4.38254 4.45466 4.57244 4.63120 4.68362 4.93161 5.00214 5.12086 5.18730 5.26152 5.33527 5.36847 5.56936 5.64159 5.73122 5.79601 5.82403 5.88009 6.06891 6.13559 6.26199 6.59651 6.62847 6.67092 7.06805 7.15852 7.34830 7.40631 7.64912 7.78760 7.97525 8.40397 9.02688 9.59592 11.08885 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.002413 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.201838 B =11601.272418 C =12548.677979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.299 6.299 3 C 0.136 3.864 4 C -0.152 4.152 5 C -0.013 4.013 6 N 0.030 4.970 7 O -0.166 6.166 8 O -0.155 6.155 9 C -0.085 4.085 10 C -0.072 4.072 11 C -0.058 4.058 12 C 0.123 3.877 13 H 0.066 0.934 14 C -0.132 4.132 15 N -0.687 5.687 16 C 0.059 3.941 17 C -0.107 4.107 18 C 0.022 3.978 19 C -0.518 4.518 20 H 0.056 0.944 21 C 0.055 3.945 22 N -0.896 5.896 23 Si 0.892 3.108 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.060 0.940 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.168 0.832 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.338 0.662 37 H 0.071 0.929 38 H 0.027 0.973 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.016 0.984 42 H 0.013 0.987 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.809 10.114 8.901 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.211 6.211 3 C 0.089 3.911 4 C -0.172 4.172 5 C -0.096 4.096 6 N 0.549 4.451 7 O -0.381 6.381 8 O -0.372 6.372 9 C -0.104 4.104 10 C -0.090 4.090 11 C -0.060 4.060 12 C 0.014 3.986 13 H 0.084 0.916 14 C -0.190 4.190 15 N -0.319 5.319 16 C -0.069 4.069 17 C -0.145 4.145 18 C -0.016 4.016 19 C -0.557 4.557 20 H 0.074 0.926 21 C -0.146 4.146 22 N -0.536 5.536 23 Si 0.720 3.280 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.079 0.921 28 H 0.127 0.873 29 H 0.079 0.921 30 H 0.174 0.826 31 H 0.174 0.826 32 H 0.185 0.815 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.157 0.843 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.032 0.968 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.027 9.038 9.455 23.919 hybrid contribution -0.101 0.516 -1.257 1.362 sum -20.128 9.554 8.198 23.741 Atomic orbital electron populations 1.23243 0.77477 1.04973 1.01814 1.86201 1.21997 1.24858 1.88057 1.18517 0.91363 0.84154 0.97051 1.20929 1.02129 0.89797 1.04346 1.20782 0.91602 0.83837 1.13390 1.43616 1.01338 1.02736 0.97430 1.94527 0.95866 1.94055 1.53642 1.94551 1.74201 1.15423 1.53047 1.21060 0.90286 1.01507 0.97567 1.21113 1.01966 0.89045 0.96920 1.19996 0.90533 0.97110 0.98339 1.20412 0.88102 0.91611 0.98507 0.91644 1.21735 1.01495 1.01563 0.94193 1.60819 1.16711 1.10176 1.44215 1.22210 0.96384 0.91207 0.97145 1.21626 0.92620 1.00664 0.99567 1.19065 0.94994 0.91870 0.95659 1.21282 0.99453 0.95951 1.38998 0.92608 1.25036 0.98430 0.95049 0.96046 1.69974 1.36969 1.01896 1.44746 0.86542 0.84564 0.78539 0.78397 1.19710 1.21002 1.21047 0.92143 0.87283 0.92117 0.82567 0.82563 0.81463 0.91875 0.92415 0.91457 0.84262 0.91088 0.95464 0.93629 0.92413 0.96542 0.96827 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.30 -2.57 9.64 -19.45 -0.19 -2.76 16 3 C 0.14 1.26 6.66 -39.22 -0.26 1.00 16 4 C -0.15 -1.37 8.54 -39.44 -0.34 -1.70 16 5 C -0.01 -0.13 6.85 -79.98 -0.55 -0.68 16 6 N 0.03 0.35 4.45 33.95 0.15 0.51 16 7 O -0.17 -2.06 18.45 -29.46 -0.54 -2.61 16 8 O -0.16 -1.95 18.45 -29.46 -0.54 -2.49 16 9 C -0.08 -0.75 9.55 -39.56 -0.38 -1.13 16 10 C -0.07 -0.62 8.87 -39.61 -0.35 -0.98 16 11 C -0.06 -0.57 5.00 -104.48 -0.52 -1.09 16 12 C 0.12 1.35 2.49 -68.86 -0.17 1.18 16 13 H 0.07 0.78 7.51 -51.93 -0.39 0.39 16 14 C -0.13 -1.38 9.39 37.16 0.35 -1.03 16 15 N -0.69 -8.59 5.61 -107.95 -0.61 -9.20 16 16 C 0.06 0.93 5.48 -3.83 -0.02 0.91 16 17 C -0.11 -2.08 5.41 -26.74 -0.14 -2.23 16 18 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 19 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 20 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 21 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 23 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 28 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 30 H 0.16 1.16 5.85 -52.48 -0.31 0.86 16 31 H 0.16 1.16 7.61 -52.48 -0.40 0.77 16 32 H 0.17 1.31 6.72 -52.48 -0.35 0.96 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.54 8.05 -51.93 -0.42 0.13 16 35 H 0.07 0.75 7.45 -51.92 -0.39 0.36 16 36 H 0.34 3.89 6.99 -39.29 -0.27 3.61 16 37 H 0.07 1.15 7.44 -51.93 -0.39 0.76 16 38 H 0.03 0.44 8.06 -51.93 -0.42 0.02 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -31.38 364.24 -8.67 -40.05 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -6.21 Total: -1.85 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -1.94 Total: -17.60 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.28 Total: -34.71 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -1.27 Total: -7.86 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.38 -8.67 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595010939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.394 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds