Wall clock time and date at job start Tue Mar 31 2020 10:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.45200 * 109.46821 * 2 1 4 4 C 1.34892 * 117.00126 * 179.97438 * 3 2 1 5 5 O 1.21623 * 119.99698 * 0.02562 * 4 3 2 6 6 C 1.46490 * 120.00368 * 180.02562 * 4 3 2 7 7 C 1.37994 * 126.26457 * 180.02562 * 6 4 3 8 8 C 1.39794 * 106.96802 * 179.97438 * 7 6 4 9 9 C 1.35491 * 107.84282 * 0.02562 * 8 7 6 10 10 C 1.50706 * 125.50388 * 180.02562 * 9 8 7 11 11 N 1.46900 * 109.46840 * 95.02316 * 10 9 8 12 12 C 1.48720 * 111.01831 * 54.48842 * 11 10 9 13 13 C 1.54381 * 104.51692 * 158.96284 * 12 11 10 14 14 C 1.54257 * 105.14978 * 336.27274 * 13 12 11 15 15 O 1.42910 * 110.32027 * 241.04997 * 14 13 12 16 16 C 1.50697 * 110.32628 * 118.84329 * 14 13 12 17 17 H 1.07995 * 120.00073 * 241.44522 * 16 14 13 18 18 C 1.37883 * 119.99811 * 61.45328 * 16 14 13 19 19 N 1.31514 * 119.99933 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 119.99722 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46935 * 90.00162 * 20 18 16 22 22 H 1.48500 * 109.47103 * 209.99421 * 20 18 16 23 23 H 1.48498 * 109.47343 * 330.00155 * 20 18 16 24 24 C 1.48567 * 110.99718 * 169.99824 * 11 10 9 25 25 N 1.34953 * 108.98504 * 0.25927 * 9 8 7 26 26 H 0.97004 * 125.63527 * 179.73822 * 25 9 8 27 27 H 1.08998 * 109.46732 * 59.99933 * 1 2 3 28 28 H 1.09001 * 109.46497 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47196 * 300.00161 * 1 2 3 30 30 H 1.08993 * 109.47175 * 240.00382 * 2 1 3 31 31 H 1.08991 * 109.46806 * 119.99699 * 2 1 3 32 32 H 1.07998 * 126.51178 * 359.95488 * 7 6 4 33 33 H 1.08002 * 126.07848 * 179.97438 * 8 7 6 34 34 H 1.09003 * 109.47369 * 335.02127 * 10 9 8 35 35 H 1.09000 * 109.46724 * 215.02024 * 10 9 8 36 36 H 1.09004 * 110.38960 * 40.24251 * 12 11 10 37 37 H 1.08996 * 110.50963 * 277.74694 * 12 11 10 38 38 H 1.09002 * 110.32526 * 217.32092 * 13 12 11 39 39 H 1.08998 * 110.32190 * 95.21733 * 13 12 11 40 40 H 0.96699 * 114.00154 * 298.54485 * 15 14 13 41 41 H 0.97002 * 119.99478 * 180.02562 * 19 18 16 42 42 H 1.08999 * 110.41133 * 82.17552 * 24 11 10 43 43 H 1.09001 * 110.41003 * 319.73948 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3513 1.5458 0.0005 5 8 4.0922 0.5813 0.0005 6 6 3.9112 2.8995 0.0011 7 6 5.2513 3.2285 0.0012 8 6 5.3288 4.6243 0.0013 9 6 4.0640 5.1103 0.0018 10 6 3.6870 6.5694 0.0015 11 7 3.4463 7.0126 -1.3783 12 6 2.4364 6.1499 -2.0471 13 6 1.9016 7.0114 -3.2113 14 6 2.1699 8.4706 -2.7892 15 8 0.9407 9.1931 -2.6923 16 6 3.0947 9.1387 -3.7737 17 1 4.0551 9.5090 -3.4468 18 6 2.7147 9.2773 -5.0919 19 7 1.5450 8.8269 -5.4898 20 14 3.8609 10.1060 -6.3120 21 1 4.7441 9.0863 -6.9328 22 1 3.0595 10.7754 -7.3680 23 1 4.6902 11.1151 -5.6055 24 6 2.8435 8.3702 -1.4038 25 7 3.1965 4.0765 0.0078 26 1 2.2293 4.1504 0.0131 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 6.0824 2.5388 0.0015 33 1 6.2355 5.2110 0.0017 34 1 4.4982 7.1544 0.4348 35 1 2.7816 6.7108 0.5917 36 1 1.6306 5.9026 -1.3559 37 1 2.9027 5.2418 -2.4292 38 1 0.8324 6.8462 -3.3445 39 1 2.4375 6.7788 -4.1315 40 1 0.4510 9.2497 -3.5242 41 1 1.2778 8.9241 -6.4173 42 1 3.6167 9.1315 -1.3009 43 1 2.1013 8.4715 -0.6119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602696911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:35 Heat of formation + Delta-G solvation = -86.957370 kcal Electronic energy + Delta-G solvation = -25570.602617 eV Core-core repulsion = 21809.567799 eV Total energy + Delta-G solvation = -3761.034818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.54739 -40.06034 -38.30882 -36.69981 -34.99021 -32.15739 -32.11486 -31.26572 -31.13192 -28.90043 -27.92153 -25.87092 -24.33570 -23.52688 -22.20380 -20.84907 -20.61333 -19.88318 -19.46568 -18.52535 -17.05846 -16.97460 -16.77242 -15.63688 -15.42895 -14.86255 -14.60313 -14.37326 -14.06940 -13.94366 -13.66107 -13.46811 -13.41596 -13.17691 -12.63192 -12.50320 -12.36635 -12.19936 -12.02750 -11.90094 -11.62623 -11.34726 -11.10785 -10.95561 -10.79110 -10.78400 -10.61234 -10.50898 -10.36995 -9.96163 -9.10831 -9.03898 -8.58307 -8.34511 -8.14606 -7.89785 -6.18007 -4.23539 1.15085 2.42119 2.60188 3.07362 3.11850 3.26476 3.33268 3.37303 4.34901 4.52830 4.60805 4.63835 4.72790 4.76260 4.96893 5.09550 5.14988 5.29146 5.36817 5.47038 5.51784 5.62557 5.64869 5.67424 5.80629 5.94635 6.04761 6.08912 6.12239 6.25088 6.26339 6.42412 6.72980 6.79423 6.89056 6.96326 7.13324 7.31033 7.43884 7.58247 7.59843 7.63030 7.83496 8.18486 8.79034 9.39262 9.48650 10.89560 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.003254 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.372481 B = 8603.991910 C = 9074.396567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 O -0.364 6.364 4 C 0.541 3.459 5 O -0.507 6.507 6 C -0.057 4.057 7 C -0.089 4.089 8 C -0.195 4.195 9 C 0.088 3.912 10 C 0.101 3.899 11 N -0.491 5.491 12 C 0.032 3.968 13 C -0.120 4.120 14 C 0.250 3.750 15 O -0.595 6.595 16 C -0.519 4.519 17 H 0.063 0.937 18 C 0.066 3.934 19 N -0.901 5.901 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.052 3.948 25 N -0.521 5.521 26 H 0.420 0.580 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.102 0.898 35 H 0.041 0.959 36 H 0.021 0.979 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.383 0.617 41 H 0.266 0.734 42 H 0.081 0.919 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.279 -12.805 11.572 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.008 4.008 3 O -0.282 6.282 4 C 0.387 3.613 5 O -0.395 6.395 6 C -0.167 4.167 7 C -0.116 4.116 8 C -0.219 4.219 9 C -0.032 4.032 10 C -0.028 4.028 11 N -0.216 5.216 12 C -0.096 4.096 13 C -0.158 4.158 14 C 0.210 3.790 15 O -0.404 6.404 16 C -0.557 4.557 17 H 0.082 0.918 18 C -0.136 4.136 19 N -0.541 5.541 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.076 4.076 25 N -0.117 5.117 26 H 0.258 0.742 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.120 0.880 35 H 0.059 0.941 36 H 0.039 0.961 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.233 0.767 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.323 -13.132 11.778 17.643 hybrid contribution -0.831 0.083 -0.982 1.289 sum -0.508 -13.049 10.796 16.944 Atomic orbital electron populations 1.21825 0.92504 1.03064 1.03689 1.23025 0.95347 0.79735 1.02720 1.86576 1.24034 1.32852 1.84730 1.19800 0.80370 0.88204 0.72947 1.90882 1.60368 1.41009 1.47254 1.19182 0.91733 0.82946 1.22836 1.21329 0.93231 0.95766 1.01268 1.20690 0.96362 0.93650 1.11231 1.20468 0.89866 0.89682 1.03206 1.20990 1.01382 0.88129 0.92303 1.65564 1.41103 1.03057 1.11894 1.23211 0.92215 0.97243 0.96932 1.22852 0.99082 0.97083 0.96818 1.19243 0.82570 0.87540 0.89626 1.86080 1.36849 1.78216 1.39262 1.21635 1.02899 1.37863 0.93339 0.91850 1.25010 0.95384 0.94848 0.98325 1.69693 1.20175 1.46742 1.17521 0.86460 0.80587 0.79623 0.80530 1.20566 1.21272 1.19785 1.23063 0.96914 0.89417 0.98169 1.41908 1.09315 1.04867 1.55617 0.74176 0.91281 0.90104 0.91485 0.91029 0.91151 0.83267 0.83301 0.87960 0.94056 0.96059 0.91505 0.93087 0.90482 0.76661 0.92464 0.90030 0.94897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.29 37.16 0.38 -0.68 16 2 C 0.07 0.61 6.20 37.16 0.23 0.84 16 3 O -0.36 -4.43 10.23 -41.02 -0.42 -4.85 16 4 C 0.54 7.53 7.93 34.05 0.27 7.80 16 5 O -0.51 -7.98 16.68 -19.36 -0.32 -8.31 16 6 C -0.06 -0.78 7.10 -81.99 -0.58 -1.36 16 7 C -0.09 -1.19 10.66 -39.09 -0.42 -1.60 16 8 C -0.20 -2.56 10.71 -39.98 -0.43 -2.99 16 9 C 0.09 1.19 5.61 -82.20 -0.46 0.73 16 10 C 0.10 1.41 5.60 -4.97 -0.03 1.39 16 11 N -0.49 -8.95 5.48 -231.26 -1.27 -10.22 16 12 C 0.03 0.59 5.18 -2.09 -0.01 0.58 16 13 C -0.12 -2.71 5.55 -25.35 -0.14 -2.85 16 14 C 0.25 6.04 1.05 -90.39 -0.10 5.94 16 15 O -0.60 -15.07 12.94 -35.23 -0.46 -15.53 16 16 C -0.52 -13.74 8.10 -34.44 -0.28 -14.02 16 17 H 0.06 1.69 7.53 -52.49 -0.40 1.29 16 18 C 0.07 1.73 5.02 -17.82 -0.09 1.64 16 19 N -0.90 -23.90 10.82 55.43 0.60 -23.30 16 20 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.05 1.06 5.77 -2.18 -0.01 1.05 16 25 N -0.52 -6.71 5.52 -5.82 -0.03 -6.74 16 26 H 0.42 4.83 8.58 -40.82 -0.35 4.48 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.04 0.54 7.88 -51.93 -0.41 0.14 16 36 H 0.02 0.36 7.64 -51.93 -0.40 -0.04 16 37 H 0.07 1.24 7.87 -51.93 -0.41 0.83 16 38 H 0.05 1.16 7.98 -51.93 -0.41 0.75 16 39 H 0.08 1.95 7.23 -51.93 -0.38 1.57 16 40 H 0.38 9.86 7.33 45.56 0.33 10.20 16 41 H 0.27 6.78 8.31 -40.82 -0.34 6.45 16 42 H 0.08 1.67 7.67 -51.93 -0.40 1.27 16 43 H 0.03 0.65 7.76 -51.93 -0.40 0.24 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -29.33 358.04 -8.92 -38.25 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -5.73 Total: 13.07 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.66 Total: -3.54 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: -0.70 Total: -40.25 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -1.20 Total: -28.68 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.33 -8.92 -38.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602696911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.707 kcal (2) G-P(sol) polarization free energy of solvation -29.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds