Wall clock time and date at job start Tue Mar 31 2020 09:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 5 5 C 1.50701 * 109.46807 * 65.00319 * 4 2 1 6 6 H 1.07998 * 120.00496 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99832 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00049 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46764 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47029 * 119.99717 * 9 7 5 12 12 H 1.48494 * 109.47080 * 239.99687 * 9 7 5 13 13 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 14 14 N 1.46901 * 109.46769 * 294.99558 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 H 1.08998 * 110.43719 * 327.54349 * 15 14 13 17 17 C 1.54635 * 110.48555 * 205.00273 * 15 14 13 18 18 C 1.54483 * 101.76197 * 216.52407 * 17 15 14 19 19 N 1.46761 * 105.47275 * 25.41566 * 18 17 15 20 20 C 1.46501 * 124.34845 * 162.95949 * 19 18 17 21 21 C 1.53008 * 109.46883 * 90.00094 * 20 19 18 22 22 F 1.39897 * 109.47038 * 60.00381 * 21 20 19 23 23 F 1.39903 * 109.47073 * 180.02562 * 21 20 19 24 24 F 1.39902 * 109.46843 * 299.99937 * 21 20 19 25 25 C 1.34419 * 111.30535 * 342.98567 * 19 18 17 26 26 O 1.21281 * 124.94490 * 180.41376 * 25 19 18 27 27 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 28 28 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 30 30 H 1.08993 * 109.47416 * 185.00006 * 4 2 1 31 31 H 1.09001 * 109.46966 * 305.00739 * 4 2 1 32 32 H 0.97010 * 119.99808 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47398 * 54.99853 * 13 2 1 34 34 H 1.09001 * 109.47194 * 175.00033 * 13 2 1 35 35 H 1.00899 * 111.00283 * 303.95539 * 14 13 2 36 36 H 1.08998 * 110.96706 * 334.63827 * 17 15 14 37 37 H 1.08995 * 110.96725 * 98.40358 * 17 15 14 38 38 H 1.09001 * 110.24385 * 144.41459 * 18 17 15 39 39 H 1.08999 * 110.24503 * 266.32668 * 18 17 15 40 40 H 1.08999 * 109.47343 * 209.99958 * 20 19 18 41 41 H 1.08997 * 109.47388 * 330.00568 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0801 0.9741 -2.3758 7 6 1.9924 -0.4024 -3.7283 8 7 2.6747 -1.5200 -3.8511 9 14 1.4977 0.5619 -5.2498 10 1 0.7404 1.7730 -4.8436 11 1 2.7156 0.9665 -5.9971 12 1 0.6435 -0.2875 -6.1180 13 6 2.0400 -0.7213 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.1257 -0.6264 3.6672 16 1 2.1313 -1.7083 3.5347 17 6 1.2427 -0.2337 4.8743 18 6 2.2831 -0.1569 6.0137 19 7 3.5632 0.1314 5.3564 20 6 4.7515 0.6381 6.0473 21 6 5.5978 -0.5391 6.5364 22 9 5.9908 -1.3173 5.4422 23 9 6.7323 -0.0553 7.1967 24 9 4.8436 -1.3210 7.4179 25 6 3.5050 -0.1285 4.0388 26 8 4.4246 0.0150 3.2612 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.1263 -0.7996 -1.2056 31 1 1.6053 -1.7199 -1.2951 32 1 2.9220 -1.8430 -4.7318 33 1 1.6053 -1.7198 1.2952 34 1 3.1263 -0.7995 1.2057 35 1 1.9882 0.9874 2.3966 36 1 0.7693 0.7347 4.7126 37 1 0.4968 -1.0018 5.0782 38 1 2.0257 0.6446 6.7062 39 1 2.3348 -1.1089 6.5420 40 1 5.3391 1.2473 5.3604 41 1 4.4454 1.2443 6.8998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602564083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:15 Heat of formation + Delta-G solvation = -197.851339 kcal Electronic energy + Delta-G solvation = -26008.998427 eV Core-core repulsion = 21701.298145 eV Total energy + Delta-G solvation = -4307.700282 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.38685 -47.94505 -47.83586 -40.86695 -36.75118 -36.73806 -34.44826 -32.58921 -31.33735 -28.69399 -27.33638 -26.51971 -24.75322 -23.89780 -22.37075 -21.90228 -20.22981 -19.10388 -18.84189 -18.74674 -18.07545 -17.08645 -16.44741 -16.24024 -15.85403 -14.89329 -14.79498 -14.61919 -14.47457 -14.33822 -14.22915 -14.04258 -14.01157 -13.94506 -13.82669 -13.51792 -13.11357 -12.88203 -12.63664 -12.37278 -12.22668 -11.79832 -11.62986 -11.38757 -11.28840 -10.85271 -10.75981 -10.37493 -10.26265 -10.18901 -9.67052 -9.36892 -9.12201 -8.90655 -8.28901 -8.23980 -5.93277 -3.94287 2.03812 2.24759 2.59131 3.34981 3.42332 3.44364 3.46316 3.58441 3.90122 3.96898 4.21271 4.28412 4.51953 4.57137 4.70389 4.79451 4.82171 5.05917 5.18449 5.42537 5.61878 5.70484 5.72873 5.87680 5.97086 6.20466 6.39432 6.53139 6.58020 6.68143 6.95813 7.16403 7.17183 7.28019 7.44941 7.75228 7.79985 7.90534 8.07179 8.50759 9.12297 9.68810 11.18319 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.025160 B = 0.002740 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.615814 B =10215.440852 C =10903.994256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.057 3.943 14 N -0.656 5.656 15 C 0.060 3.940 16 H 0.116 0.884 17 C -0.118 4.118 18 C 0.100 3.900 19 N -0.624 5.624 20 C 0.087 3.913 21 C 0.431 3.569 22 F -0.174 7.174 23 F -0.182 7.182 24 F -0.184 7.184 25 C 0.488 3.512 26 O -0.501 6.501 27 H 0.054 0.946 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.014 0.986 31 H 0.016 0.984 32 H 0.259 0.741 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.342 0.658 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.126 0.874 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.031 3.501 27.107 27.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.072 4.072 14 N -0.286 5.286 15 C -0.055 4.055 16 H 0.134 0.866 17 C -0.156 4.156 18 C -0.023 4.023 19 N -0.360 5.360 20 C -0.039 4.039 21 C 0.375 3.625 22 F -0.155 7.155 23 F -0.164 7.164 24 F -0.165 7.165 25 C 0.274 3.726 26 O -0.372 6.372 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.032 0.968 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.161 0.839 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.144 0.856 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.029 3.174 26.572 26.761 hybrid contribution 1.097 0.367 -0.708 1.357 sum 1.126 3.541 25.863 26.129 Atomic orbital electron populations 1.21604 0.95729 1.00573 1.00118 1.21190 0.95855 0.99000 0.93988 0.92811 1.19120 0.96095 0.95513 0.90327 1.21269 1.34467 1.08245 0.90970 0.92535 1.25029 0.95385 0.95106 0.99101 1.69984 1.39186 1.21226 1.23221 0.86576 0.78220 0.80114 0.83332 1.19766 1.21134 1.21119 1.22331 0.98664 0.97322 0.88840 1.60903 1.61041 1.05990 1.00622 1.22425 0.88881 1.01361 0.92812 0.86580 1.22669 0.96783 1.04566 0.91587 1.22306 0.81611 1.02106 0.96262 1.48224 1.11749 1.66758 1.09252 1.22457 0.87820 0.92326 1.01247 1.21366 0.79534 0.85894 0.75692 1.93262 1.91433 1.77079 1.53715 1.93195 1.53584 1.87840 1.81770 1.93176 1.75877 1.77340 1.70156 1.22464 0.91924 0.76809 0.81388 1.90811 1.42058 1.51134 1.53236 0.92731 0.94105 0.94039 0.96775 0.96545 0.93178 0.91342 0.94137 0.83939 0.88902 0.88514 0.89824 0.90477 0.85569 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.89 37.16 0.33 -2.01 16 2 C -0.08 -1.68 2.48 -90.62 -0.22 -1.91 16 3 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.55 8.41 -34.44 -0.29 -14.84 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 9 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 13 C 0.06 0.99 4.89 -3.82 -0.02 0.97 16 14 N -0.66 -8.97 5.77 -106.73 -0.62 -9.58 16 15 C 0.06 0.66 3.26 -67.72 -0.22 0.44 16 16 H 0.12 1.30 7.82 -51.93 -0.41 0.89 16 17 C -0.12 -0.80 6.88 -25.09 -0.17 -0.97 16 18 C 0.10 0.57 7.22 -3.12 -0.02 0.55 16 19 N -0.62 -5.50 2.81 -172.41 -0.48 -5.98 16 20 C 0.09 0.63 5.91 -4.04 -0.02 0.61 16 21 C 0.43 4.01 3.29 37.16 0.12 4.13 16 22 F -0.17 -2.24 16.96 2.25 0.04 -2.20 16 23 F -0.18 -1.68 17.32 2.25 0.04 -1.64 16 24 F -0.18 -1.68 17.09 2.25 0.04 -1.64 16 25 C 0.49 6.17 7.06 -10.86 -0.08 6.09 16 26 O -0.50 -8.61 16.91 5.56 0.09 -8.51 16 27 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.68 7.75 -51.93 -0.40 0.28 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 33 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 34 H 0.04 0.80 7.49 -51.93 -0.39 0.41 16 35 H 0.34 4.75 8.44 -39.29 -0.33 4.41 16 36 H 0.09 0.62 8.09 -51.93 -0.42 0.20 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.40 8.12 -51.93 -0.42 -0.02 16 40 H 0.13 0.97 7.93 -51.93 -0.41 0.55 16 41 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 352.21 15.07 5.31 5.31 Total: -1.00 -33.92 352.21 -6.71 -40.63 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.03 Total: -1.75 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.82 Total: -4.87 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.36 Total: -42.31 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.51 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.12 Total: -5.48 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.92 -6.71 -40.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602564083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.218 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds