Wall clock time and date at job start Tue Mar 31 2020 09:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47547 * 2 1 4 4 C 1.53003 * 109.47182 * 240.00803 * 2 1 3 5 5 C 1.50694 * 109.47429 * 64.99406 * 4 2 1 6 6 H 1.08001 * 120.00150 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00336 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00126 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00199 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47209 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47198 * 120.00184 * 9 7 5 12 12 H 1.48502 * 109.47056 * 240.00076 * 9 7 5 13 13 C 1.52997 * 109.47651 * 120.00728 * 2 1 3 14 14 N 1.46894 * 109.47476 * 185.32601 * 13 2 1 15 15 C 1.48235 * 111.00572 * 75.52576 * 14 13 2 16 16 C 1.51300 * 104.77127 * 145.28762 * 15 14 13 17 17 O 1.21286 * 125.75226 * 163.25831 * 16 15 14 18 18 N 1.34855 * 108.50090 * 343.23893 * 16 15 14 19 19 C 1.46500 * 125.20425 * 179.60399 * 18 16 15 20 20 C 1.53001 * 109.46966 * 89.97635 * 19 18 16 21 21 C 1.53007 * 109.47032 * 179.97438 * 20 19 18 22 22 F 1.39897 * 109.46864 * 60.00692 * 21 20 19 23 23 F 1.39900 * 109.46755 * 180.02562 * 21 20 19 24 24 F 1.39892 * 109.47300 * 300.00038 * 21 20 19 25 25 C 1.46799 * 109.58886 * 359.57118 * 18 16 15 26 26 H 1.09000 * 109.47167 * 294.56932 * 1 2 3 27 27 H 1.08999 * 109.47462 * 54.57237 * 1 2 3 28 28 H 1.09004 * 109.46989 * 174.57134 * 1 2 3 29 29 H 1.08999 * 109.47425 * 185.00275 * 4 2 1 30 30 H 1.09001 * 109.46832 * 304.99976 * 4 2 1 31 31 H 0.97001 * 120.00856 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.47077 * 65.31754 * 13 2 1 33 33 H 1.09004 * 109.46561 * 305.32404 * 13 2 1 34 34 H 1.09006 * 110.37795 * 264.11352 * 15 14 13 35 35 H 1.09000 * 110.37471 * 26.46466 * 15 14 13 36 36 H 1.09000 * 109.47277 * 209.97159 * 19 18 16 37 37 H 1.09000 * 109.47793 * 329.97953 * 19 18 16 38 38 H 1.08994 * 109.47137 * 299.99790 * 20 19 18 39 39 H 1.09005 * 109.46802 * 60.00035 * 20 19 18 40 40 H 1.08997 * 110.12095 * 258.42601 * 25 18 16 41 41 H 1.08999 * 110.12042 * 136.76566 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6412 0.0572 -2.4766 6 1 1.0804 0.9747 -2.3757 7 6 1.9922 -0.4019 -3.7284 8 7 2.6746 -1.5194 -3.8515 9 14 1.4985 0.5633 -5.2496 10 1 0.7419 1.7748 -4.8433 11 1 2.7167 0.9672 -5.9966 12 1 0.6438 -0.2852 -6.1184 13 6 2.0400 -0.7214 1.2491 14 7 3.5033 -0.6110 1.3151 15 6 3.9149 0.7456 1.7480 16 6 5.1600 0.5243 2.5787 17 8 5.9691 1.3749 2.8833 18 7 5.2183 -0.7781 2.9237 19 6 6.2805 -1.3932 3.7234 20 6 5.9095 -1.3209 5.2060 21 6 7.0186 -1.9639 6.0413 22 9 8.2197 -1.2794 5.8273 23 9 6.6790 -1.8983 7.3968 24 9 7.1707 -3.3022 5.6633 25 6 4.0541 -1.4849 2.3760 26 1 -0.3633 0.4273 0.9346 27 1 -0.3634 0.5957 -0.8374 28 1 -0.3633 -1.0231 -0.0972 29 1 3.1262 -0.7994 -1.2057 30 1 1.6053 -1.7196 -1.2954 31 1 2.9219 -1.8423 -4.7321 32 1 1.7566 -1.7729 1.2026 33 1 1.6009 -0.2656 2.1366 34 1 4.1418 1.3678 0.8822 35 1 3.1324 1.2049 2.3520 36 1 6.3994 -2.4359 3.4292 37 1 7.2162 -0.8596 3.5567 38 1 5.7906 -0.2782 5.5004 39 1 4.9737 -1.8545 5.3728 40 1 3.3095 -1.6420 3.1564 41 1 4.3612 -2.4410 1.9522 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602674188.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:46 Heat of formation + Delta-G solvation = -203.550817 kcal Electronic energy + Delta-G solvation = -25742.770434 eV Core-core repulsion = 21434.823005 eV Total energy + Delta-G solvation = -4307.947430 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.13523 -48.64081 -48.61238 -41.76622 -38.70203 -37.22128 -35.80334 -34.20459 -32.51239 -29.64407 -28.90306 -27.69447 -26.25032 -24.90069 -23.61065 -23.25340 -21.23752 -20.34519 -19.57510 -19.40631 -18.62098 -18.42880 -17.70178 -17.38335 -16.70414 -16.54949 -15.86970 -15.64594 -15.54273 -15.37819 -15.20100 -15.05643 -14.83995 -14.76394 -14.73521 -14.67486 -14.41627 -14.20196 -13.88407 -13.63219 -13.37740 -13.25309 -12.93862 -12.75672 -12.72992 -12.57262 -12.43418 -12.19329 -11.89924 -11.43587 -11.08012 -10.93242 -10.85972 -10.44409 -10.26923 -9.33513 -8.08879 -6.15703 1.30182 1.40966 1.42844 1.45783 1.53750 1.96144 2.46840 2.81868 2.86514 2.96481 3.03428 3.23203 3.25171 3.73101 3.80103 3.96933 4.13477 4.25083 4.29010 4.36813 4.40797 4.49271 4.60121 4.65192 4.73203 4.79480 4.89735 4.99036 5.20394 5.33016 5.45687 5.51580 5.57761 5.72110 5.89818 5.97141 6.06527 6.11888 6.42591 6.91629 7.04173 7.51486 9.02468 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.025370 B = 0.002655 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.389631 B =10545.123958 C =10695.475027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.078 4.078 3 H 0.051 0.949 4 C 0.043 3.957 5 C -0.525 4.525 6 H 0.055 0.945 7 C -0.001 4.001 8 N -0.933 5.933 9 Si 0.949 3.051 10 H -0.263 1.263 11 H -0.285 1.285 12 H -0.281 1.281 13 C 0.063 3.937 14 N -0.522 5.522 15 C 0.008 3.992 16 C 0.518 3.482 17 O -0.560 6.560 18 N -0.618 5.618 19 C 0.128 3.872 20 C -0.175 4.175 21 C 0.461 3.539 22 F -0.192 7.192 23 F -0.187 7.187 24 F -0.183 7.183 25 C 0.256 3.744 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.002 0.998 30 H -0.015 1.015 31 H 0.258 0.742 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.139 0.861 40 H 0.087 0.913 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -2.462 21.934 22.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.097 4.097 3 H 0.070 0.930 4 C 0.006 3.994 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.198 4.198 8 N -0.574 5.574 9 Si 0.776 3.224 10 H -0.187 1.187 11 H -0.211 1.211 12 H -0.207 1.207 13 C -0.065 4.065 14 N -0.248 5.248 15 C -0.122 4.122 16 C 0.306 3.694 17 O -0.438 6.438 18 N -0.352 5.352 19 C 0.005 3.995 20 C -0.215 4.215 21 C 0.407 3.593 22 F -0.173 7.173 23 F -0.168 7.168 24 F -0.165 7.165 25 C 0.044 3.956 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.020 0.980 30 H 0.003 0.997 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.157 0.843 40 H 0.105 0.895 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.657 -2.334 21.492 21.926 hybrid contribution -0.033 0.403 -0.433 0.593 sum 3.623 -1.930 21.059 21.455 Atomic orbital electron populations 1.21620 0.94669 1.01226 1.00967 1.21042 0.95630 0.98594 0.94398 0.93016 1.18898 0.95316 0.93629 0.91534 1.21794 1.33621 1.08299 0.92609 0.92642 1.25834 0.95647 0.96061 1.02267 1.70101 1.40664 1.22893 1.23749 0.85631 0.77878 0.79082 0.79845 1.18735 1.21113 1.20743 1.22454 0.84191 1.02107 0.97714 1.65603 1.13821 1.03806 1.41576 1.23085 0.95753 0.93732 0.99676 1.21339 0.86887 0.82313 0.78835 1.90717 1.45711 1.48611 1.58771 1.48516 1.25180 1.09161 1.52311 1.21327 0.89569 1.01144 0.87427 1.23252 0.98018 1.05035 0.95158 1.20477 0.83261 0.76668 0.78934 1.93198 1.49812 1.79727 1.94599 1.93194 1.92141 1.96185 1.35318 1.93199 1.96203 1.36092 1.90985 1.23147 0.86079 0.94769 0.91596 0.91315 0.94068 0.93572 0.97961 0.99664 0.93305 0.89741 0.91400 0.88176 0.87374 0.86501 0.90012 0.87194 0.84318 0.89531 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 8.91 71.98 0.64 -3.36 16 2 C -0.08 -2.73 2.40 -10.80 -0.03 -2.76 16 3 H 0.05 1.88 7.60 -2.39 -0.02 1.86 16 4 C 0.04 2.12 4.39 29.85 0.13 2.25 16 5 C -0.52 -28.72 8.47 25.60 0.22 -28.50 16 6 H 0.06 2.94 7.06 -2.91 -0.02 2.92 16 7 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 8 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 9 Si 0.95 44.29 29.54 68.60 2.03 46.32 16 10 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 C 0.06 1.61 4.04 86.30 0.35 1.96 16 14 N -0.52 -13.99 4.88 -904.46 -4.41 -18.40 16 15 C 0.01 0.21 6.01 85.49 0.51 0.72 16 16 C 0.52 14.11 8.19 87.84 0.72 14.83 16 17 O -0.56 -19.17 17.74 -3.05 -0.05 -19.23 16 18 N -0.62 -12.64 2.97 -829.15 -2.46 -15.10 16 19 C 0.13 2.02 5.79 86.38 0.50 2.52 16 20 C -0.18 -2.09 5.58 30.60 0.17 -1.92 16 21 C 0.46 6.75 3.16 71.98 0.23 6.98 16 22 F -0.19 -3.55 16.80 44.97 0.76 -2.80 16 23 F -0.19 -3.01 17.32 44.97 0.78 -2.23 16 24 F -0.18 -2.78 16.80 44.97 0.76 -2.03 16 25 C 0.26 4.77 7.22 170.24 1.23 6.00 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 1.46 7.12 -2.39 -0.02 1.44 16 28 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.00 0.11 7.63 -2.39 -0.02 0.09 16 30 H -0.02 -0.80 8.14 -2.39 -0.02 -0.82 16 31 H 0.26 14.80 8.31 -92.71 -0.77 14.02 16 32 H 0.08 2.09 8.09 -2.38 -0.02 2.08 16 33 H 0.07 1.28 7.67 -2.38 -0.02 1.26 16 34 H 0.10 3.04 8.14 -2.38 -0.02 3.02 16 35 H 0.11 2.24 7.51 -2.39 -0.02 2.23 16 36 H 0.12 1.38 7.80 -2.39 -0.02 1.36 16 37 H 0.08 1.58 7.68 -2.39 -0.02 1.57 16 38 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.14 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.09 1.07 7.79 -2.39 -0.02 1.05 16 41 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -70.53 351.54 3.84 -66.69 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 1.03 Total: 3.75 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 5.14 Total: -0.89 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -6.59 Total: -89.58 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.05 Total: -19.23 kcal Atomic # 9 Polarization: -9.34 SS G_CDS: 2.29 Total: -7.05 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -70.53 3.84 -66.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602674188.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.859 kcal (2) G-P(sol) polarization free energy of solvation -70.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds