Wall clock time and date at job start Tue Mar 31 2020 09:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46686 * 2 1 4 4 C 1.53001 * 109.46889 * 119.99919 * 2 1 3 5 5 C 1.50697 * 109.47243 * 295.00161 * 4 2 1 6 6 H 1.08004 * 120.00053 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00163 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00055 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 119.99819 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.46980 * 90.00124 * 9 7 5 11 11 H 1.48496 * 109.46842 * 209.99620 * 9 7 5 12 12 H 1.48498 * 109.46847 * 330.00047 * 9 7 5 13 13 C 1.52997 * 109.46990 * 239.99929 * 2 1 3 14 14 N 1.46903 * 109.47007 * 65.00109 * 13 2 1 15 15 C 1.46904 * 110.99616 * 179.97438 * 14 13 2 16 16 H 1.08996 * 110.54201 * 36.16334 * 15 14 13 17 17 C 1.54784 * 110.42543 * 158.89654 * 15 14 13 18 18 C 1.54480 * 101.69261 * 143.70892 * 17 15 14 19 19 N 1.46764 * 105.47241 * 334.38904 * 18 17 15 20 20 C 1.46503 * 124.34698 * 196.99555 * 19 18 17 21 21 C 1.53003 * 109.47229 * 269.99650 * 20 19 18 22 22 F 1.39905 * 109.46658 * 60.00051 * 21 20 19 23 23 F 1.39898 * 109.47275 * 180.02562 * 21 20 19 24 24 F 1.39901 * 109.47322 * 300.00483 * 21 20 19 25 25 C 1.34420 * 111.30051 * 17.01779 * 19 18 17 26 26 O 1.21283 * 124.93917 * 179.55324 * 25 19 18 27 27 H 1.08993 * 109.47348 * 300.00129 * 1 2 3 28 28 H 1.08996 * 109.47196 * 59.99897 * 1 2 3 29 29 H 1.09004 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47157 * 55.00056 * 4 2 1 31 31 H 1.08995 * 109.46824 * 175.00259 * 4 2 1 32 32 H 0.97006 * 119.99941 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47343 * 305.00104 * 13 2 1 34 34 H 1.08994 * 109.46906 * 184.99916 * 13 2 1 35 35 H 1.00897 * 111.00162 * 56.04842 * 14 13 2 36 36 H 1.08997 * 111.17051 * 25.53839 * 17 15 14 37 37 H 1.09008 * 110.86851 * 261.74280 * 17 15 14 38 38 H 1.09003 * 110.24569 * 215.39240 * 18 17 15 39 39 H 1.09004 * 110.32163 * 93.43121 * 18 17 15 40 40 H 1.08990 * 109.47236 * 30.00239 * 20 19 18 41 41 H 1.09000 * 109.46950 * 150.00087 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0806 0.9746 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 1.6456 0.2778 4.7993 9 14 2.9648 -1.9876 3.9027 10 1 4.4179 -1.6830 3.8785 11 1 2.6176 -2.6417 5.1899 12 1 2.6311 -2.8987 2.7785 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0375 -2.4456 15 6 2.1258 -0.6266 -3.6671 16 1 2.0704 -1.7098 -3.5597 17 6 1.3029 -0.1575 -4.8913 18 6 2.3803 -0.1220 -5.9978 19 7 3.6541 0.0806 -5.2975 20 6 4.8904 0.5283 -5.9436 21 6 5.6820 -0.6881 -6.4283 22 9 4.9114 -1.4104 -7.3458 23 9 6.8628 -0.2606 -7.0447 24 9 5.9955 -1.5055 -5.3371 25 6 3.5407 -0.1978 -3.9874 26 8 4.4430 -0.1215 -3.1804 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.6054 -1.7197 1.2952 31 1 3.1263 -0.7994 1.2056 32 1 1.8928 -0.0452 5.6800 33 1 1.6054 -1.7198 -1.2952 34 1 3.1263 -0.7994 -1.2056 35 1 1.9882 0.9873 -2.3967 36 1 0.8810 0.8337 -4.7257 37 1 0.5202 -0.8772 -5.1319 38 1 2.1907 0.7047 -6.6825 39 1 2.3951 -1.0662 -6.5422 40 1 4.6461 1.1651 -6.7937 41 1 5.4907 1.0910 -5.2287 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602564086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:19 Heat of formation + Delta-G solvation = -194.325368 kcal Electronic energy + Delta-G solvation = -26101.156246 eV Core-core repulsion = 21793.608862 eV Total energy + Delta-G solvation = -4307.547384 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.42860 -47.98658 -47.87848 -40.92634 -36.85351 -36.80085 -34.53470 -32.57090 -31.46469 -28.76228 -27.72705 -26.78132 -24.78236 -23.92043 -22.08575 -21.94696 -20.26804 -19.12408 -18.88539 -18.79152 -18.12133 -17.20179 -16.66432 -16.46714 -15.92243 -14.95246 -14.84059 -14.69538 -14.53172 -14.36285 -14.11649 -14.06524 -14.04825 -13.94962 -13.85477 -13.63399 -13.18552 -13.04532 -12.74734 -12.41651 -12.30147 -11.95189 -11.76299 -11.66272 -11.37028 -10.91759 -10.76566 -10.44602 -10.34398 -9.87675 -9.62032 -9.43450 -9.37924 -9.01724 -8.46721 -8.30833 -5.97696 -3.94287 1.98695 2.20150 2.54447 3.36537 3.40216 3.43410 3.47893 3.54274 3.85795 3.90521 4.15496 4.22689 4.51786 4.52934 4.64748 4.73491 4.75515 5.01245 5.12268 5.36366 5.55025 5.60218 5.66856 5.81846 5.86047 6.08500 6.29016 6.43929 6.50189 6.59025 6.82976 7.02513 7.07746 7.19320 7.30146 7.39246 7.54257 7.74381 7.87440 8.61762 9.07895 9.65635 11.15739 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.003016 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.870632 B = 9280.667315 C =10128.483328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 H 0.059 0.941 4 C -0.009 4.009 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.053 3.947 14 N -0.655 5.655 15 C 0.060 3.940 16 H 0.117 0.883 17 C -0.118 4.118 18 C 0.099 3.901 19 N -0.623 5.623 20 C 0.087 3.913 21 C 0.431 3.569 22 F -0.184 7.184 23 F -0.182 7.182 24 F -0.174 7.174 25 C 0.487 3.513 26 O -0.501 6.501 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.016 0.984 31 H 0.009 0.991 32 H 0.262 0.738 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.344 0.656 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.125 0.875 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.603 -0.378 -29.449 29.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.091 4.091 3 H 0.078 0.922 4 C -0.047 4.047 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.075 4.075 14 N -0.284 5.284 15 C -0.054 4.054 16 H 0.135 0.865 17 C -0.156 4.156 18 C -0.023 4.023 19 N -0.360 5.360 20 C -0.039 4.039 21 C 0.375 3.625 22 F -0.165 7.165 23 F -0.164 7.164 24 F -0.156 7.156 25 C 0.273 3.727 26 O -0.373 6.373 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.162 0.838 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.143 0.857 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.526 -0.633 -28.832 28.949 hybrid contribution 1.835 -0.879 0.048 2.035 sum 4.361 -1.512 -28.783 29.151 Atomic orbital electron populations 1.21612 0.95261 1.00652 1.00667 1.20993 0.96221 0.99075 0.92857 0.92219 1.19607 0.95553 0.96188 0.93369 1.21128 1.35241 1.09467 0.89096 0.90836 1.25020 0.95691 0.96905 0.95961 1.69917 1.47354 1.39306 0.97991 0.86811 0.80702 0.84555 0.77415 1.20401 1.21502 1.19047 1.22360 0.98767 0.97371 0.89038 1.60871 1.61032 1.05995 1.00537 1.22460 0.88569 1.01545 0.92844 0.86504 1.22688 0.96805 1.04378 0.91737 1.22315 0.81608 1.02642 0.95747 1.48237 1.09683 1.68445 1.09601 1.22460 0.87182 0.92232 1.02004 1.21361 0.78749 0.86701 0.75654 1.93178 1.75013 1.80391 1.67956 1.93196 1.49777 1.89714 1.83664 1.93259 1.93230 1.75079 1.53984 1.22527 0.92526 0.76286 0.81399 1.90805 1.44807 1.50954 1.50756 0.92204 0.93771 0.94160 0.96595 0.97236 0.92868 0.91361 0.93951 0.83803 0.88850 0.88450 0.89766 0.90453 0.85738 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.89 37.16 0.33 -2.00 16 2 C -0.07 -1.44 2.48 -90.62 -0.22 -1.67 16 3 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.01 -0.23 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.70 8.96 -34.44 -0.31 -15.00 16 6 H 0.07 2.25 7.30 -52.48 -0.38 1.87 16 7 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 8 N -0.91 -28.41 13.96 55.43 0.77 -27.63 16 9 Si 0.88 22.40 27.47 -169.99 -4.67 17.73 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 12 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 13 C 0.05 0.88 4.88 -3.82 -0.02 0.86 16 14 N -0.65 -8.50 5.75 -106.65 -0.61 -9.11 16 15 C 0.06 0.62 3.24 -67.64 -0.22 0.40 16 16 H 0.12 1.21 7.88 -51.93 -0.41 0.80 16 17 C -0.12 -0.74 6.89 -25.01 -0.17 -0.91 16 18 C 0.10 0.52 7.22 -3.12 -0.02 0.50 16 19 N -0.62 -5.23 2.81 -172.41 -0.48 -5.71 16 20 C 0.09 0.60 5.91 -4.04 -0.02 0.58 16 21 C 0.43 3.86 3.29 37.16 0.12 3.98 16 22 F -0.18 -1.62 17.08 2.25 0.04 -1.58 16 23 F -0.18 -1.63 17.32 2.25 0.04 -1.59 16 24 F -0.17 -2.17 16.95 2.25 0.04 -2.13 16 25 C 0.49 5.88 7.08 -10.86 -0.08 5.80 16 26 O -0.50 -8.31 16.52 5.55 0.09 -8.21 16 27 H 0.06 1.26 6.95 -51.93 -0.36 0.89 16 28 H 0.04 0.72 7.75 -51.93 -0.40 0.31 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 31 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 34 H 0.04 0.78 7.12 -51.93 -0.37 0.41 16 35 H 0.34 4.51 8.49 -39.29 -0.33 4.18 16 36 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 37 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.08 0.37 8.12 -51.93 -0.42 -0.05 16 40 H 0.12 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.13 0.93 7.93 -51.93 -0.41 0.52 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -34.34 347.95 -6.33 -40.67 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.98 Total: -1.72 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -0.81 Total: -5.96 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -0.32 Total: -42.45 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.12 Total: -5.30 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.73 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.34 -6.33 -40.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602564086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.653 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds