Wall clock time and date at job start Tue Mar 31 2020 09:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 117.00093 * 2 1 4 4 C 1.38747 * 120.05656 * 359.97438 * 3 2 1 5 5 C 1.38131 * 119.94589 * 179.97438 * 4 3 2 6 6 C 1.38279 * 120.05197 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94250 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.46794 * 90.00499 * 7 6 5 9 9 C 1.46907 * 111.00195 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.46911 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.47372 * 55.00871 * 10 9 8 12 12 C 1.53000 * 109.47514 * 295.00013 * 10 9 8 13 13 C 1.53005 * 109.46517 * 175.00311 * 10 9 8 14 14 C 1.50703 * 109.46844 * 185.00286 * 13 10 9 15 15 H 1.07998 * 120.00241 * 359.97438 * 14 13 10 16 16 C 1.37882 * 120.00095 * 180.02562 * 14 13 10 17 17 N 1.31509 * 120.00245 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99863 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46867 * 90.00265 * 18 16 14 20 20 H 1.48491 * 109.47379 * 210.00468 * 18 16 14 21 21 H 1.48504 * 109.47072 * 330.00698 * 18 16 14 22 22 C 1.38247 * 120.11515 * 0.02679 * 6 5 4 23 23 C 1.38160 * 120.05350 * 359.73942 * 22 6 5 24 24 N 1.48008 * 120.03166 * 180.25886 * 23 22 6 25 25 O 1.21800 * 119.99488 * 0.22639 * 24 23 22 26 26 O 1.21791 * 120.00519 * 180.23345 * 24 23 22 27 27 H 1.09001 * 109.47103 * 300.00408 * 1 2 3 28 28 H 1.09004 * 109.47054 * 59.99912 * 1 2 3 29 29 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.02813 * 0.02562 * 4 3 2 31 31 H 1.07994 * 119.97253 * 180.02562 * 5 4 3 32 32 H 1.09005 * 109.47269 * 210.00238 * 7 6 5 33 33 H 1.09001 * 109.47342 * 330.00645 * 7 6 5 34 34 H 1.00897 * 111.00071 * 303.95418 * 8 7 6 35 35 H 1.08995 * 109.46950 * 300.00470 * 9 8 7 36 36 H 1.09003 * 109.46697 * 59.99986 * 9 8 7 37 37 H 1.08998 * 109.46883 * 300.00389 * 12 10 9 38 38 H 1.08998 * 109.46943 * 60.00285 * 12 10 9 39 39 H 1.08997 * 109.47258 * 180.02562 * 12 10 9 40 40 H 1.08999 * 109.47388 * 305.00002 * 13 10 9 41 41 H 1.08998 * 109.47536 * 65.00476 * 13 10 9 42 42 H 0.96996 * 120.00246 * 179.97438 * 17 16 14 43 43 H 1.08005 * 119.97718 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 -0.0005 5 6 1.9210 3.6048 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0184 0.0028 8 7 4.2070 5.4542 1.3882 9 6 4.8743 6.7624 1.4287 10 6 5.0860 7.1820 2.8846 11 1 5.6312 6.3997 3.4126 12 6 3.7282 7.3993 3.5555 13 6 5.8905 8.4827 2.9285 14 6 6.2047 8.8309 4.3607 15 1 5.8642 8.1890 5.1597 16 6 6.9259 9.9696 4.6511 17 7 7.1996 10.2738 5.9010 18 14 7.5142 11.0803 3.2693 19 1 6.4799 12.1074 2.9855 20 1 8.7770 11.7482 3.6745 21 1 7.7531 10.2682 2.0491 22 6 4.0561 2.5170 0.0021 23 6 3.4312 1.2848 0.0065 24 7 4.2390 0.0446 0.0128 25 8 5.4552 0.1101 0.0184 26 8 3.6876 -1.0414 0.0123 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2129 2.3203 -0.0005 31 1 1.3342 4.5113 0.0000 32 1 4.9448 4.9382 -0.5100 33 1 3.3588 5.7464 -0.5115 34 1 3.3398 5.4742 1.9035 35 1 5.8389 6.6939 0.9258 36 1 4.2533 7.5027 0.9241 37 1 3.1832 8.1817 3.0274 38 1 3.1551 6.4727 3.5242 39 1 3.8791 7.6986 4.5926 40 1 6.8199 8.3540 2.3737 41 1 5.3072 9.2861 2.4789 42 1 7.7072 11.0746 6.1052 43 1 5.1346 2.5750 0.0030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602529992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:51 Heat of formation + Delta-G solvation = -25.460819 kcal Electronic energy + Delta-G solvation = -24583.448617 eV Core-core repulsion = 20825.080489 eV Total energy + Delta-G solvation = -3758.368128 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.28801 -40.70105 -38.72227 -37.00925 -36.48460 -34.34522 -32.52880 -32.17174 -30.87024 -28.33472 -27.56637 -26.73268 -26.10558 -24.41172 -22.96381 -22.02621 -21.68133 -19.54097 -19.05590 -18.74219 -18.18699 -17.62487 -16.98472 -16.82686 -16.34863 -15.89551 -15.17469 -15.04301 -14.97554 -14.40618 -14.05606 -13.76482 -13.37486 -13.30699 -12.83557 -12.78733 -12.27164 -12.17555 -12.06768 -11.82872 -11.69000 -11.65434 -11.56017 -11.11922 -11.11071 -11.08657 -10.77875 -10.50166 -10.05537 -9.88261 -9.76803 -9.55165 -9.10890 -8.99887 -8.54432 -8.40314 -6.04265 -4.01606 -0.31494 0.54782 1.16125 1.29647 2.42782 2.83326 3.28744 3.36992 3.39791 3.87884 3.97602 4.16160 4.41905 4.44317 4.45905 4.51466 4.55570 4.56743 4.89775 4.94702 5.08045 5.20721 5.28963 5.34792 5.41354 5.55368 5.56244 5.75701 5.85696 5.89707 6.03672 6.20773 6.27081 6.36434 6.52702 6.66087 6.89071 6.98222 7.06598 7.26635 7.35090 7.46183 7.62846 7.79587 8.54447 9.01218 9.58300 11.09143 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.023841 B = 0.002381 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.182540 B =11756.437210 C =12188.940599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.284 6.284 3 C 0.191 3.809 4 C -0.213 4.213 5 C -0.021 4.021 6 C -0.113 4.113 7 C 0.099 3.901 8 N -0.686 5.686 9 C 0.062 3.938 10 C -0.076 4.076 11 H 0.073 0.927 12 C -0.136 4.136 13 C -0.008 4.008 14 C -0.514 4.514 15 H 0.074 0.926 16 C 0.065 3.935 17 N -0.904 5.904 18 Si 0.879 3.121 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.266 1.266 22 C 0.003 3.997 23 C -0.081 4.081 24 N 0.037 4.963 25 O -0.175 6.175 26 O -0.144 6.144 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.111 0.889 30 H 0.151 0.849 31 H 0.143 0.857 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.341 0.659 35 H 0.070 0.930 36 H 0.026 0.974 37 H 0.040 0.960 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.016 0.984 41 H 0.009 0.991 42 H 0.262 0.738 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.629 -16.795 -16.244 28.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.194 6.194 3 C 0.142 3.858 4 C -0.232 4.232 5 C -0.040 4.040 6 C -0.114 4.114 7 C -0.030 4.030 8 N -0.318 5.318 9 C -0.067 4.067 10 C -0.095 4.095 11 H 0.091 0.909 12 C -0.193 4.193 13 C -0.046 4.046 14 C -0.552 4.552 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.543 5.543 18 Si 0.706 3.294 19 H -0.205 1.205 20 H -0.214 1.214 21 H -0.191 1.191 22 C -0.016 4.016 23 C -0.166 4.166 24 N 0.555 4.445 25 O -0.386 6.386 26 O -0.363 6.363 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.168 0.832 31 H 0.161 0.839 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.160 0.840 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.088 0.912 40 H 0.034 0.966 41 H 0.027 0.973 42 H 0.072 0.928 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.229 -16.608 -16.068 28.238 hybrid contribution -0.460 1.144 -0.834 1.488 sum -16.689 -15.465 -16.902 28.344 Atomic orbital electron populations 1.23306 0.77182 1.05224 1.01824 1.86416 1.22285 1.24474 1.86224 1.18675 0.89451 0.86444 0.91233 1.21270 1.00935 0.90910 1.10125 1.21344 0.94154 0.97857 0.90648 1.19784 0.92994 0.95232 1.03409 1.20860 0.99897 0.90423 0.91818 1.60610 1.29415 1.30720 1.11030 1.22214 0.98168 0.87017 0.99277 1.21041 0.96808 0.99525 0.92124 0.90891 1.21755 0.96294 0.98675 1.02605 1.19600 0.94710 0.92185 0.98101 1.21121 1.34154 1.08619 0.91320 0.90830 1.25036 0.95697 0.97621 0.95252 1.69908 1.40409 1.26292 1.17735 0.86799 0.78357 0.81030 0.83194 1.20473 1.21443 1.19062 1.20871 1.02438 0.88160 0.90177 1.20527 0.88113 0.85934 1.21981 1.43311 1.01190 1.02343 0.97676 1.94555 0.95515 1.93920 1.54593 1.94566 1.74341 1.14853 1.52557 0.91871 0.92007 0.87090 0.83158 0.83883 0.89512 0.93798 0.84009 0.91134 0.95556 0.94060 0.94837 0.91230 0.96609 0.97257 0.92791 0.82059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.28 -2.64 8.51 -41.54 -0.35 -3.00 16 3 C 0.19 1.83 6.67 -39.22 -0.26 1.56 16 4 C -0.21 -1.42 9.04 -39.43 -0.36 -1.77 16 5 C -0.02 -0.14 9.69 -39.61 -0.38 -0.53 16 6 C -0.11 -0.98 5.39 -104.60 -0.56 -1.54 16 7 C 0.10 0.92 5.81 -4.97 -0.03 0.89 16 8 N -0.69 -8.33 6.49 -115.05 -0.75 -9.08 16 9 C 0.06 0.90 5.14 -3.82 -0.02 0.88 16 10 C -0.08 -1.41 2.55 -90.62 -0.23 -1.64 16 11 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 12 C -0.14 -2.34 8.78 37.16 0.33 -2.01 16 13 C -0.01 -0.19 3.52 -27.88 -0.10 -0.28 16 14 C -0.51 -14.26 8.96 -34.44 -0.31 -14.57 16 15 H 0.07 2.20 7.30 -52.49 -0.38 1.81 16 16 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 17 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 18 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 22 C 0.00 0.03 9.20 -39.61 -0.36 -0.33 16 23 C -0.08 -0.94 6.87 -79.81 -0.55 -1.48 16 24 N 0.04 0.52 4.45 34.03 0.15 0.67 16 25 O -0.18 -2.62 18.45 -29.46 -0.54 -3.16 16 26 O -0.14 -2.13 17.24 -36.49 -0.63 -2.76 16 27 H 0.06 0.19 7.66 -51.93 -0.40 -0.20 16 28 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 29 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.15 0.54 6.30 -52.48 -0.33 0.21 16 31 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 32 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 33 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 34 H 0.34 3.90 6.98 -39.29 -0.27 3.62 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.03 0.47 6.68 -51.93 -0.35 0.13 16 39 H 0.07 1.38 6.95 -51.93 -0.36 1.02 16 40 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 41 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.16 1.64 7.61 -52.48 -0.40 1.24 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -33.16 359.37 -8.75 -41.91 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -6.20 Total: -1.90 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -1.94 Total: -17.99 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.18 Total: -35.33 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -1.53 Total: -8.91 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.16 -8.75 -41.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602529992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.447 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds