Wall clock time and date at job start Tue Mar 31 2020 09:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47215 * 2 1 4 4 O 1.42902 * 109.47261 * 119.99810 * 2 1 3 5 5 C 1.35904 * 116.99805 * 84.88020 * 4 2 1 6 6 C 1.38751 * 120.05694 * 354.58172 * 5 4 2 7 7 C 1.38124 * 119.94345 * 179.97438 * 6 5 4 8 8 C 1.38287 * 120.05779 * 359.97438 * 7 6 5 9 9 N 1.47999 * 119.94391 * 180.02562 * 8 7 6 10 10 O 1.21797 * 120.00412 * 0.02562 * 9 8 7 11 11 O 1.21807 * 119.99961 * 179.97438 * 9 8 7 12 12 C 1.38247 * 120.10906 * 359.79114 * 8 7 6 13 13 C 1.38169 * 120.05449 * 0.46597 * 12 8 7 14 14 C 1.50706 * 120.02533 * 179.79191 * 13 12 8 15 15 N 1.46896 * 109.46874 * 259.71893 * 14 13 12 16 16 C 1.46899 * 110.99971 * 179.97438 * 15 14 13 17 17 H 1.08995 * 109.47077 * 325.00498 * 16 15 14 18 18 C 1.53001 * 109.47025 * 85.00492 * 16 15 14 19 19 C 1.50705 * 109.47184 * 204.99866 * 16 15 14 20 20 H 1.07996 * 119.99954 * 0.02562 * 19 16 15 21 21 C 1.37877 * 119.99891 * 180.02562 * 19 16 15 22 22 N 1.31510 * 119.99940 * 180.02562 * 21 19 16 23 23 Si 1.86801 * 119.99929 * 0.02562 * 21 19 16 24 24 H 1.48499 * 109.47089 * 90.00486 * 23 21 19 25 25 H 1.48502 * 109.47004 * 210.00005 * 23 21 19 26 26 H 1.48495 * 109.47366 * 330.00119 * 23 21 19 27 27 H 1.09004 * 109.46853 * 299.99868 * 1 2 3 28 28 H 1.08991 * 109.46998 * 60.00024 * 1 2 3 29 29 H 1.09001 * 109.46843 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47338 * 239.99609 * 2 1 3 31 31 H 1.09009 * 109.47054 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46951 * 299.99964 * 3 2 1 33 33 H 1.08998 * 109.46883 * 59.99927 * 3 2 1 34 34 H 1.07997 * 120.02756 * 359.97438 * 6 5 4 35 35 H 1.07999 * 119.96826 * 180.02562 * 7 6 5 36 36 H 1.07999 * 119.97300 * 180.23181 * 12 8 7 37 37 H 1.08998 * 109.47213 * 139.72352 * 14 13 12 38 38 H 1.09001 * 109.47150 * 19.71946 * 14 13 12 39 39 H 1.00902 * 111.00732 * 303.95615 * 15 14 13 40 40 H 1.09006 * 109.47313 * 59.99592 * 18 16 15 41 41 H 1.08994 * 109.47387 * 180.02562 * 18 16 15 42 42 H 1.09006 * 109.46872 * 299.99873 * 18 16 15 43 43 H 0.97008 * 119.99944 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1102 -2.0270 1.0987 6 6 1.6560 -2.7032 -0.0245 7 6 1.7631 -4.0786 -0.0914 8 6 2.3229 -4.7817 0.9595 9 7 2.4370 -6.2554 0.8849 10 8 2.0384 -6.8480 -0.1017 11 8 2.9303 -6.8757 1.8099 12 6 2.7806 -4.1099 2.0777 13 6 2.6709 -2.7345 2.1518 14 6 3.1658 -2.0032 3.3731 15 7 2.0283 -1.6798 4.2445 16 6 2.4738 -0.9653 5.4482 17 1 3.4485 -1.3441 5.7557 18 6 2.5809 0.5302 5.1433 19 6 1.4777 -1.1815 6.5583 20 1 0.6016 -1.7892 6.3868 21 6 1.6849 -0.6034 7.7927 22 7 0.8159 -0.7924 8.7616 23 14 3.2000 0.4483 8.0891 24 1 2.8940 1.8625 7.7547 25 1 3.5979 0.3522 9.5166 26 1 4.3125 -0.0335 7.2316 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.2191 -2.1545 -0.8457 35 1 1.4101 -4.6053 -0.9657 36 1 3.2209 -4.6608 2.8957 37 1 3.6634 -1.0825 3.0685 38 1 3.8701 -2.6350 3.9143 39 1 1.3303 -1.1485 3.7459 40 1 1.6062 0.9090 4.8357 41 1 2.9119 1.0603 6.0363 42 1 3.3014 0.6866 4.3404 43 1 0.9619 -0.3860 9.6302 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:27 Heat of formation + Delta-G solvation = -13.676508 kcal Electronic energy + Delta-G solvation = -25747.509700 eV Core-core repulsion = 21989.652578 eV Total energy + Delta-G solvation = -3757.857122 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.13129 -40.87847 -38.28761 -36.52919 -36.38704 -33.87658 -32.94974 -31.66860 -31.14026 -29.01514 -27.71124 -26.22806 -25.35991 -24.73445 -23.63821 -21.66207 -21.27937 -20.28257 -18.87253 -18.66999 -18.56348 -17.46071 -16.72000 -16.51600 -15.90978 -15.39644 -14.95661 -14.91377 -14.60052 -13.93020 -13.83748 -13.58774 -13.26502 -13.00945 -12.83503 -12.69374 -12.64579 -12.44747 -12.27863 -11.96632 -11.80977 -11.51979 -11.43420 -11.27839 -11.18472 -11.08705 -11.03696 -10.98807 -10.49874 -10.15788 -9.65486 -9.42594 -9.20460 -8.83762 -8.58795 -7.52126 -6.06513 -4.04327 -0.11353 0.75617 1.35475 1.46384 2.65864 3.10273 3.22852 3.32586 3.36344 4.11884 4.20215 4.31683 4.37873 4.45180 4.52055 4.61655 4.66838 4.96488 5.11104 5.16125 5.17851 5.24036 5.32100 5.36852 5.40232 5.42253 5.54370 5.60494 5.76974 5.80582 5.82999 5.96691 6.14355 6.18710 6.27138 6.42253 6.46028 6.68158 6.88901 7.05827 7.65315 7.70662 7.82442 8.21853 8.65496 9.04692 9.55507 11.07011 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.004428 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.102585 B = 6322.382905 C = 8204.382341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.073 3.927 3 C -0.150 4.150 4 O -0.290 6.290 5 C 0.192 3.808 6 C -0.215 4.215 7 C -0.019 4.019 8 C -0.086 4.086 9 N 0.038 4.962 10 O -0.177 6.177 11 O -0.163 6.163 12 C 0.001 3.999 13 C -0.099 4.099 14 C 0.101 3.899 15 N -0.664 5.664 16 C 0.184 3.816 17 H 0.035 0.965 18 C -0.180 4.180 19 C -0.499 4.499 20 H 0.081 0.919 21 C 0.068 3.932 22 N -0.900 5.900 23 Si 0.886 3.114 24 H -0.281 1.281 25 H -0.296 1.296 26 H -0.270 1.270 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.161 0.839 37 H 0.041 0.959 38 H 0.081 0.919 39 H 0.334 0.666 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.027 0.973 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 2.027 -22.378 22.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.017 3.983 3 C -0.207 4.207 4 O -0.202 6.202 5 C 0.143 3.857 6 C -0.234 4.234 7 C -0.038 4.038 8 C -0.170 4.170 9 N 0.555 4.445 10 O -0.389 6.389 11 O -0.379 6.379 12 C -0.019 4.019 13 C -0.101 4.101 14 C -0.028 4.028 15 N -0.294 5.294 16 C 0.075 3.925 17 H 0.053 0.947 18 C -0.239 4.239 19 C -0.537 4.537 20 H 0.099 0.901 21 C -0.133 4.133 22 N -0.539 5.539 23 Si 0.717 3.283 24 H -0.208 1.208 25 H -0.224 1.224 26 H -0.195 1.195 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.179 0.821 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.152 0.848 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.060 2.303 -21.681 22.017 hybrid contribution 0.817 1.140 -0.335 1.442 sum 3.877 3.443 -22.016 22.618 Atomic orbital electron populations 1.22426 0.94326 1.03482 1.03881 1.22628 0.94931 0.94040 0.86658 1.21875 1.02229 0.93063 1.03566 1.86273 1.79372 1.15362 1.39182 1.19223 0.90152 0.83462 0.92817 1.21218 1.08303 0.93919 0.99941 1.20707 0.92754 0.93540 0.96845 1.20924 1.15618 0.79485 1.00939 1.43514 0.97718 1.03543 0.99723 1.94496 1.51260 1.70234 1.22950 1.94558 1.45013 1.67866 1.30479 1.20801 0.92806 0.93055 0.95250 1.19363 1.02466 0.91913 0.96335 1.20806 0.94779 0.97731 0.89520 1.60755 1.10491 1.51207 1.06957 1.19661 0.97190 0.87093 0.88568 0.94725 1.22831 1.00123 1.01742 0.99213 1.20948 1.08345 1.30979 0.93439 0.90067 1.24932 0.96051 0.96320 0.96035 1.69882 1.35675 1.45015 1.03292 0.86893 0.84254 0.80733 0.76420 1.20831 1.22396 1.19490 0.90623 0.90684 0.91645 0.90645 0.91529 0.90254 0.90876 0.83223 0.83037 0.82114 0.94078 0.90018 0.84843 0.92781 0.93680 0.95437 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 9.17 37.16 0.34 -0.97 16 2 C 0.07 0.56 2.85 -26.73 -0.08 0.49 16 3 C -0.15 -1.03 9.56 37.16 0.36 -0.67 16 4 O -0.29 -3.26 8.99 -19.44 -0.17 -3.44 16 5 C 0.19 2.23 6.57 -39.22 -0.26 1.97 16 6 C -0.21 -2.02 8.24 -39.43 -0.32 -2.34 16 7 C -0.02 -0.20 9.55 -39.61 -0.38 -0.58 16 8 C -0.09 -1.12 6.85 -79.94 -0.55 -1.67 16 9 N 0.04 0.57 4.45 33.97 0.15 0.72 16 10 O -0.18 -2.63 18.44 -29.46 -0.54 -3.18 16 11 O -0.16 -2.62 18.44 -29.46 -0.54 -3.17 16 12 C 0.00 0.01 9.17 -39.60 -0.36 -0.36 16 13 C -0.10 -1.33 5.41 -104.47 -0.56 -1.90 16 14 C 0.10 1.58 5.28 -4.98 -0.03 1.56 16 15 N -0.66 -12.94 6.22 -109.22 -0.68 -13.62 16 16 C 0.18 4.18 2.17 -68.86 -0.15 4.03 16 17 H 0.03 0.82 6.86 -51.93 -0.36 0.46 16 18 C -0.18 -3.74 8.64 37.16 0.32 -3.42 16 19 C -0.50 -13.85 9.42 -34.44 -0.32 -14.18 16 20 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 21 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 22 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 23 Si 0.89 21.60 24.37 -169.99 -4.14 17.46 16 24 H -0.28 -6.67 6.87 56.52 0.39 -6.28 16 25 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.27 -6.26 6.53 56.52 0.37 -5.90 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.49 6.90 -51.93 -0.36 0.13 16 30 H 0.08 0.45 6.32 -51.93 -0.33 0.13 16 31 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.15 0.97 5.43 -52.49 -0.28 0.69 16 35 H 0.15 1.28 7.61 -52.49 -0.40 0.88 16 36 H 0.16 2.12 7.58 -52.49 -0.40 1.72 16 37 H 0.04 0.63 7.15 -51.93 -0.37 0.26 16 38 H 0.08 1.26 7.91 -51.93 -0.41 0.85 16 39 H 0.33 6.30 8.41 -39.29 -0.33 5.97 16 40 H 0.05 1.09 8.13 -51.93 -0.42 0.67 16 41 H 0.04 0.99 3.27 -51.93 -0.17 0.82 16 42 H 0.03 0.49 7.45 -51.93 -0.39 0.10 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -31.66 353.80 -7.85 -39.51 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.93 Total: 3.22 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -2.09 Total: -16.19 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.25 Total: -39.55 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -1.26 Total: -9.78 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.14 Total: 17.46 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.66 -7.85 -39.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.833 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds