Wall clock time and date at job start Tue Mar 31 2020 09:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47086 * 2 1 4 4 C 1.53004 * 109.46965 * 240.00133 * 2 1 3 5 5 C 1.52996 * 109.47309 * 65.85314 * 4 2 1 6 6 F 1.39905 * 109.46990 * 54.12900 * 5 4 2 7 7 F 1.39894 * 109.47355 * 174.13249 * 5 4 2 8 8 F 1.39905 * 109.47056 * 294.13382 * 5 4 2 9 9 C 1.50703 * 109.47333 * 120.00009 * 2 1 3 10 10 O 1.21285 * 119.99600 * 113.21390 * 9 2 1 11 11 N 1.34773 * 120.00256 * 293.21609 * 9 2 1 12 12 C 1.47080 * 120.88336 * 185.52673 * 11 9 2 13 13 C 1.53696 * 108.27543 * 128.75540 * 12 11 9 14 14 N 1.46900 * 109.26042 * 54.08124 * 13 12 11 15 15 C 1.46893 * 111.00063 * 172.60642 * 14 13 12 16 16 C 1.50699 * 109.47071 * 294.30162 * 15 14 13 17 17 H 1.08000 * 120.00344 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99516 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00391 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99331 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47429 * 60.00706 * 20 18 16 22 22 H 1.48510 * 109.46874 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47454 * 300.00219 * 20 18 16 24 24 C 1.46899 * 111.26669 * 296.75836 * 14 13 12 25 25 C 1.47089 * 120.87650 * 5.80357 * 11 9 2 26 26 H 1.08996 * 109.47563 * 53.15377 * 1 2 3 27 27 H 1.09007 * 109.47081 * 173.15890 * 1 2 3 28 28 H 1.09003 * 109.46638 * 293.15043 * 1 2 3 29 29 H 1.09001 * 109.47264 * 185.85444 * 4 2 1 30 30 H 1.09005 * 109.47135 * 305.85069 * 4 2 1 31 31 H 1.08996 * 109.62504 * 248.52046 * 12 11 9 32 32 H 1.08999 * 109.62374 * 9.10207 * 12 11 9 33 33 H 1.09005 * 109.64502 * 294.07738 * 13 12 11 34 34 H 1.08995 * 109.42025 * 173.94626 * 13 12 11 35 35 H 1.09000 * 109.47454 * 54.30320 * 15 14 13 36 36 H 1.09004 * 109.46775 * 174.30192 * 15 14 13 37 37 H 0.96996 * 119.99903 * 179.97438 * 19 18 16 38 38 H 1.08996 * 109.49433 * 303.13916 * 24 14 13 39 39 H 1.09006 * 109.51330 * 183.07635 * 24 14 13 40 40 H 1.08991 * 109.62824 * 350.89620 * 25 11 9 41 41 H 1.09002 * 109.62309 * 111.47871 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6536 0.0799 -2.4942 6 9 2.1132 1.3948 -2.3637 7 9 2.2329 -0.5065 -3.6245 8 9 0.2615 0.0841 -2.6326 9 6 2.0324 -0.7104 1.2305 10 8 2.6249 -1.7633 1.1233 11 7 1.8233 -0.1759 2.4499 12 6 2.4077 -0.7879 3.6528 13 6 3.1464 0.3061 4.4399 14 7 2.2274 1.4232 4.6960 15 6 2.8382 2.4120 5.5942 16 6 3.0501 1.7939 6.9522 17 1 2.7604 0.7688 7.1300 18 6 3.6148 2.5368 7.9672 19 7 3.9679 3.7849 7.7506 20 14 3.8767 1.7707 9.6507 21 1 4.7744 0.5944 9.5250 22 1 4.4943 2.7704 10.5588 23 1 2.5694 1.3386 10.2068 24 6 1.7890 2.0507 3.4422 25 6 0.9996 1.0317 2.6135 26 1 -0.3634 0.6162 -0.8223 27 1 -0.3633 -1.0204 -0.1224 28 1 -0.3633 0.4040 0.9450 29 1 3.1249 -0.8129 -1.1985 30 1 1.5936 -1.7142 -1.3032 31 1 1.6156 -1.2144 4.2682 32 1 3.1100 -1.5691 3.3617 33 1 3.9988 0.6618 3.8610 34 1 3.4953 -0.1025 5.3882 35 1 3.7975 2.7300 5.1861 36 1 2.1787 3.2750 5.6867 37 1 4.3648 4.3076 8.4648 38 1 2.6602 2.3821 2.8773 39 1 1.1536 2.9074 3.6666 40 1 0.7706 1.4540 1.6352 41 1 0.0748 0.7766 3.1310 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602201052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:19 Heat of formation + Delta-G solvation = -184.272513 kcal Electronic energy + Delta-G solvation = -26438.947207 eV Core-core repulsion = 22131.835748 eV Total energy + Delta-G solvation = -4307.111460 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.41196 -47.90556 -47.85680 -40.40518 -37.75289 -35.32233 -34.49022 -32.44848 -30.98431 -29.38295 -28.23611 -25.90236 -24.81661 -23.57771 -22.72220 -21.79706 -20.37471 -19.18716 -18.84280 -18.38832 -17.88463 -16.59774 -16.45076 -15.91678 -15.62200 -14.96246 -14.79707 -14.74380 -14.54647 -14.42962 -14.23179 -14.13415 -13.97466 -13.93724 -13.75460 -13.62488 -13.29408 -12.75517 -12.42470 -12.20827 -12.09239 -11.90962 -11.60521 -11.54280 -11.29884 -11.21979 -10.89263 -10.81077 -10.64752 -10.58959 -9.93888 -9.73237 -9.32392 -8.59392 -8.48788 -7.40138 -6.09911 -4.12099 2.42280 2.52946 2.96318 3.29370 3.33874 3.36348 3.54578 3.69080 3.78219 4.27122 4.35478 4.48369 4.52759 4.69457 4.85223 5.14779 5.16365 5.21870 5.26528 5.29978 5.36117 5.48080 5.51215 5.59164 5.73340 5.80845 5.90041 5.94227 6.13040 6.31846 6.45593 6.63036 7.15851 7.21865 7.41465 7.69446 7.95231 8.05940 8.09050 8.42219 8.94770 9.52694 11.00860 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.032691 B = 0.002831 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.292212 B = 9887.733303 C =10155.344758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.115 4.115 3 H 0.110 0.890 4 C -0.147 4.147 5 C 0.453 3.547 6 F -0.183 7.183 7 F -0.184 7.184 8 F -0.181 7.181 9 C 0.524 3.476 10 O -0.548 6.548 11 N -0.603 5.603 12 C 0.115 3.885 13 C 0.051 3.949 14 N -0.536 5.536 15 C 0.194 3.806 16 C -0.512 4.512 17 H 0.063 0.937 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 C 0.038 3.962 25 C 0.105 3.895 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.025 0.975 34 H 0.098 0.902 35 H -0.009 1.009 36 H 0.032 0.968 37 H 0.263 0.737 38 H 0.028 0.972 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.967 -6.410 -18.973 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.137 4.137 3 H 0.127 0.873 4 C -0.185 4.185 5 C 0.399 3.601 6 F -0.164 7.164 7 F -0.165 7.165 8 F -0.162 7.162 9 C 0.311 3.689 10 O -0.426 6.426 11 N -0.335 5.335 12 C -0.007 4.007 13 C -0.078 4.078 14 N -0.261 5.261 15 C 0.070 3.930 16 C -0.550 4.550 17 H 0.082 0.918 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.092 4.092 25 C -0.018 4.018 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.043 0.957 34 H 0.116 0.884 35 H 0.009 0.991 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.990 -6.964 -18.710 21.152 hybrid contribution 0.866 0.364 0.403 1.022 sum -6.124 -6.599 -18.307 20.401 Atomic orbital electron populations 1.22327 0.91691 1.04009 1.04530 1.21258 0.98833 1.01385 0.92205 0.87252 1.22696 1.06239 1.00371 0.89202 1.20588 0.74651 0.78755 0.86078 1.93192 1.88696 1.38587 1.95941 1.93192 1.84399 1.83935 1.55009 1.93150 1.30356 1.96451 1.96256 1.20141 0.79428 0.85144 0.84193 1.90690 1.43000 1.22585 1.86368 1.48171 1.50510 1.28386 1.06451 1.21988 0.98163 0.96091 0.84441 1.22431 0.93060 0.92324 0.99974 1.62089 1.41302 1.11498 1.11185 1.19721 0.92695 0.90006 0.90627 1.21097 1.40044 0.98932 0.94952 0.91835 1.24989 0.95546 0.94859 0.99110 1.69937 1.42300 1.08117 1.33351 0.86549 0.78493 0.78817 0.83490 1.20220 1.21343 1.20115 1.22423 0.98566 0.96320 0.91853 1.22177 0.94377 0.84959 1.00303 0.90138 0.91390 0.90380 0.86493 0.86403 0.90771 0.89390 0.95689 0.88417 0.99090 0.95009 0.92771 0.95426 0.89909 0.89504 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 7.92 37.16 0.29 -1.05 16 2 C -0.12 -1.10 1.80 -91.77 -0.17 -1.27 16 3 H 0.11 0.98 6.92 -51.93 -0.36 0.62 16 4 C -0.15 -1.28 4.15 -26.73 -0.11 -1.39 16 5 C 0.45 4.01 3.12 37.16 0.12 4.12 16 6 F -0.18 -1.77 16.46 2.25 0.04 -1.74 16 7 F -0.18 -1.77 17.32 2.25 0.04 -1.73 16 8 F -0.18 -1.60 14.36 2.25 0.03 -1.57 16 9 C 0.52 6.90 7.04 -10.99 -0.08 6.83 16 10 O -0.55 -8.81 15.47 5.55 0.09 -8.72 16 11 N -0.60 -8.28 3.00 -172.18 -0.52 -8.80 16 12 C 0.12 1.77 6.61 -3.36 -0.02 1.75 16 13 C 0.05 0.94 5.47 -3.46 -0.02 0.92 16 14 N -0.54 -10.63 4.62 -235.47 -1.09 -11.71 16 15 C 0.19 4.80 4.72 -4.98 -0.02 4.78 16 16 C -0.51 -13.76 8.41 -34.44 -0.29 -14.05 16 17 H 0.06 1.68 7.13 -52.49 -0.37 1.30 16 18 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 20 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.04 0.60 5.62 -3.70 -0.02 0.58 16 25 C 0.10 1.27 5.12 -3.60 -0.02 1.26 16 26 H 0.08 0.58 5.96 -51.93 -0.31 0.27 16 27 H 0.07 0.54 8.13 -51.92 -0.42 0.12 16 28 H 0.08 0.60 5.28 -51.93 -0.27 0.33 16 29 H 0.12 1.04 8.03 -51.93 -0.42 0.63 16 30 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.09 1.35 7.10 -51.93 -0.37 0.98 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.10 1.93 6.67 -51.93 -0.35 1.58 16 35 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 36 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 1.25 7.99 -51.93 -0.41 0.84 16 40 H 0.09 0.80 4.67 -51.93 -0.24 0.56 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 333.80 15.07 5.03 5.03 Total: -1.00 -30.34 333.80 -6.71 -37.05 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -5.61 Total: -2.53 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.43 Total: 3.93 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.87 Total: -45.76 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.11 Total: -5.03 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.34 -6.71 -37.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602201052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.219 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds