Wall clock time and date at job start Tue Mar 31 2020 09:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35984 * 117.00337 * 2 1 4 4 C 1.38725 * 119.96659 * 359.97438 * 3 2 1 5 5 C 1.38234 * 120.11846 * 179.97438 * 4 3 2 6 6 C 1.38519 * 120.06955 * 0.02562 * 5 4 3 7 7 O 1.36048 * 120.03088 * 179.97438 * 6 5 4 8 8 C 1.42903 * 116.99627 * 0.02562 * 7 6 5 9 9 C 1.39277 * 119.94613 * 359.97438 * 6 5 4 10 10 N 1.40112 * 120.06388 * 179.97438 * 9 6 5 11 11 C 1.34769 * 120.00077 * 155.45912 * 10 9 6 12 12 O 1.21300 * 120.00393 * 354.47274 * 11 10 9 13 13 C 1.50703 * 120.00126 * 174.47234 * 11 10 9 14 14 N 1.46904 * 109.47357 * 180.02562 * 13 11 10 15 15 C 1.46899 * 110.99890 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.47070 * 34.99951 * 15 14 13 17 17 C 1.53002 * 109.46938 * 274.99857 * 15 14 13 18 18 C 1.50696 * 109.46871 * 155.00082 * 15 14 13 19 19 H 1.07995 * 120.00240 * 0.02562 * 18 15 14 20 20 C 1.37881 * 119.99798 * 179.97438 * 18 15 14 21 21 N 1.31520 * 119.99890 * 180.02562 * 20 18 15 22 22 Si 1.86797 * 120.00195 * 0.02562 * 20 18 15 23 23 H 1.48503 * 109.46945 * 269.99901 * 22 20 18 24 24 H 1.48496 * 109.47042 * 29.99754 * 22 20 18 25 25 H 1.48494 * 109.47171 * 149.99894 * 22 20 18 26 26 C 1.38615 * 119.97479 * 180.27350 * 3 2 1 27 27 H 1.09002 * 109.47131 * 60.00182 * 1 2 3 28 28 H 1.09003 * 109.47087 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47286 * 300.00360 * 1 2 3 30 30 H 1.08001 * 119.93901 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.96964 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.47291 * 60.00252 * 8 7 6 33 33 H 1.09001 * 109.47035 * 179.97438 * 8 7 6 34 34 H 1.08995 * 109.47313 * 299.99925 * 8 7 6 35 35 H 0.96995 * 119.99748 * 335.46481 * 10 9 6 36 36 H 1.08995 * 109.47196 * 59.99860 * 13 11 10 37 37 H 1.09002 * 109.46930 * 300.00255 * 13 11 10 38 38 H 1.00895 * 111.00148 * 303.95389 * 14 13 11 39 39 H 1.09002 * 109.47240 * 60.00772 * 17 15 14 40 40 H 1.09003 * 109.46590 * 179.97438 * 17 15 14 41 41 H 1.08996 * 109.47705 * 300.00167 * 17 15 14 42 42 H 0.96991 * 119.99897 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.04035 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2902 2.3746 -0.0005 5 6 1.9146 3.6079 0.0000 6 6 3.2976 3.6857 0.0005 7 8 3.9113 4.8999 0.0005 8 6 3.0675 6.0532 0.0005 9 6 4.0595 2.5198 0.0011 10 7 5.4586 2.5956 0.0011 11 6 6.1888 1.5721 0.4863 12 8 5.6368 0.6297 1.0141 13 6 7.6914 1.5984 0.3732 14 7 8.2490 0.3781 0.9718 15 6 9.7150 0.3688 0.8790 16 1 10.0926 1.3852 0.9901 17 6 10.1362 -0.1858 -0.4834 18 6 10.2819 -0.5001 1.9720 19 1 9.6194 -0.9960 2.6659 20 6 11.6463 -0.6626 2.0855 21 7 12.1411 -1.4213 3.0392 22 14 12.7922 0.1946 0.8849 23 1 13.0344 -0.6883 -0.2844 24 1 12.1705 1.4630 0.4271 25 1 14.0826 0.4904 1.5576 26 6 3.4306 1.2834 -0.0057 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2118 2.3164 -0.0014 31 1 1.3235 4.5119 0.0000 32 1 2.4382 6.0431 0.8905 33 1 3.6823 6.9532 0.0010 34 1 2.4382 6.0431 -0.8894 35 1 5.9015 3.3847 -0.3481 36 1 8.0800 2.4711 0.8979 37 1 7.9758 1.6498 -0.6778 38 1 7.9462 0.2738 1.9286 39 1 9.7262 0.4427 -1.2740 40 1 11.2240 -0.1923 -0.5524 41 1 9.7586 -1.2022 -0.5946 42 1 13.1009 -1.5360 3.1188 43 1 4.0190 0.3778 -0.0106 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602864115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:24 Heat of formation + Delta-G solvation = -60.688583 kcal Electronic energy + Delta-G solvation = -25020.382492 eV Core-core repulsion = 21260.486774 eV Total energy + Delta-G solvation = -3759.895718 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.00785 -39.51727 -39.09492 -36.65365 -35.81307 -34.48072 -32.48391 -30.80305 -30.05568 -29.35279 -27.58156 -27.09984 -25.95166 -24.78350 -22.92292 -21.97936 -20.31854 -19.89669 -18.86505 -17.90145 -17.48610 -16.74498 -16.40614 -16.18904 -15.94785 -15.73156 -15.59918 -14.97008 -14.86786 -14.34091 -13.82673 -13.72439 -13.49497 -13.33697 -13.00452 -12.92264 -12.74625 -12.54898 -12.16040 -11.98359 -11.88312 -11.83524 -11.31213 -11.20506 -10.97287 -10.83558 -10.66090 -10.33547 -10.11362 -9.58779 -9.45491 -9.03685 -8.60980 -8.46998 -7.71843 -7.55698 -6.08871 -4.09276 1.05916 1.28263 2.74546 2.86189 2.98703 3.27075 3.32459 3.34804 3.38325 3.63775 4.38153 4.49257 4.67163 4.81539 4.84628 4.85816 4.90522 4.93743 4.99788 5.10260 5.17626 5.25081 5.26188 5.31073 5.64093 5.66708 5.68989 5.72029 5.95242 6.10339 6.24922 6.34413 6.50051 6.60120 6.66104 6.76084 7.06929 7.32874 7.36077 7.39244 7.55373 7.87086 8.23643 8.33610 8.59901 8.97134 9.52086 11.04149 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.019378 B = 0.002903 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.622725 B = 9642.764906 C =10690.206065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.118 3.882 4 C -0.196 4.196 5 C -0.148 4.148 6 C 0.055 3.945 7 O -0.320 6.320 8 C 0.031 3.969 9 C 0.175 3.825 10 N -0.669 5.669 11 C 0.512 3.488 12 O -0.497 6.497 13 C 0.042 3.958 14 N -0.662 5.662 15 C 0.184 3.816 16 H 0.003 0.997 17 C -0.139 4.139 18 C -0.521 4.521 19 H 0.081 0.919 20 C 0.072 3.928 21 N -0.897 5.897 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.269 1.269 25 H -0.298 1.298 26 C -0.132 4.132 27 H 0.053 0.947 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.416 0.584 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.351 0.649 39 H 0.025 0.975 40 H 0.038 0.962 41 H 0.060 0.940 42 H 0.265 0.735 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.394 14.819 -9.368 29.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.072 3.928 4 C -0.216 4.216 5 C -0.168 4.168 6 C 0.009 3.991 7 O -0.234 6.234 8 C -0.064 4.064 9 C 0.078 3.922 10 N -0.315 5.315 11 C 0.300 3.700 12 O -0.369 6.369 13 C -0.091 4.091 14 N -0.296 5.296 15 C 0.075 3.925 16 H 0.020 0.980 17 C -0.197 4.197 18 C -0.559 4.559 19 H 0.099 0.901 20 C -0.131 4.131 21 N -0.535 5.535 22 Si 0.722 3.278 23 H -0.204 1.204 24 H -0.194 1.194 25 H -0.225 1.225 26 C -0.153 4.153 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.252 0.748 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.171 0.829 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -23.318 13.491 -9.451 28.549 hybrid contribution 0.575 1.796 -0.148 1.892 sum -22.743 15.288 -9.599 29.036 Atomic orbital electron populations 1.23032 0.78691 1.03891 1.01047 1.86132 1.20995 1.26522 1.88911 1.18677 0.91738 0.84212 0.98194 1.20943 0.99880 0.91569 1.09218 1.20732 0.92326 0.98366 1.05347 1.18519 0.90939 0.84335 1.05328 1.86009 1.35490 1.12013 1.89864 1.23000 0.95800 0.86468 1.01114 1.16746 0.82983 0.90546 1.01914 1.43544 1.03629 1.21767 1.62533 1.21242 0.90508 0.81431 0.76847 1.90684 1.72530 1.33316 1.40356 1.21853 0.88947 0.95476 1.02776 1.60307 1.11195 1.32628 1.25461 1.19572 0.82965 0.95550 0.94413 0.97970 1.22100 0.98663 1.01504 0.97418 1.21089 0.92545 1.29422 1.12856 0.90120 1.24935 0.98024 0.94741 0.95375 1.69892 1.12889 1.38270 1.32424 0.86791 0.79762 0.80477 0.80723 1.20443 1.19377 1.22540 1.20513 0.91836 0.98091 1.04850 0.92863 0.88274 0.92794 0.85308 0.84999 0.92818 0.88300 0.92852 0.74827 0.92663 0.88360 0.82928 0.95585 0.94343 0.92084 0.92531 0.81808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.94 10.50 -19.69 -0.21 -4.15 16 3 C 0.12 1.53 6.68 -39.26 -0.26 1.27 16 4 C -0.20 -2.02 9.03 -39.40 -0.36 -2.38 16 5 C -0.15 -1.46 9.03 -39.48 -0.36 -1.82 16 6 C 0.06 0.65 6.70 -39.09 -0.26 0.38 16 7 O -0.32 -3.26 9.90 -19.89 -0.20 -3.45 16 8 C 0.03 0.19 9.81 101.05 0.99 1.18 16 9 C 0.17 2.40 6.44 -83.51 -0.54 1.86 16 10 N -0.67 -8.81 5.29 -9.76 -0.05 -8.87 16 11 C 0.51 8.28 7.67 -10.99 -0.08 8.20 16 12 O -0.50 -9.80 13.37 5.54 0.07 -9.72 16 13 C 0.04 0.69 5.97 -4.97 -0.03 0.66 16 14 N -0.66 -14.03 5.93 -109.22 -0.65 -14.68 16 15 C 0.18 4.34 2.19 -68.87 -0.15 4.19 16 16 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 17 C -0.14 -3.09 8.89 37.16 0.33 -2.76 16 18 C -0.52 -14.76 9.17 -34.44 -0.32 -15.07 16 19 H 0.08 2.49 7.86 -52.49 -0.41 2.08 16 20 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 21 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 22 Si 0.89 21.89 24.37 -169.99 -4.14 17.75 16 23 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 24 H -0.27 -6.24 6.53 56.52 0.37 -5.87 16 25 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 26 C -0.13 -1.98 8.65 -39.27 -0.34 -2.32 16 27 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 28 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 30 H 0.13 0.97 6.28 -52.49 -0.33 0.64 16 31 H 0.13 0.91 6.29 -52.49 -0.33 0.58 16 32 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 35 H 0.42 4.34 8.34 -40.82 -0.34 4.00 16 36 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 37 H 0.10 1.44 7.43 -51.93 -0.39 1.05 16 38 H 0.35 7.82 7.92 -39.29 -0.31 7.50 16 39 H 0.03 0.49 7.45 -51.93 -0.39 0.10 16 40 H 0.04 0.88 3.27 -51.93 -0.17 0.71 16 41 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.16 2.85 5.79 -52.49 -0.30 2.54 16 LS Contribution 348.27 15.07 5.25 5.25 Total: -1.00 -34.35 348.27 -5.41 -39.77 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.79 Total: 8.28 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -0.48 Total: -3.41 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.07 Total: -50.32 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.33 Total: -17.32 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.14 Total: 17.75 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.35 -5.41 -39.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.923 kcal (2) G-P(sol) polarization free energy of solvation -34.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds