Wall clock time and date at job start Tue Mar 31 2020 09:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47547 * 2 1 4 4 C 1.53003 * 109.47182 * 240.00803 * 2 1 3 5 5 C 1.50694 * 109.47429 * 64.99406 * 4 2 1 6 6 H 1.08001 * 120.00150 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00336 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00126 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00199 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47209 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47198 * 120.00184 * 9 7 5 12 12 H 1.48502 * 109.47056 * 240.00076 * 9 7 5 13 13 C 1.52997 * 109.47651 * 120.00728 * 2 1 3 14 14 N 1.46894 * 109.47476 * 185.32601 * 13 2 1 15 15 C 1.48235 * 111.00572 * 75.52576 * 14 13 2 16 16 C 1.51300 * 104.77127 * 145.28762 * 15 14 13 17 17 O 1.21286 * 125.75226 * 163.25831 * 16 15 14 18 18 N 1.34855 * 108.50090 * 343.23893 * 16 15 14 19 19 C 1.46500 * 125.20425 * 179.60399 * 18 16 15 20 20 C 1.53001 * 109.46966 * 89.97635 * 19 18 16 21 21 C 1.53007 * 109.47032 * 179.97438 * 20 19 18 22 22 F 1.39897 * 109.46864 * 60.00692 * 21 20 19 23 23 F 1.39900 * 109.46755 * 180.02562 * 21 20 19 24 24 F 1.39892 * 109.47300 * 300.00038 * 21 20 19 25 25 C 1.46799 * 109.58886 * 359.57118 * 18 16 15 26 26 H 1.09000 * 109.47167 * 294.56932 * 1 2 3 27 27 H 1.08999 * 109.47462 * 54.57237 * 1 2 3 28 28 H 1.09004 * 109.46989 * 174.57134 * 1 2 3 29 29 H 1.08999 * 109.47425 * 185.00275 * 4 2 1 30 30 H 1.09001 * 109.46832 * 304.99976 * 4 2 1 31 31 H 0.97001 * 120.00856 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.47077 * 65.31754 * 13 2 1 33 33 H 1.09004 * 109.46561 * 305.32404 * 13 2 1 34 34 H 1.09006 * 110.37795 * 264.11352 * 15 14 13 35 35 H 1.09000 * 110.37471 * 26.46466 * 15 14 13 36 36 H 1.09000 * 109.47277 * 209.97159 * 19 18 16 37 37 H 1.09000 * 109.47793 * 329.97953 * 19 18 16 38 38 H 1.08994 * 109.47137 * 299.99790 * 20 19 18 39 39 H 1.09005 * 109.46802 * 60.00035 * 20 19 18 40 40 H 1.08997 * 110.12095 * 258.42601 * 25 18 16 41 41 H 1.08999 * 110.12042 * 136.76566 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6412 0.0572 -2.4766 6 1 1.0804 0.9747 -2.3757 7 6 1.9922 -0.4019 -3.7284 8 7 2.6746 -1.5194 -3.8515 9 14 1.4985 0.5633 -5.2496 10 1 0.7419 1.7748 -4.8433 11 1 2.7167 0.9672 -5.9966 12 1 0.6438 -0.2852 -6.1184 13 6 2.0400 -0.7214 1.2491 14 7 3.5033 -0.6110 1.3151 15 6 3.9149 0.7456 1.7480 16 6 5.1600 0.5243 2.5787 17 8 5.9691 1.3749 2.8833 18 7 5.2183 -0.7781 2.9237 19 6 6.2805 -1.3932 3.7234 20 6 5.9095 -1.3209 5.2060 21 6 7.0186 -1.9639 6.0413 22 9 8.2197 -1.2794 5.8273 23 9 6.6790 -1.8983 7.3968 24 9 7.1707 -3.3022 5.6633 25 6 4.0541 -1.4849 2.3760 26 1 -0.3633 0.4273 0.9346 27 1 -0.3634 0.5957 -0.8374 28 1 -0.3633 -1.0231 -0.0972 29 1 3.1262 -0.7994 -1.2057 30 1 1.6053 -1.7196 -1.2954 31 1 2.9219 -1.8423 -4.7321 32 1 1.7566 -1.7729 1.2026 33 1 1.6009 -0.2656 2.1366 34 1 4.1418 1.3678 0.8822 35 1 3.1324 1.2049 2.3520 36 1 6.3994 -2.4359 3.4292 37 1 7.2162 -0.8596 3.5567 38 1 5.7906 -0.2782 5.5004 39 1 4.9737 -1.8545 5.3728 40 1 3.3095 -1.6420 3.1564 41 1 4.3612 -2.4410 1.9522 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602674188.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:46 Heat of formation + Delta-G solvation = -183.775560 kcal Electronic energy + Delta-G solvation = -25741.912915 eV Core-core repulsion = 21434.823005 eV Total energy + Delta-G solvation = -4307.089910 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.45947 -47.96130 -47.92567 -40.75810 -37.51971 -36.10058 -34.55879 -32.44050 -31.42515 -28.56528 -27.13898 -26.72909 -25.23962 -23.21491 -22.82514 -22.12032 -20.21807 -19.03584 -18.90680 -18.60528 -17.87731 -16.74004 -16.70543 -16.12103 -15.77417 -15.03304 -14.85100 -14.79592 -14.48686 -14.36442 -14.21043 -14.12791 -14.06256 -13.96424 -13.88661 -13.69172 -13.26826 -13.01794 -12.51135 -12.39767 -12.25524 -12.04247 -11.79426 -11.56125 -11.42939 -10.93394 -10.88822 -10.38569 -10.31122 -9.98925 -9.79368 -9.44230 -9.10752 -8.92123 -8.39905 -8.24818 -5.93770 -3.94518 2.19300 2.37297 2.71169 3.33365 3.41495 3.44381 3.50171 3.63132 3.65879 3.84267 4.17365 4.44337 4.48465 4.50329 4.82339 4.91615 5.00624 5.15504 5.22776 5.32838 5.38214 5.42509 5.57533 5.72019 5.88812 6.00486 6.10482 6.22650 6.28430 6.48213 6.80943 6.85761 6.95610 7.10006 7.22530 7.78030 7.93986 7.97101 8.11508 8.50232 9.13085 9.68489 11.17341 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.025370 B = 0.002655 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.389631 B =10545.123958 C =10695.475027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 H 0.058 0.942 4 C 0.034 3.966 5 C -0.514 4.514 6 H 0.053 0.947 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.885 3.115 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.053 3.947 14 N -0.489 5.489 15 C 0.004 3.996 16 C 0.522 3.478 17 O -0.521 6.521 18 N -0.627 5.627 19 C 0.133 3.867 20 C -0.188 4.188 21 C 0.459 3.541 22 F -0.180 7.180 23 F -0.184 7.184 24 F -0.182 7.182 25 C 0.254 3.746 26 H 0.029 0.971 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.032 0.968 30 H 0.011 0.989 31 H 0.258 0.742 32 H 0.079 0.921 33 H 0.031 0.969 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.051 0.949 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 -2.358 20.483 21.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 H 0.076 0.924 4 C -0.003 4.003 5 C -0.553 4.553 6 H 0.071 0.929 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.075 4.075 14 N -0.214 5.214 15 C -0.127 4.127 16 C 0.310 3.690 17 O -0.396 6.396 18 N -0.362 5.362 19 C 0.010 3.990 20 C -0.228 4.228 21 C 0.404 3.596 22 F -0.162 7.162 23 F -0.165 7.165 24 F -0.164 7.164 25 C 0.042 3.958 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.029 0.971 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.049 0.951 34 H 0.142 0.858 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.069 0.931 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.019 -2.205 20.025 20.762 hybrid contribution -0.481 0.422 0.008 0.640 sum 4.538 -1.783 20.033 20.618 Atomic orbital electron populations 1.21695 0.95991 1.01457 0.99841 1.21204 0.94533 0.99331 0.95080 0.92359 1.19079 0.97376 0.94588 0.89276 1.21317 1.34462 1.08207 0.91295 0.92882 1.24985 0.95412 0.95062 0.98945 1.69973 1.39139 1.21181 1.23100 0.86651 0.78234 0.80150 0.83620 1.19883 1.21146 1.21213 1.22646 0.84019 1.02139 0.98696 1.65744 1.13548 1.03023 1.39104 1.23184 0.95191 0.93981 1.00347 1.21262 0.87148 0.81704 0.78910 1.90741 1.44440 1.47312 1.57085 1.48476 1.24729 1.10088 1.52926 1.21171 0.90831 1.00531 0.86504 1.23356 0.97525 1.04935 0.96937 1.20373 0.83457 0.76805 0.78982 1.93215 1.48951 1.79469 1.94549 1.93200 1.92168 1.96173 1.34978 1.93200 1.96194 1.35962 1.91005 1.23008 0.85757 0.95663 0.91391 0.95232 0.91774 0.93336 0.94938 0.97097 0.93258 0.90255 0.95071 0.85814 0.89669 0.88523 0.88454 0.86821 0.86858 0.93145 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.91 37.15 0.33 -1.88 16 2 C -0.08 -1.50 2.40 -90.62 -0.22 -1.72 16 3 H 0.06 1.09 7.60 -51.93 -0.39 0.69 16 4 C 0.03 0.81 4.39 -27.88 -0.12 0.69 16 5 C -0.51 -13.90 8.47 -34.44 -0.29 -14.19 16 6 H 0.05 1.40 7.06 -52.49 -0.37 1.03 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.05 0.75 4.04 -3.83 -0.02 0.73 16 14 N -0.49 -6.95 4.88 -237.23 -1.16 -8.10 16 15 C 0.00 0.05 6.01 -3.94 -0.02 0.02 16 16 C 0.52 7.30 8.19 -10.66 -0.09 7.21 16 17 O -0.52 -8.84 17.74 5.55 0.10 -8.75 16 18 N -0.63 -7.00 2.97 -176.02 -0.52 -7.52 16 19 C 0.13 1.16 5.79 -4.04 -0.02 1.14 16 20 C -0.19 -1.34 5.58 -26.73 -0.15 -1.49 16 21 C 0.46 3.73 3.16 37.16 0.12 3.84 16 22 F -0.18 -1.73 16.80 2.25 0.04 -1.69 16 23 F -0.18 -1.63 17.32 2.25 0.04 -1.59 16 24 F -0.18 -1.55 16.80 2.25 0.04 -1.52 16 25 C 0.25 2.74 7.22 -61.69 -0.45 2.29 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 1.18 7.12 -51.93 -0.37 0.81 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.85 7.63 -51.93 -0.40 0.46 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 33 H 0.03 0.37 7.67 -51.93 -0.40 -0.03 16 34 H 0.12 1.84 8.14 -51.93 -0.42 1.41 16 35 H 0.09 0.99 7.51 -51.93 -0.39 0.60 16 36 H 0.10 0.69 7.80 -51.93 -0.41 0.28 16 37 H 0.10 0.96 7.68 -51.93 -0.40 0.56 16 38 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.44 7.79 -51.93 -0.40 0.03 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -31.69 351.54 -7.52 -39.21 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -6.04 Total: -4.18 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.03 Total: -1.85 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -0.94 Total: -41.33 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.10 Total: -8.75 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.11 Total: -4.80 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.69 -7.52 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602674188.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.561 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds