Wall clock time and date at job start Tue Mar 31 2020 09:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47141 * 2 1 4 4 C 1.52999 * 109.47127 * 239.99500 * 2 1 3 5 5 C 1.53001 * 109.46731 * 175.00107 * 4 2 1 6 6 F 1.39903 * 109.47289 * 60.00301 * 5 4 2 7 7 F 1.39902 * 109.46924 * 180.02562 * 5 4 2 8 8 F 1.39902 * 109.47205 * 300.00085 * 5 4 2 9 9 N 1.46497 * 109.46670 * 119.99316 * 2 1 3 10 10 C 1.34772 * 120.00564 * 275.00085 * 9 2 1 11 11 O 1.21586 * 119.99857 * 5.06523 * 10 9 2 12 12 N 1.34775 * 120.00488 * 185.06768 * 10 9 2 13 13 C 1.46927 * 120.62846 * 354.93473 * 12 10 9 14 14 C 1.53184 * 108.77628 * 126.41941 * 13 12 10 15 15 C 1.53043 * 109.31701 * 54.63372 * 14 13 12 16 16 C 1.53042 * 109.53339 * 298.63778 * 15 14 13 17 17 H 1.08996 * 109.49546 * 301.40591 * 16 15 14 18 18 C 1.50703 * 109.49195 * 181.31300 * 16 15 14 19 19 H 1.08004 * 120.00290 * 0.16499 * 18 16 15 20 20 C 1.37873 * 119.99732 * 180.15738 * 18 16 15 21 21 N 1.31519 * 120.00038 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00185 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47236 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47454 * 120.00188 * 22 20 18 25 25 H 1.48497 * 109.47477 * 240.00408 * 22 20 18 26 26 C 1.46931 * 120.63393 * 174.96176 * 12 10 9 27 27 H 1.09006 * 109.46923 * 60.00553 * 1 2 3 28 28 H 1.08993 * 109.47250 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47442 * 300.00574 * 1 2 3 30 30 H 1.08997 * 109.47228 * 294.99927 * 4 2 1 31 31 H 1.08993 * 109.46993 * 55.00264 * 4 2 1 32 32 H 0.97002 * 120.00063 * 95.00618 * 9 2 1 33 33 H 1.09006 * 109.58566 * 246.20443 * 13 12 10 34 34 H 1.08996 * 109.59076 * 6.62562 * 13 12 10 35 35 H 1.09000 * 109.49795 * 174.58954 * 14 13 12 36 36 H 1.09004 * 109.49653 * 294.67897 * 14 13 12 37 37 H 1.08998 * 109.46167 * 178.61648 * 15 14 13 38 38 H 1.08999 * 109.45454 * 58.65787 * 15 14 13 39 39 H 0.97004 * 119.99913 * 180.02562 * 21 20 18 40 40 H 1.09003 * 109.58725 * 113.79224 * 26 12 10 41 41 H 1.08995 * 109.69916 * 353.44059 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6134 -1.3135 6 9 4.1227 -1.2031 -0.1741 7 9 4.0312 -1.2725 -2.4561 8 9 3.9349 0.7346 -1.3696 9 7 2.0182 -0.6905 1.1963 10 6 2.1469 -0.0181 2.3572 11 8 1.7718 1.1357 2.4362 12 7 2.6914 -0.6247 3.4305 13 6 3.0475 -2.0494 3.3847 14 6 4.5142 -2.2046 3.7988 15 6 4.7269 -1.5471 5.1643 16 6 4.4074 -0.0535 5.0685 17 1 5.0482 0.4081 4.3173 18 6 4.6482 0.5990 6.4055 19 1 4.9970 0.0083 7.2397 20 6 4.4232 1.9500 6.5636 21 7 3.9981 2.6692 5.5479 22 14 4.7223 2.7590 8.2206 23 1 5.1953 1.7394 9.1911 24 1 5.7523 3.8188 8.0753 25 1 3.4576 3.3621 8.7125 26 6 2.9396 0.1260 4.6690 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.7517 -1.7716 -1.2054 31 1 1.6054 -0.2619 -2.1369 32 1 2.2490 -1.6316 1.1528 33 1 2.4125 -2.6071 4.0731 34 1 2.9119 -2.4276 2.3715 35 1 4.7643 -3.2636 3.8619 36 1 5.1539 -1.7227 3.0593 37 1 5.7643 -1.6776 5.4725 38 1 4.0690 -2.0130 5.8980 39 1 3.8402 3.6198 5.6591 40 1 2.2957 -0.2543 5.4621 41 1 2.7320 1.1835 4.5054 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595584089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:04 Heat of formation + Delta-G solvation = -190.167437 kcal Electronic energy + Delta-G solvation = -27422.617512 eV Core-core repulsion = 23115.250430 eV Total energy + Delta-G solvation = -4307.367083 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.13157 -47.66383 -47.56592 -39.82016 -37.28811 -35.76654 -33.44392 -32.00122 -31.16705 -29.64966 -29.01923 -25.04865 -24.64310 -23.73665 -21.85916 -21.50267 -20.10682 -18.92264 -18.53309 -18.38529 -17.74737 -17.21590 -16.22168 -16.02649 -14.86769 -14.56240 -14.54048 -14.44534 -14.14524 -14.01539 -13.84966 -13.77565 -13.71610 -13.64731 -13.32626 -13.14197 -12.76872 -12.64080 -12.49025 -12.23938 -12.08408 -11.85014 -11.54907 -11.20673 -10.96907 -10.85115 -10.45212 -10.34618 -10.19263 -9.84199 -9.43349 -9.07079 -8.91106 -8.82511 -8.38665 -7.61261 -5.95048 -4.03899 2.66455 3.11578 3.33442 3.41324 3.44309 3.69632 3.80025 3.88652 3.94394 4.37952 4.48517 4.62630 4.81939 5.04535 5.21739 5.29993 5.33162 5.35260 5.54522 5.59338 5.65125 5.88097 6.01753 6.17665 6.20890 6.35689 6.62371 6.70246 6.76053 6.84672 7.02694 7.09164 7.37569 7.52230 7.78053 7.97149 8.10163 8.44878 8.60017 8.99932 9.26690 9.61594 11.10082 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.019082 B = 0.004159 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.963948 B = 6730.332173 C = 6982.805980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 H 0.100 0.900 4 C -0.175 4.175 5 C 0.451 3.549 6 F -0.175 7.175 7 F -0.190 7.190 8 F -0.180 7.180 9 N -0.755 5.755 10 C 0.704 3.296 11 O -0.582 6.582 12 N -0.620 5.620 13 C 0.117 3.883 14 C -0.133 4.133 15 C -0.109 4.109 16 C 0.039 3.961 17 H 0.028 0.972 18 C -0.520 4.520 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.879 5.879 22 Si 0.891 3.109 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.129 3.871 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.392 0.608 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.262 0.738 40 H 0.038 0.962 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 -11.048 -15.126 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.053 3.947 3 H 0.118 0.882 4 C -0.214 4.214 5 C 0.397 3.603 6 F -0.157 7.157 7 F -0.171 7.171 8 F -0.161 7.161 9 N -0.416 5.416 10 C 0.406 3.594 11 O -0.459 6.459 12 N -0.357 5.357 13 C -0.008 4.008 14 C -0.172 4.172 15 C -0.147 4.147 16 C 0.020 3.980 17 H 0.046 0.954 18 C -0.559 4.559 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.517 5.517 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.210 1.210 26 C 0.009 3.991 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.131 0.869 31 H 0.141 0.859 32 H 0.229 0.771 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.611 -9.976 -15.084 18.935 hybrid contribution 0.593 -0.095 0.757 0.966 sum -5.019 -10.071 -14.327 18.218 Atomic orbital electron populations 1.22148 0.94069 1.02209 1.03305 1.20628 0.94997 0.97597 0.81508 0.88193 1.23287 0.88849 1.06268 1.02966 1.20546 0.92396 0.73938 0.73464 1.93217 1.87622 1.83912 1.50932 1.93178 1.90943 1.81297 1.51728 1.93215 1.93252 1.33611 1.96026 1.45475 1.73415 1.13605 1.09074 1.15873 0.78889 0.84601 0.80029 1.90917 1.55379 1.16294 1.83331 1.47765 1.63778 1.09896 1.14227 1.21481 0.96599 0.83049 0.99631 1.21942 0.95648 0.99735 0.99846 1.21610 1.00311 0.98854 0.93926 1.18994 0.92270 0.89738 0.97041 0.95357 1.21115 1.45431 0.93285 0.96045 0.92350 1.25057 0.94935 0.97473 0.96576 1.69908 1.44821 1.07110 1.29831 0.86549 0.77849 0.79426 0.84254 1.19818 1.21055 1.20992 1.22177 0.98010 0.98961 0.79960 0.91691 0.92461 0.90732 0.86938 0.85902 0.77134 0.92190 0.92231 0.92419 0.92098 0.93112 0.93237 0.92740 0.94323 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 2 C 0.16 1.88 2.48 -67.93 -0.17 1.72 16 3 H 0.10 1.47 7.18 -51.93 -0.37 1.10 16 4 C -0.17 -1.41 4.88 -26.73 -0.13 -1.54 16 5 C 0.45 5.07 3.16 37.16 0.12 5.19 16 6 F -0.18 -2.34 15.18 2.25 0.03 -2.30 16 7 F -0.19 -2.04 17.32 2.25 0.04 -2.01 16 8 F -0.18 -2.46 16.71 2.25 0.04 -2.42 16 9 N -0.75 -10.89 3.72 -58.68 -0.22 -11.11 16 10 C 0.70 14.24 8.26 -86.92 -0.72 13.52 16 11 O -0.58 -14.34 15.45 5.29 0.08 -14.26 16 12 N -0.62 -12.60 2.97 -178.50 -0.53 -13.13 16 13 C 0.12 1.83 6.43 -3.71 -0.02 1.80 16 14 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 15 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 16 C 0.04 0.97 2.25 -91.65 -0.21 0.77 16 17 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 18 C -0.52 -14.25 8.56 -34.44 -0.29 -14.54 16 19 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 20 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 21 N -0.88 -26.01 11.39 55.43 0.63 -25.38 16 22 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 26 C 0.13 3.19 5.38 -3.71 -0.02 3.17 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 30 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.39 4.69 5.32 -40.82 -0.22 4.48 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.74 5.57 -51.93 -0.29 0.46 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.12 3.54 5.15 -51.93 -0.27 3.28 16 LS Contribution 337.89 15.07 5.09 5.09 Total: -1.00 -32.84 337.89 -7.10 -39.94 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.76 Total: 3.35 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -1.48 Total: 5.79 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.12 Total: -49.62 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.08 Total: -14.26 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 0.11 Total: -6.73 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.84 -7.10 -39.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595584089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.232 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds