Wall clock time and date at job start Tue Mar 31 2020 10:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45202 * 109.47271 * 2 1 4 4 C 1.34890 * 117.00284 * 180.02562 * 3 2 1 5 5 O 1.21621 * 119.99914 * 359.97438 * 4 3 2 6 6 C 1.46493 * 119.99879 * 179.97438 * 4 3 2 7 7 C 1.37997 * 126.25970 * 179.97438 * 6 4 3 8 8 C 1.39798 * 106.96508 * 180.02562 * 7 6 4 9 9 C 1.35487 * 107.84427 * 359.97438 * 8 7 6 10 10 C 1.50700 * 125.50607 * 179.97438 * 9 8 7 11 11 N 1.46897 * 109.47366 * 95.02400 * 10 9 8 12 12 C 1.47899 * 111.00068 * 69.87158 * 11 10 9 13 13 C 1.53997 * 107.05889 * 145.84368 * 12 11 10 14 14 C 1.54593 * 105.13807 * 358.77516 * 13 12 11 15 15 O 1.42904 * 110.72258 * 96.40366 * 14 13 12 16 16 C 1.50705 * 110.72583 * 219.68092 * 14 13 12 17 17 H 1.07993 * 119.99953 * 118.54560 * 16 14 13 18 18 C 1.37878 * 119.99835 * 298.55374 * 16 14 13 19 19 N 1.31514 * 120.00255 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99873 * 179.97438 * 18 16 14 21 21 H 1.48511 * 109.47020 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47273 * 119.99517 * 20 18 16 23 23 H 1.48497 * 109.47130 * 239.99689 * 20 18 16 24 24 C 1.48538 * 111.00123 * 187.27000 * 11 10 9 25 25 N 1.34952 * 108.98538 * 0.24301 * 9 8 7 26 26 H 0.97003 * 125.63815 * 179.74553 * 25 9 8 27 27 H 1.09006 * 109.47054 * 299.99805 * 1 2 3 28 28 H 1.08996 * 109.47447 * 60.00203 * 1 2 3 29 29 H 1.09006 * 109.46943 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47741 * 239.99936 * 2 1 3 31 31 H 1.09006 * 109.47492 * 119.99958 * 2 1 3 32 32 H 1.08001 * 126.51850 * 359.97438 * 7 6 4 33 33 H 1.08002 * 126.08154 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.47393 * 335.02307 * 10 9 8 35 35 H 1.09004 * 109.46904 * 215.02046 * 10 9 8 36 36 H 1.09004 * 109.91646 * 26.49394 * 12 11 10 37 37 H 1.08998 * 109.92144 * 265.19786 * 12 11 10 38 38 H 1.09004 * 110.30998 * 117.69119 * 13 12 11 39 39 H 1.08998 * 110.30811 * 239.85930 * 13 12 11 40 40 H 0.96700 * 114.00523 * 61.45046 * 15 14 13 41 41 H 0.96994 * 120.00103 * 180.02562 * 19 18 16 42 42 H 1.09007 * 110.66246 * 318.71191 * 24 11 10 43 43 H 1.08993 * 110.66671 * 81.67342 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3512 1.5457 -0.0005 5 8 4.0921 0.5812 -0.0005 6 6 3.9111 2.8995 -0.0011 7 6 5.2513 3.2284 -0.0012 8 6 5.3287 4.6243 -0.0013 9 6 4.0640 5.1102 -0.0018 10 6 3.6870 6.5693 -0.0015 11 7 3.4478 7.0136 -1.3811 12 6 2.2098 6.4136 -1.9240 13 6 1.5750 7.4579 -2.8611 14 6 2.5097 8.6871 -2.7879 15 8 3.4373 8.6824 -3.8749 16 6 1.7104 9.9647 -2.7725 17 1 1.7745 10.6315 -1.9255 18 6 0.8973 10.2820 -3.8398 19 7 0.8195 9.4701 -4.8715 20 14 -0.0939 11.8652 -3.8205 21 1 0.1675 12.5974 -2.5552 22 1 0.3031 12.7119 -4.9740 23 1 -1.5407 11.5446 -3.9165 24 6 3.2445 8.4838 -1.4392 25 7 3.1965 4.0765 0.0033 26 1 2.2292 4.1503 0.0076 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 6.0824 2.5387 -0.0005 33 1 6.2354 5.2110 -0.0017 34 1 4.4977 7.1540 0.4331 35 1 2.7809 6.7103 0.5879 36 1 1.5233 6.1787 -1.1106 37 1 2.4497 5.5096 -2.4837 38 1 1.5326 7.0750 -3.8808 39 1 0.5761 7.7209 -2.5131 40 1 3.0218 8.7288 -4.7469 41 1 0.2478 9.6935 -5.6225 42 1 2.6237 8.8195 -0.6084 43 1 4.2019 9.0049 -1.4373 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602696910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:31 Heat of formation + Delta-G solvation = -89.076015 kcal Electronic energy + Delta-G solvation = -25404.067737 eV Core-core repulsion = 21642.941047 eV Total energy + Delta-G solvation = -3761.126690 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.49904 -40.04001 -38.31186 -36.69346 -34.87077 -32.16012 -32.14174 -31.24584 -31.10616 -28.87564 -28.05573 -25.96930 -24.35253 -23.49659 -22.18168 -20.68088 -20.57307 -19.91394 -19.50904 -18.55026 -17.12310 -16.89631 -16.76508 -15.61909 -15.31391 -14.96754 -14.74449 -14.36748 -14.02669 -13.91153 -13.60486 -13.46386 -13.32601 -13.17741 -12.65267 -12.57545 -12.36941 -12.18900 -12.11760 -11.90200 -11.42993 -11.32717 -11.24371 -11.02320 -10.79052 -10.78919 -10.72838 -10.46791 -10.41681 -9.86000 -9.23145 -9.02223 -8.64663 -8.28168 -8.09380 -7.84530 -6.25120 -4.33777 1.16956 2.42915 2.62694 3.09944 3.13294 3.17759 3.27047 3.30432 4.25430 4.60793 4.61365 4.63652 4.73353 4.82841 4.96724 5.03970 5.13618 5.30828 5.37101 5.46863 5.52910 5.59389 5.65582 5.67278 5.81686 5.90545 5.99702 6.05869 6.13341 6.27201 6.34610 6.50823 6.74765 6.81025 6.90819 6.95979 7.28724 7.33068 7.44461 7.45185 7.55434 7.63946 7.77016 8.12684 8.69208 9.35575 9.51579 10.81863 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.003074 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.008312 B = 9105.372790 C =10049.929885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 O -0.364 6.364 4 C 0.541 3.459 5 O -0.507 6.507 6 C -0.059 4.059 7 C -0.089 4.089 8 C -0.198 4.198 9 C 0.094 3.906 10 C 0.101 3.899 11 N -0.506 5.506 12 C 0.035 3.965 13 C -0.128 4.128 14 C 0.258 3.742 15 O -0.579 6.579 16 C -0.538 4.538 17 H 0.062 0.938 18 C 0.071 3.929 19 N -0.893 5.893 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.283 1.283 24 C 0.052 3.948 25 N -0.521 5.521 26 H 0.420 0.580 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.100 0.900 35 H 0.042 0.958 36 H 0.023 0.977 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.377 0.623 41 H 0.266 0.734 42 H 0.047 0.953 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.651 -13.595 10.393 17.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.008 4.008 3 O -0.282 6.282 4 C 0.387 3.613 5 O -0.396 6.396 6 C -0.169 4.169 7 C -0.115 4.115 8 C -0.222 4.222 9 C -0.026 4.026 10 C -0.028 4.028 11 N -0.230 5.230 12 C -0.092 4.092 13 C -0.167 4.167 14 C 0.217 3.783 15 O -0.387 6.387 16 C -0.577 4.577 17 H 0.080 0.920 18 C -0.132 4.132 19 N -0.532 5.532 20 Si 0.726 3.274 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.210 1.210 24 C -0.074 4.074 25 N -0.116 5.116 26 H 0.258 0.742 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.118 0.882 35 H 0.060 0.940 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.227 0.773 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.462 -14.182 10.424 17.662 hybrid contribution -2.278 0.848 -0.079 2.432 sum -0.817 -13.334 10.345 16.896 Atomic orbital electron populations 1.21823 0.92516 1.03057 1.03684 1.23022 0.95333 0.79760 1.02712 1.86576 1.24062 1.32827 1.84747 1.19805 0.80349 0.88216 0.72933 1.90879 1.60366 1.41021 1.47318 1.19168 0.91732 0.82938 1.23069 1.21321 0.93219 0.95755 1.01253 1.20674 0.96370 0.93645 1.11519 1.20507 0.89787 0.89704 1.02624 1.20928 1.01300 0.88374 0.92149 1.64849 1.35127 1.07498 1.15520 1.22973 0.89611 0.99131 0.97534 1.22935 0.99524 0.95818 0.98438 1.19311 0.84479 0.91479 0.83015 1.86150 1.37627 1.96985 1.17897 1.21626 1.25448 1.06198 1.04398 0.92024 1.25006 0.96033 0.96928 0.95193 1.69743 1.39539 1.36515 1.07447 0.86433 0.79535 0.83141 0.78247 1.19681 1.20761 1.20955 1.23231 1.00254 0.85651 0.98300 1.41855 1.09302 1.04873 1.55590 0.74231 0.91486 0.91290 0.90112 0.91046 0.91156 0.83311 0.83409 0.88184 0.93988 0.95893 0.91956 0.91409 0.92017 0.77346 0.92386 0.93464 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.29 37.15 0.38 -0.67 16 2 C 0.07 0.61 6.20 37.15 0.23 0.84 16 3 O -0.36 -4.42 10.23 -41.01 -0.42 -4.84 16 4 C 0.54 7.54 7.93 34.06 0.27 7.81 16 5 O -0.51 -7.99 16.68 -19.36 -0.32 -8.31 16 6 C -0.06 -0.81 7.10 -81.99 -0.58 -1.39 16 7 C -0.09 -1.19 10.66 -39.09 -0.42 -1.60 16 8 C -0.20 -2.62 10.71 -39.98 -0.43 -3.05 16 9 C 0.09 1.29 6.14 -82.20 -0.50 0.78 16 10 C 0.10 1.43 5.29 -4.98 -0.03 1.40 16 11 N -0.51 -9.17 5.26 -231.89 -1.22 -10.39 16 12 C 0.04 0.65 6.07 -2.75 -0.02 0.64 16 13 C -0.13 -2.86 5.26 -25.37 -0.13 -2.99 16 14 C 0.26 6.18 0.95 -89.91 -0.09 6.09 16 15 O -0.58 -14.94 13.09 -35.23 -0.46 -15.40 16 16 C -0.54 -13.93 8.14 -34.44 -0.28 -14.22 16 17 H 0.06 1.58 7.78 -52.49 -0.41 1.17 16 18 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 19 N -0.89 -23.38 11.02 55.43 0.61 -22.77 16 20 Si 0.90 20.14 29.54 -169.99 -5.02 15.11 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C 0.05 1.07 5.67 -1.90 -0.01 1.06 16 25 N -0.52 -6.74 5.96 -5.82 -0.03 -6.78 16 26 H 0.42 4.82 8.96 -40.82 -0.37 4.46 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.10 1.26 8.11 -51.93 -0.42 0.84 16 35 H 0.04 0.55 7.82 -51.93 -0.41 0.15 16 36 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 1.62 7.99 -51.93 -0.41 1.20 16 39 H 0.06 1.43 7.84 -51.93 -0.41 1.02 16 40 H 0.38 9.86 7.48 45.56 0.34 10.21 16 41 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 42 H 0.05 0.91 7.92 -51.93 -0.41 0.50 16 43 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 361.67 15.07 5.45 5.45 Total: -1.00 -29.17 361.67 -8.94 -38.11 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -5.83 Total: 13.39 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.70 Total: -3.57 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: -0.64 Total: -39.94 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -1.20 Total: -28.55 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.17 -8.94 -38.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602696910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.968 kcal (2) G-P(sol) polarization free energy of solvation -29.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds