Wall clock time and date at job start Tue Mar 31 2020 09:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46807 * 2 1 4 4 C 1.52996 * 109.46840 * 119.99720 * 2 1 3 5 5 C 1.50703 * 109.47343 * 295.00056 * 4 2 1 6 6 H 1.07997 * 119.99829 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00190 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00148 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00154 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47266 * 89.99960 * 9 7 5 11 11 H 1.48492 * 109.47201 * 210.00404 * 9 7 5 12 12 H 1.48503 * 109.46831 * 329.99961 * 9 7 5 13 13 C 1.53003 * 109.47203 * 239.99593 * 2 1 3 14 14 N 1.46903 * 109.46899 * 65.00435 * 13 2 1 15 15 C 1.46898 * 110.99673 * 179.97438 * 14 13 2 16 16 C 1.53006 * 109.47006 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.46881 * 64.99925 * 16 15 14 18 18 C 1.35903 * 117.00184 * 180.02562 * 17 16 15 19 19 C 1.38731 * 120.05142 * 359.72161 * 18 17 16 20 20 C 1.38148 * 119.94135 * 179.77255 * 19 18 17 21 21 C 1.38269 * 120.05408 * 0.51036 * 20 19 18 22 22 N 1.48008 * 119.94112 * 179.72596 * 21 20 19 23 23 O 1.21801 * 119.99646 * 180.02562 * 22 21 20 24 24 O 1.21797 * 120.00143 * 0.02562 * 22 21 20 25 25 C 1.38258 * 120.11201 * 359.73978 * 21 20 19 26 26 C 1.38146 * 120.05960 * 0.02562 * 25 21 20 27 27 H 1.08999 * 109.46977 * 60.00342 * 1 2 3 28 28 H 1.09001 * 109.47262 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47566 * 300.00626 * 1 2 3 30 30 H 1.08994 * 109.47346 * 55.00190 * 4 2 1 31 31 H 1.09001 * 109.47187 * 175.00039 * 4 2 1 32 32 H 0.96996 * 120.00514 * 180.02562 * 8 7 5 33 33 H 1.08993 * 109.47042 * 305.00375 * 13 2 1 34 34 H 1.08995 * 109.46589 * 184.99616 * 13 2 1 35 35 H 1.00906 * 110.99345 * 303.95072 * 14 13 2 36 36 H 1.09001 * 109.47062 * 59.99745 * 15 14 13 37 37 H 1.08993 * 109.47084 * 299.99192 * 15 14 13 38 38 H 1.08992 * 109.47046 * 184.99823 * 16 15 14 39 39 H 1.08997 * 109.47395 * 305.00364 * 16 15 14 40 40 H 1.07997 * 120.02919 * 0.02562 * 19 18 17 41 41 H 1.07999 * 119.96821 * 180.22947 * 20 19 18 42 42 H 1.07998 * 119.97490 * 180.02562 * 25 21 20 43 43 H 1.08004 * 120.03308 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4015 3.7283 8 7 1.6456 0.2780 4.7993 9 14 2.9646 -1.9874 3.9029 10 1 4.4178 -1.6829 3.8786 11 1 2.6173 -2.6415 5.1900 12 1 2.6310 -2.8986 2.7787 13 6 2.0400 -0.7213 -1.2492 14 7 1.6515 0.0373 -2.4456 15 6 2.1259 -0.6267 -3.6671 16 6 1.7026 0.1907 -4.8892 17 8 2.3629 1.4578 -4.8668 18 6 2.0945 2.3117 -5.8895 19 6 1.2180 1.9354 -6.8968 20 6 0.9432 2.8070 -7.9328 21 6 1.5489 4.0493 -7.9717 22 7 1.2573 4.9788 -9.0860 23 8 1.7907 6.0732 -9.1216 24 8 0.4839 4.6493 -9.9674 25 6 2.4268 4.4246 -6.9717 26 6 2.7013 3.5586 -5.9310 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6053 -1.7197 1.2952 31 1 3.1262 -0.7994 1.2057 32 1 1.8934 -0.0445 5.6799 33 1 1.6054 -1.7198 -1.2951 34 1 3.1263 -0.7994 -1.2055 35 1 0.6529 0.1792 -2.4753 36 1 1.6922 -1.6247 -3.7299 37 1 3.2128 -0.7038 -3.6399 38 1 1.9764 -0.3457 -5.7977 39 1 0.6235 0.3431 -4.8685 40 1 0.7478 0.9635 -6.8691 41 1 0.2580 2.5160 -8.7153 42 1 2.8983 5.3956 -7.0041 43 1 3.3874 3.8520 -5.1502 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602541539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:11 Heat of formation + Delta-G solvation = -27.605824 kcal Electronic energy + Delta-G solvation = -23893.421320 eV Core-core repulsion = 20134.960178 eV Total energy + Delta-G solvation = -3758.461142 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.41940 -40.82351 -38.37738 -37.11653 -36.80033 -34.38938 -32.32605 -31.97084 -31.47493 -29.50125 -27.42175 -26.41377 -25.40360 -24.04267 -22.84152 -22.14938 -21.76061 -19.70881 -19.12897 -18.89353 -18.87896 -17.76667 -17.00942 -16.57685 -16.54362 -15.65959 -15.49776 -14.80880 -14.43284 -14.31717 -14.17439 -14.06965 -13.66328 -13.44371 -13.31497 -12.78168 -12.23567 -12.19761 -12.07713 -11.84200 -11.76987 -11.60329 -11.45885 -11.43530 -11.39062 -11.06046 -10.76515 -10.48342 -9.98471 -9.97817 -9.72910 -9.53382 -9.20964 -9.11710 -8.55834 -8.41399 -6.05809 -4.03167 -0.43140 0.42783 1.04745 1.15261 2.48146 2.81294 3.27598 3.35251 3.37572 3.84444 3.96039 4.02193 4.16749 4.36649 4.42647 4.50179 4.58362 4.70007 4.82378 5.00977 5.12188 5.19573 5.27349 5.27822 5.38035 5.47167 5.54041 5.58998 5.68331 5.84926 6.02456 6.10596 6.25990 6.35625 6.62709 6.68002 6.88734 6.96919 7.06617 7.23127 7.34796 7.38993 7.45867 7.78059 8.52928 8.99606 9.56720 11.07548 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.030045 B = 0.001940 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.726783 B =14429.691839 C =14808.777021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.072 0.928 4 C -0.008 4.008 5 C -0.514 4.514 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.904 5.904 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.685 5.685 15 C 0.056 3.944 16 C 0.057 3.943 17 O -0.278 6.278 18 C 0.193 3.807 19 C -0.216 4.216 20 C -0.010 4.010 21 C -0.094 4.094 22 N 0.037 4.963 23 O -0.168 6.168 24 O -0.172 6.172 25 C -0.013 4.013 26 C -0.151 4.151 27 H 0.033 0.967 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.013 0.987 31 H 0.011 0.989 32 H 0.262 0.738 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.339 0.661 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.159 0.841 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 0.612 -26.556 26.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 H 0.091 0.909 4 C -0.046 4.046 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.543 5.543 9 Si 0.707 3.293 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.066 4.066 14 N -0.317 5.317 15 C -0.073 4.073 16 C -0.019 4.019 17 O -0.188 6.188 18 C 0.144 3.856 19 C -0.235 4.235 20 C -0.030 4.030 21 C -0.178 4.178 22 N 0.554 4.446 23 O -0.382 6.382 24 O -0.385 6.385 25 C -0.032 4.032 26 C -0.170 4.170 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.158 0.842 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.168 0.832 41 H 0.172 0.828 42 H 0.177 0.823 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.904 0.586 -25.616 25.639 hybrid contribution -0.353 -1.521 -0.181 1.572 sum 0.551 -0.935 -25.797 25.820 Atomic orbital electron populations 1.21752 0.96217 1.00486 1.00861 1.21033 0.95224 1.00284 0.92932 0.90934 1.19600 0.95612 0.96011 0.93398 1.21119 1.35465 1.09541 0.89074 0.90820 1.25040 0.95705 0.96927 0.95977 1.69910 1.47119 1.39258 0.98031 0.86795 0.80686 0.84435 0.77423 1.20350 1.21482 1.19187 1.22188 1.00490 0.94367 0.89604 1.60532 1.19692 1.50435 1.01078 1.22015 1.02398 0.94163 0.88752 1.23147 0.97141 0.81945 0.99618 1.86341 1.64318 1.26438 1.41751 1.19502 0.90074 0.90032 0.85971 1.21302 1.03863 1.02355 0.96020 1.20800 0.95011 0.89702 0.97438 1.20957 1.09904 0.93482 0.93421 1.43526 0.98617 1.01160 1.01299 1.94539 1.52214 1.08330 1.83155 1.94528 1.31365 1.81256 1.31380 1.20856 0.92282 1.00388 0.89719 1.20522 1.04261 0.91647 1.00619 0.94812 0.94064 0.91228 0.96823 0.97100 0.92790 0.95691 0.91289 0.84159 0.92837 0.89614 0.90945 0.91276 0.83199 0.82828 0.82317 0.82431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.77 37.16 0.33 -2.01 16 2 C -0.08 -1.41 2.55 -90.62 -0.23 -1.64 16 3 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 4 C -0.01 -0.19 3.52 -27.88 -0.10 -0.29 16 5 C -0.51 -14.21 8.96 -34.44 -0.31 -14.51 16 6 H 0.07 2.19 7.30 -52.49 -0.38 1.81 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 9 Si 0.88 21.39 27.47 -169.99 -4.67 16.73 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 13 C 0.06 0.91 5.14 -3.82 -0.02 0.89 16 14 N -0.68 -8.21 6.45 -113.78 -0.73 -8.95 16 15 C 0.06 0.48 6.07 -3.82 -0.02 0.46 16 16 C 0.06 0.37 5.02 37.16 0.19 0.56 16 17 O -0.28 -2.49 10.08 -19.44 -0.20 -2.68 16 18 C 0.19 1.50 6.69 -39.22 -0.26 1.24 16 19 C -0.22 -1.36 9.04 -39.43 -0.36 -1.71 16 20 C -0.01 -0.07 9.55 -39.60 -0.38 -0.45 16 21 C -0.09 -0.84 6.85 -79.93 -0.55 -1.39 16 22 N 0.04 0.42 4.45 33.97 0.15 0.57 16 23 O -0.17 -2.03 18.44 -29.46 -0.54 -2.57 16 24 O -0.17 -2.05 18.44 -29.46 -0.54 -2.60 16 25 C -0.01 -0.10 9.55 -39.61 -0.38 -0.48 16 26 C -0.15 -1.12 9.99 -39.43 -0.39 -1.51 16 27 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.38 6.95 -51.93 -0.36 1.02 16 30 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 31 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.34 3.80 6.98 -39.29 -0.27 3.53 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.31 7.65 -51.93 -0.40 -0.09 16 39 H 0.07 0.38 7.67 -51.93 -0.40 -0.02 16 40 H 0.15 0.58 6.30 -52.49 -0.33 0.25 16 41 H 0.15 0.87 7.61 -52.49 -0.40 0.47 16 42 H 0.16 0.98 7.60 -52.49 -0.40 0.58 16 43 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 361.94 15.07 5.45 5.45 Total: -1.00 -32.20 361.94 -9.07 -41.27 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -6.18 Total: -1.34 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -2.58 Total: -19.10 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.19 Total: -35.17 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -1.28 Total: -7.85 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.20 -9.07 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602541539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.669 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds