Wall clock time and date at job start Tue Mar 31 2020 09:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47742 * 2 1 4 4 C 1.53008 * 109.47116 * 120.00241 * 2 1 3 5 5 C 1.52999 * 109.46802 * 296.41781 * 4 2 1 6 6 F 1.39907 * 109.46932 * 65.59131 * 5 4 2 7 7 F 1.39900 * 109.47043 * 305.59347 * 5 4 2 8 8 F 1.39901 * 109.47073 * 185.59135 * 5 4 2 9 9 C 1.50704 * 109.47179 * 239.99503 * 2 1 3 10 10 O 1.21270 * 120.00271 * 249.43614 * 9 2 1 11 11 N 1.34784 * 119.99295 * 69.43790 * 9 2 1 12 12 C 1.47069 * 120.88284 * 3.47656 * 11 9 2 13 13 C 1.53702 * 108.27752 * 128.75827 * 12 11 9 14 14 N 1.46894 * 109.25507 * 54.07741 * 13 12 11 15 15 C 1.46907 * 110.99690 * 172.60880 * 14 13 12 16 16 C 1.50701 * 109.47301 * 294.30337 * 15 14 13 17 17 H 1.08003 * 119.99792 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00018 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99785 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99988 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47251 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47413 * 119.99769 * 20 18 16 23 23 H 1.48502 * 109.46980 * 239.99757 * 20 18 16 24 24 C 1.46901 * 111.27151 * 296.75900 * 14 13 12 25 25 C 1.47083 * 120.87791 * 183.75538 * 11 9 2 26 26 H 1.08997 * 109.46816 * 306.42730 * 1 2 3 27 27 H 1.09000 * 109.47070 * 66.42589 * 1 2 3 28 28 H 1.08999 * 109.47298 * 186.42892 * 1 2 3 29 29 H 1.09003 * 109.47026 * 176.42419 * 4 2 1 30 30 H 1.09001 * 109.47034 * 56.41751 * 4 2 1 31 31 H 1.09010 * 109.62971 * 248.52081 * 12 11 9 32 32 H 1.08999 * 109.63158 * 9.10325 * 12 11 9 33 33 H 1.09002 * 109.64357 * 294.07413 * 13 12 11 34 34 H 1.08999 * 109.41691 * 173.94687 * 13 12 11 35 35 H 1.08994 * 109.47066 * 54.30568 * 15 14 13 36 36 H 1.08998 * 109.47041 * 174.30384 * 15 14 13 37 37 H 0.97002 * 119.99379 * 179.97438 * 19 18 16 38 38 H 1.08994 * 109.48888 * 303.14254 * 24 14 13 39 39 H 1.09001 * 109.48874 * 183.06482 * 24 14 13 40 40 H 1.09005 * 109.62718 * 350.89508 * 25 11 9 41 41 H 1.08995 * 109.62575 * 111.47413 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6049 0.0501 2.4969 6 9 0.2105 0.0128 2.6055 7 9 2.0293 1.3792 2.3949 8 9 2.1769 -0.5365 3.6309 9 6 2.0323 -0.7105 -1.2304 10 8 2.5823 -1.7864 -1.1273 11 7 1.8704 -0.1500 -2.4455 12 6 1.2750 1.1873 -2.5866 13 6 2.2073 2.0401 -3.4618 14 7 2.4616 1.3374 -4.7264 15 6 3.2042 2.1914 -5.6631 16 6 2.3459 3.3641 -6.0623 17 1 1.3487 3.4651 -5.6600 18 6 2.8337 4.3079 -6.9409 19 7 4.0482 4.1851 -7.4303 20 14 1.7701 5.7618 -7.4352 21 1 0.4557 5.6692 -6.7502 22 1 2.4452 7.0251 -7.0431 23 1 1.5635 5.7468 -8.9057 24 6 3.1663 0.0687 -4.4987 25 6 2.2789 -0.8623 -3.6658 26 1 -0.3633 0.6102 0.8269 27 1 -0.3633 0.4110 -0.9419 28 1 -0.3634 -1.0212 0.1151 29 1 3.1281 -0.7772 1.2178 30 1 1.6252 -1.7288 1.2819 31 1 0.2969 1.1045 -3.0608 32 1 1.1708 1.6473 -1.6039 33 1 3.1505 2.2042 -2.9407 34 1 1.7334 2.9999 -3.6678 35 1 4.1130 2.5533 -5.1824 36 1 3.4671 1.6150 -6.5500 37 1 4.3912 4.8490 -8.0488 38 1 4.0962 0.2603 -3.9633 39 1 3.3880 -0.4012 -5.4569 40 1 2.8388 -1.7580 -3.3969 41 1 1.3956 -1.1383 -4.2416 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602201051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:16 Heat of formation + Delta-G solvation = -187.390759 kcal Electronic energy + Delta-G solvation = -26475.006139 eV Core-core repulsion = 22167.759462 eV Total energy + Delta-G solvation = -4307.246677 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.40051 -47.89628 -47.83941 -40.37747 -37.75425 -35.26632 -34.48655 -32.47433 -30.94220 -29.36593 -28.23735 -25.90648 -24.79986 -23.49429 -22.87133 -21.72079 -20.38585 -19.16324 -18.82652 -18.33352 -17.88223 -16.60225 -16.44829 -15.90193 -15.61184 -14.99280 -14.79642 -14.73674 -14.53520 -14.37998 -14.20859 -14.12891 -13.98482 -13.95864 -13.69539 -13.66686 -13.19831 -12.77432 -12.36053 -12.30856 -11.96366 -11.89426 -11.68530 -11.57461 -11.33988 -11.09914 -11.01135 -10.80261 -10.68364 -10.56299 -9.95640 -9.71365 -9.32019 -8.59739 -8.50250 -7.39954 -6.10835 -4.13134 2.43541 2.53173 2.96486 3.25634 3.33628 3.37110 3.55871 3.70657 3.79571 4.29413 4.34671 4.50833 4.53934 4.70221 4.86481 5.17269 5.21066 5.25543 5.28534 5.30989 5.38004 5.47671 5.57949 5.59300 5.68194 5.77038 5.90236 5.94490 6.21505 6.36956 6.39336 6.57281 7.15771 7.21982 7.41322 7.69031 7.95370 8.05728 8.08811 8.41415 8.94243 9.51794 10.99993 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.021557 B = 0.003127 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.581196 B = 8951.040260 C = 9627.422785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.116 4.116 3 H 0.110 0.890 4 C -0.147 4.147 5 C 0.453 3.547 6 F -0.180 7.180 7 F -0.182 7.182 8 F -0.184 7.184 9 C 0.524 3.476 10 O -0.550 6.550 11 N -0.602 5.602 12 C 0.105 3.895 13 C 0.049 3.951 14 N -0.535 5.535 15 C 0.193 3.807 16 C -0.510 4.510 17 H 0.065 0.935 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.041 3.959 25 C 0.118 3.882 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.026 0.974 34 H 0.099 0.901 35 H -0.009 1.009 36 H 0.032 0.968 37 H 0.262 0.738 38 H 0.027 0.973 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.244 -8.609 17.561 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.137 4.137 3 H 0.128 0.872 4 C -0.185 4.185 5 C 0.399 3.601 6 F -0.162 7.162 7 F -0.164 7.164 8 F -0.166 7.166 9 C 0.311 3.689 10 O -0.429 6.429 11 N -0.335 5.335 12 C -0.018 4.018 13 C -0.080 4.080 14 N -0.261 5.261 15 C 0.068 3.932 16 C -0.549 4.549 17 H 0.083 0.917 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.089 4.089 25 C -0.005 4.005 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.044 0.956 34 H 0.117 0.883 35 H 0.009 0.991 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.283 -9.175 17.287 20.554 hybrid contribution 0.340 1.282 0.101 1.330 sum -5.943 -7.892 17.388 19.999 Atomic orbital electron populations 1.22183 0.91527 1.03871 1.04344 1.21268 0.98906 1.01403 0.92115 0.87240 1.22698 1.05718 1.00906 0.89208 1.20586 0.74992 0.78387 0.86107 1.93148 1.30271 1.96322 1.96426 1.93195 1.89763 1.37194 1.96231 1.93193 1.84670 1.83946 1.54751 1.20148 0.78894 0.85593 0.84223 1.90679 1.43764 1.22179 1.86231 1.48178 1.60881 1.18565 1.05846 1.22246 0.97748 0.81512 1.00245 1.22431 0.97548 0.97931 0.90113 1.62087 1.48662 1.04486 1.10832 1.19736 0.91961 0.91350 0.90109 1.21163 1.00816 1.06409 1.26478 0.91729 1.25000 0.95113 0.98353 0.96124 1.69968 1.16012 1.35846 1.31799 0.86440 0.80458 0.82118 0.78385 1.19608 1.21097 1.20989 1.22403 0.94630 0.92614 0.99220 1.21792 0.99381 0.95243 0.84042 0.90077 0.90825 0.91451 0.86622 0.86342 0.90275 0.89956 0.95598 0.88332 0.99078 0.94995 0.92884 0.95501 0.89988 0.89326 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 7.98 37.16 0.30 -1.06 16 2 C -0.12 -1.13 1.77 -91.77 -0.16 -1.29 16 3 H 0.11 1.00 6.41 -51.93 -0.33 0.67 16 4 C -0.15 -1.30 4.16 -26.73 -0.11 -1.41 16 5 C 0.45 4.08 3.10 37.16 0.12 4.20 16 6 F -0.18 -1.64 14.25 2.25 0.03 -1.60 16 7 F -0.18 -1.80 16.51 2.25 0.04 -1.77 16 8 F -0.18 -1.79 17.32 2.25 0.04 -1.75 16 9 C 0.52 6.90 6.98 -10.98 -0.08 6.83 16 10 O -0.55 -8.74 15.48 5.57 0.09 -8.66 16 11 N -0.60 -8.26 3.00 -172.18 -0.52 -8.78 16 12 C 0.11 1.36 5.16 -3.37 -0.02 1.35 16 13 C 0.05 0.84 5.47 -3.46 -0.02 0.82 16 14 N -0.54 -10.64 4.62 -235.47 -1.09 -11.73 16 15 C 0.19 4.78 4.72 -4.97 -0.02 4.76 16 16 C -0.51 -13.56 8.41 -34.44 -0.29 -13.85 16 17 H 0.06 1.68 7.13 -52.48 -0.37 1.30 16 18 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 19 N -0.90 -25.89 13.29 55.43 0.74 -25.16 16 20 Si 0.90 20.80 29.54 -169.99 -5.02 15.77 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.04 0.70 5.62 -3.70 -0.02 0.67 16 25 C 0.12 1.71 6.61 -3.60 -0.02 1.69 16 26 H 0.08 0.63 5.91 -51.93 -0.31 0.32 16 27 H 0.07 0.61 6.28 -51.93 -0.33 0.29 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.12 1.02 8.12 -51.93 -0.42 0.60 16 30 H 0.12 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 32 H 0.08 0.84 5.25 -51.93 -0.27 0.57 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 1.81 6.67 -51.93 -0.35 1.46 16 35 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 36 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 1.37 7.99 -51.93 -0.41 0.95 16 40 H 0.09 1.28 7.05 -51.93 -0.37 0.91 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 334.75 15.07 5.04 5.04 Total: -1.00 -30.14 334.75 -6.75 -36.88 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -5.67 Total: -2.38 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.43 Total: 4.12 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: -0.87 Total: -45.67 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.11 Total: -5.12 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.14 -6.75 -36.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602201051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.506 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds