Wall clock time and date at job start Tue Mar 31 2020 09:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47019 * 2 1 4 4 C 1.52994 * 109.47600 * 120.00743 * 2 1 3 5 5 C 1.52995 * 109.47438 * 184.99786 * 4 2 1 6 6 F 1.39910 * 109.47182 * 59.99990 * 5 4 2 7 7 F 1.39899 * 109.47373 * 179.97438 * 5 4 2 8 8 F 1.39894 * 109.47305 * 300.00190 * 5 4 2 9 9 N 1.46506 * 109.47108 * 240.00927 * 2 1 3 10 10 C 1.34770 * 120.00206 * 84.99314 * 9 2 1 11 11 O 1.21582 * 120.00317 * 5.08773 * 10 9 2 12 12 N 1.34786 * 119.99965 * 185.08064 * 10 9 2 13 13 C 1.46925 * 120.62805 * 354.95041 * 12 10 9 14 14 C 1.53187 * 108.77574 * 126.41006 * 13 12 10 15 15 C 1.53052 * 109.31149 * 54.63328 * 14 13 12 16 16 C 1.53042 * 109.53582 * 298.63425 * 15 14 13 17 17 H 1.09004 * 109.49725 * 301.41394 * 16 15 14 18 18 C 1.50699 * 109.52394 * 181.33726 * 16 15 14 19 19 H 1.08003 * 119.99724 * 0.07957 * 18 16 15 20 20 C 1.37874 * 120.00276 * 180.02562 * 18 16 15 21 21 N 1.31517 * 119.99703 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 120.00236 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46878 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46793 * 120.00070 * 22 20 18 25 25 H 1.48492 * 109.47328 * 240.00482 * 22 20 18 26 26 C 1.46922 * 120.62707 * 174.96682 * 12 10 9 27 27 H 1.08994 * 109.46767 * 299.99588 * 1 2 3 28 28 H 1.08996 * 109.47229 * 59.99520 * 1 2 3 29 29 H 1.09002 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46764 * 304.99926 * 4 2 1 31 31 H 1.08998 * 109.47275 * 64.99417 * 4 2 1 32 32 H 0.97005 * 119.99639 * 265.00299 * 9 2 1 33 33 H 1.09005 * 109.57963 * 246.19504 * 13 12 10 34 34 H 1.08991 * 109.58994 * 6.47623 * 13 12 10 35 35 H 1.09005 * 109.50040 * 174.58172 * 14 13 12 36 36 H 1.08997 * 109.50213 * 294.68325 * 14 13 12 37 37 H 1.09001 * 109.45694 * 178.61176 * 15 14 13 38 38 H 1.08993 * 109.45676 * 58.65448 * 15 14 13 39 39 H 0.96994 * 119.99812 * 179.97438 * 21 20 18 40 40 H 1.09002 * 109.58678 * 113.80746 * 26 12 10 41 41 H 1.08993 * 109.59212 * 353.37699 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.6134 1.3135 6 9 3.9351 0.7346 1.3696 7 9 4.0313 -1.2726 2.4559 8 9 4.1227 -1.2030 0.1740 9 7 2.0184 -0.6904 -1.1963 10 6 2.1469 -0.0180 -2.3572 11 8 1.9468 1.1807 -2.3908 12 7 2.4976 -0.6744 -3.4810 13 6 2.8502 -2.1000 -3.4360 14 6 1.9889 -2.8533 -4.4546 15 6 2.1540 -2.2080 -5.8326 16 6 1.6772 -0.7548 -5.7776 17 1 0.6338 -0.7258 -5.4636 18 6 1.8092 -0.1295 -7.1424 19 1 2.1935 -0.7106 -7.9677 20 6 1.4384 1.1840 -7.3378 21 7 0.9690 1.8911 -6.3331 22 14 1.6027 1.9593 -9.0293 23 1 2.1516 0.9598 -9.9807 24 1 0.2677 2.4086 -9.4996 25 1 2.5188 3.1254 -8.9525 26 6 2.5350 0.0222 -4.7740 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6055 -0.2619 2.1369 31 1 1.7517 -1.7716 1.2054 32 1 2.2490 -1.6317 -1.1529 33 1 3.9039 -2.2238 -3.6859 34 1 2.6634 -2.4913 -2.4360 35 1 2.3067 -3.8950 -4.5002 36 1 0.9426 -2.8045 -4.1531 37 1 1.5613 -2.7573 -6.5641 38 1 3.2043 -2.2349 -6.1226 39 1 0.7084 2.8152 -6.4704 40 1 3.5630 0.0714 -5.1330 41 1 2.1378 1.0305 -4.6575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595584093.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:12 Heat of formation + Delta-G solvation = -190.618160 kcal Electronic energy + Delta-G solvation = -27206.915456 eV Core-core repulsion = 22899.528828 eV Total energy + Delta-G solvation = -4307.386628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.20247 -47.72886 -47.64307 -39.82455 -37.29411 -35.77688 -33.45341 -32.01431 -31.17852 -29.67099 -29.01634 -25.05952 -24.66261 -23.76810 -21.86873 -21.51974 -20.09751 -18.95332 -18.59609 -18.45306 -17.76092 -17.24786 -16.19264 -16.07287 -14.83297 -14.68443 -14.55420 -14.53255 -14.15304 -14.08414 -13.86149 -13.81916 -13.78440 -13.68758 -13.33663 -13.02844 -12.79252 -12.64985 -12.54119 -12.30488 -12.05937 -11.90385 -11.54680 -11.16815 -10.97439 -10.86977 -10.46780 -10.36804 -10.21196 -9.86119 -9.43308 -9.08296 -8.93240 -8.81935 -8.40065 -7.62245 -5.96753 -4.05405 2.61258 3.11796 3.32605 3.40620 3.43520 3.63546 3.77564 3.86183 3.91299 4.36653 4.47420 4.59725 4.80219 5.03383 5.23622 5.29741 5.33281 5.34813 5.52252 5.61939 5.63616 5.90173 6.01055 6.17951 6.22734 6.33406 6.60233 6.67948 6.76410 6.82560 7.00705 7.08342 7.36578 7.51452 7.76583 7.95030 8.08507 8.43346 8.59538 8.98375 9.26520 9.60208 11.08499 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.003812 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.296954 B = 7343.655566 C = 7772.608053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.158 3.842 3 H 0.101 0.899 4 C -0.175 4.175 5 C 0.451 3.549 6 F -0.180 7.180 7 F -0.189 7.189 8 F -0.177 7.177 9 N -0.755 5.755 10 C 0.705 3.295 11 O -0.582 6.582 12 N -0.621 5.621 13 C 0.116 3.884 14 C -0.133 4.133 15 C -0.110 4.110 16 C 0.039 3.961 17 H 0.028 0.972 18 C -0.521 4.521 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.879 5.879 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.129 3.871 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.392 0.608 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.263 0.737 40 H 0.039 0.961 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.883 -9.186 17.010 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.052 3.948 3 H 0.119 0.881 4 C -0.214 4.214 5 C 0.397 3.603 6 F -0.162 7.162 7 F -0.171 7.171 8 F -0.159 7.159 9 N -0.416 5.416 10 C 0.406 3.594 11 O -0.459 6.459 12 N -0.357 5.357 13 C -0.008 4.008 14 C -0.171 4.171 15 C -0.147 4.147 16 C 0.020 3.980 17 H 0.046 0.954 18 C -0.559 4.559 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.517 5.517 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.210 1.210 26 C 0.009 3.991 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.141 0.859 31 H 0.131 0.869 32 H 0.229 0.771 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.702 -8.090 16.993 18.897 hybrid contribution 0.466 -0.129 -0.798 0.933 sum 2.168 -8.219 16.195 18.290 Atomic orbital electron populations 1.22159 0.93953 1.02393 1.03359 1.20633 0.95047 0.97689 0.81456 0.88062 1.23292 0.88679 1.06367 1.03039 1.20556 0.92479 0.73842 0.73381 1.93210 1.93265 1.33675 1.96034 1.93179 1.90935 1.81285 1.51701 1.93198 1.87655 1.83960 1.51070 1.45474 1.73413 1.13555 1.09129 1.15869 0.78198 0.85184 0.80109 1.90917 1.57901 1.12557 1.84568 1.47766 1.70281 1.09555 1.08094 1.21483 0.98859 0.82242 0.98228 1.21948 0.99788 0.97985 0.97403 1.21614 1.00471 0.98919 0.93744 1.18993 0.95444 0.89128 0.94419 0.95379 1.21114 1.43690 0.96729 0.94384 0.92349 1.25051 0.94821 0.97401 0.96736 1.69903 1.42401 1.09206 1.30176 0.86550 0.77719 0.79321 0.84497 1.19811 1.21051 1.20971 1.22185 0.98897 1.00174 0.77884 0.91636 0.90703 0.92340 0.85871 0.86890 0.77122 0.92144 0.92233 0.92381 0.92214 0.93096 0.93198 0.92738 0.94305 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.48 37.16 0.35 -1.38 16 2 C 0.16 1.87 2.56 -67.93 -0.17 1.70 16 3 H 0.10 1.46 7.03 -51.93 -0.37 1.09 16 4 C -0.17 -1.37 4.88 -26.74 -0.13 -1.50 16 5 C 0.45 4.74 3.16 37.16 0.12 4.86 16 6 F -0.18 -2.27 16.71 2.25 0.04 -2.24 16 7 F -0.19 -1.91 17.32 2.25 0.04 -1.87 16 8 F -0.18 -2.18 15.18 2.25 0.03 -2.15 16 9 N -0.75 -10.91 3.72 -58.68 -0.22 -11.13 16 10 C 0.70 14.27 8.26 -86.92 -0.72 13.55 16 11 O -0.58 -14.41 15.41 5.29 0.08 -14.33 16 12 N -0.62 -12.59 2.97 -178.51 -0.53 -13.12 16 13 C 0.12 1.81 6.43 -3.71 -0.02 1.79 16 14 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 15 C -0.11 -2.18 5.11 -26.68 -0.14 -2.31 16 16 C 0.04 0.97 2.25 -91.65 -0.21 0.77 16 17 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 18 C -0.52 -14.14 8.56 -34.44 -0.29 -14.44 16 19 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 21 N -0.88 -25.77 11.40 55.43 0.63 -25.14 16 22 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.13 3.17 5.39 -3.71 -0.02 3.15 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.39 4.71 5.32 -40.82 -0.22 4.49 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.74 5.56 -51.93 -0.29 0.45 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.12 3.53 5.16 -51.93 -0.27 3.26 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -32.47 337.86 -7.10 -39.57 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.75 Total: 3.42 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -1.49 Total: 5.57 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.12 Total: -49.39 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.08 Total: -14.33 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 0.11 Total: -6.26 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.47 -7.10 -39.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595584093.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.048 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds