Wall clock time and date at job start Tue Mar 31 2020 09:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35978 * 116.99950 * 2 1 4 4 C 1.38712 * 119.97214 * 0.02562 * 3 2 1 5 5 C 1.38235 * 120.12144 * 180.02562 * 4 3 2 6 6 C 1.38522 * 120.06889 * 359.95901 * 5 4 3 7 7 O 1.36046 * 120.02960 * 180.29464 * 6 5 4 8 8 C 1.42894 * 117.00081 * 359.72523 * 7 6 5 9 9 C 1.39284 * 119.94219 * 0.02562 * 6 5 4 10 10 N 1.40111 * 120.06040 * 180.02562 * 9 6 5 11 11 C 1.34772 * 120.00099 * 204.79203 * 10 9 6 12 12 O 1.21296 * 120.00150 * 5.53109 * 11 10 9 13 13 C 1.50702 * 119.99724 * 185.53467 * 11 10 9 14 14 N 1.46904 * 109.46643 * 180.02562 * 13 11 10 15 15 C 1.46905 * 110.99728 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.47465 * 325.00194 * 15 14 13 17 17 C 1.53005 * 109.46743 * 85.00274 * 15 14 13 18 18 C 1.50697 * 109.47215 * 204.99902 * 15 14 13 19 19 H 1.07999 * 119.99933 * 0.02562 * 18 15 14 20 20 C 1.37875 * 120.00486 * 180.02562 * 18 15 14 21 21 N 1.31526 * 119.99540 * 0.02562 * 20 18 15 22 22 Si 1.86795 * 120.00716 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.46744 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47054 * 119.99666 * 22 20 18 25 25 H 1.48492 * 109.47222 * 240.00352 * 22 20 18 26 26 C 1.38621 * 119.96919 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47370 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47557 * 300.00864 * 1 2 3 29 29 H 1.09006 * 109.46985 * 60.00720 * 1 2 3 30 30 H 1.07997 * 119.94559 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.96899 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47280 * 299.99427 * 8 7 6 33 33 H 1.09002 * 109.47462 * 59.99975 * 8 7 6 34 34 H 1.08998 * 109.47215 * 179.97438 * 8 7 6 35 35 H 0.97007 * 119.99816 * 24.79680 * 10 9 6 36 36 H 1.08991 * 109.47071 * 299.99556 * 13 11 10 37 37 H 1.08999 * 109.47410 * 59.99834 * 13 11 10 38 38 H 1.00894 * 111.00012 * 303.94986 * 14 13 11 39 39 H 1.08991 * 109.47502 * 59.99995 * 17 15 14 40 40 H 1.09007 * 109.46832 * 180.02562 * 17 15 14 41 41 H 1.08997 * 109.46834 * 299.99434 * 17 15 14 42 42 H 0.96997 * 119.99697 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.03407 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2903 2.3745 0.0005 5 6 1.9146 3.6079 0.0000 6 6 3.2977 3.6856 -0.0002 7 8 3.9113 4.8998 0.0053 8 6 3.0676 6.0531 0.0051 9 6 4.0595 2.5196 -0.0004 10 7 5.4586 2.5954 -0.0001 11 6 6.1889 1.5740 -0.4897 12 8 5.6369 0.6339 -1.0215 13 6 7.6914 1.5998 -0.3763 14 7 8.2490 0.3827 -0.9812 15 6 9.7152 0.3734 -0.8894 16 1 10.0924 1.3905 -0.9958 17 6 10.1375 -0.1876 0.4700 18 6 10.2817 -0.4898 -1.9870 19 1 9.6190 -0.9820 -2.6834 20 6 11.6461 -0.6514 -2.1023 21 7 12.4532 -0.0524 -1.2539 22 14 12.3485 -1.7208 -3.4633 23 1 11.2386 -2.2781 -4.2774 24 1 13.2350 -0.9020 -4.3286 25 1 13.1299 -2.8330 -2.8654 26 6 3.4307 1.2834 -0.0005 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 0.2119 2.3165 0.0014 31 1 1.3235 4.5118 0.0000 32 1 2.4419 6.0454 -0.8874 33 1 2.4349 6.0407 0.8926 34 1 3.6824 6.9531 0.0103 35 1 5.9016 3.3831 0.3526 36 1 8.0801 2.4748 -0.8972 37 1 7.9758 1.6467 0.6749 38 1 7.8547 -0.4443 -0.5586 39 1 9.7603 -1.2046 0.5764 40 1 11.2254 -0.1941 0.5382 41 1 9.7277 0.4368 1.2638 42 1 13.4131 -0.1658 -1.3352 43 1 4.0189 0.3777 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602864112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:20 Heat of formation + Delta-G solvation = -68.353584 kcal Electronic energy + Delta-G solvation = -24958.350395 eV Core-core repulsion = 21198.122298 eV Total energy + Delta-G solvation = -3760.228097 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.96664 -39.46162 -39.06197 -36.59287 -35.65932 -34.42063 -32.48993 -30.67522 -29.77574 -28.83442 -27.50308 -27.07486 -25.41626 -24.94171 -22.86850 -21.93736 -20.27869 -20.14544 -18.81528 -17.87466 -17.39251 -16.55483 -16.31964 -16.09356 -15.72963 -15.68464 -15.24509 -14.93595 -14.62820 -14.46952 -13.85318 -13.67596 -13.29844 -13.07502 -12.97418 -12.74832 -12.63751 -12.49290 -11.85081 -11.83053 -11.65406 -11.56274 -11.22381 -10.92702 -10.83862 -10.75704 -10.51145 -10.30177 -10.13716 -9.94352 -9.47553 -8.96289 -8.43376 -8.34255 -7.68091 -7.26072 -5.96780 -3.99147 1.09284 1.31181 2.81874 2.91474 3.02176 3.35364 3.36297 3.42899 3.50298 3.67550 4.47958 4.52066 4.70754 4.84333 4.87411 4.89570 4.94357 5.00336 5.02493 5.21351 5.26618 5.31973 5.35042 5.36903 5.69322 5.73044 5.81991 5.86419 5.98346 6.14275 6.27065 6.64186 6.66064 6.83359 7.05895 7.10243 7.26470 7.35616 7.49792 7.74433 7.90723 8.24945 8.33315 8.52388 8.60462 9.09333 9.66244 11.10594 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018565 B = 0.002800 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.823320 B = 9998.319117 C =10996.779303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.117 3.883 4 C -0.197 4.197 5 C -0.148 4.148 6 C 0.056 3.944 7 O -0.319 6.319 8 C 0.031 3.969 9 C 0.176 3.824 10 N -0.669 5.669 11 C 0.512 3.488 12 O -0.499 6.499 13 C 0.045 3.955 14 N -0.668 5.668 15 C 0.212 3.788 16 H 0.035 0.965 17 C -0.171 4.171 18 C -0.493 4.493 19 H 0.065 0.935 20 C 0.054 3.946 21 N -0.899 5.899 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.286 1.286 26 C -0.133 4.133 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.416 0.584 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.336 0.664 39 H 0.030 0.970 40 H 0.091 0.909 41 H 0.005 0.995 42 H 0.259 0.741 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.614 10.945 6.832 26.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.071 3.929 4 C -0.217 4.217 5 C -0.168 4.168 6 C 0.009 3.991 7 O -0.233 6.233 8 C -0.064 4.064 9 C 0.079 3.921 10 N -0.315 5.315 11 C 0.300 3.700 12 O -0.372 6.372 13 C -0.088 4.088 14 N -0.299 5.299 15 C 0.105 3.895 16 H 0.053 0.947 17 C -0.231 4.231 18 C -0.531 4.531 19 H 0.083 0.917 20 C -0.146 4.146 21 N -0.539 5.539 22 Si 0.727 3.273 23 H -0.196 1.196 24 H -0.212 1.212 25 H -0.212 1.212 26 C -0.154 4.154 27 H 0.117 0.883 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.252 0.748 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.154 0.846 39 H 0.049 0.951 40 H 0.110 0.890 41 H 0.024 0.976 42 H 0.069 0.931 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -23.430 10.350 5.824 26.268 hybrid contribution 0.222 0.097 0.470 0.529 sum -23.208 10.446 6.295 26.217 Atomic orbital electron populations 1.23029 0.78717 1.03844 1.01060 1.86124 1.20980 1.26571 1.88960 1.18667 0.91734 0.84189 0.98288 1.20927 0.99843 0.91575 1.09336 1.20734 0.92338 0.98354 1.05351 1.18531 0.90928 0.84373 1.05247 1.86014 1.35462 1.11993 1.89827 1.22999 0.95802 0.86502 1.01076 1.16765 0.83100 0.90529 1.01676 1.43590 1.03548 1.22161 1.62217 1.21376 0.90641 0.81484 0.76508 1.90663 1.72593 1.33932 1.40002 1.21802 0.88608 0.99026 0.99324 1.60596 1.09102 1.01220 1.59021 1.19239 0.80129 0.97282 0.92896 0.94663 1.22464 1.05363 0.97911 0.97322 1.21200 0.91143 1.28302 1.12493 0.91650 1.24946 0.97027 0.96203 0.96416 1.69893 1.03241 1.44173 1.36634 0.86423 0.78923 0.80085 0.81897 1.19637 1.21166 1.21222 1.20483 0.91799 0.98036 1.05070 0.88316 0.92866 0.92795 0.85343 0.85008 0.92825 0.92890 0.88276 0.74787 0.88358 0.92894 0.84577 0.95109 0.89042 0.97632 0.93142 0.81959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.97 10.50 -19.67 -0.21 -4.18 16 3 C 0.12 1.55 6.68 -39.27 -0.26 1.28 16 4 C -0.20 -2.08 9.03 -39.41 -0.36 -2.43 16 5 C -0.15 -1.51 9.03 -39.48 -0.36 -1.86 16 6 C 0.06 0.68 6.70 -39.09 -0.26 0.41 16 7 O -0.32 -3.40 9.91 -19.89 -0.20 -3.60 16 8 C 0.03 0.20 9.81 101.05 0.99 1.20 16 9 C 0.18 2.50 6.44 -83.51 -0.54 1.96 16 10 N -0.67 -9.26 5.29 -9.76 -0.05 -9.31 16 11 C 0.51 8.66 7.67 -10.99 -0.08 8.58 16 12 O -0.50 -10.13 13.37 5.54 0.07 -10.05 16 13 C 0.05 0.79 5.97 -4.97 -0.03 0.76 16 14 N -0.67 -14.75 5.86 -109.22 -0.64 -15.39 16 15 C 0.21 5.32 2.57 -68.86 -0.18 5.14 16 16 H 0.04 0.94 7.80 -51.93 -0.40 0.54 16 17 C -0.17 -4.08 8.94 37.16 0.33 -3.75 16 18 C -0.49 -13.88 8.84 -34.44 -0.30 -14.18 16 19 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 20 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 21 N -0.90 -25.71 11.32 55.43 0.63 -25.09 16 22 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C -0.13 -2.02 8.66 -39.27 -0.34 -2.36 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 29 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 30 H 0.13 0.99 6.28 -52.49 -0.33 0.66 16 31 H 0.13 0.95 6.29 -52.49 -0.33 0.62 16 32 H 0.05 0.31 7.67 -51.93 -0.40 -0.09 16 33 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.42 4.66 8.34 -40.82 -0.34 4.32 16 36 H 0.10 1.63 8.05 -51.93 -0.42 1.21 16 37 H 0.05 0.84 7.44 -51.93 -0.39 0.45 16 38 H 0.34 7.40 8.17 -39.29 -0.32 7.08 16 39 H 0.03 0.71 8.13 -51.93 -0.42 0.29 16 40 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 41 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.16 2.82 5.79 -52.49 -0.30 2.52 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -33.17 355.41 -6.49 -39.66 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -5.94 Total: 8.39 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -0.49 Total: -2.62 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.06 Total: -49.79 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.33 Total: -17.83 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.17 -6.49 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.694 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds