Wall clock time and date at job start Tue Mar 31 2020 09:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36061 * 116.99899 * 2 1 4 4 C 1.38561 * 120.00455 * 0.02562 * 3 2 1 5 5 C 1.38182 * 120.06983 * 179.97438 * 4 3 2 6 6 C 1.38850 * 120.07351 * 0.04337 * 5 4 3 7 7 N 1.40099 * 119.99460 * 179.97438 * 6 5 4 8 8 C 1.34779 * 119.99806 * 35.09938 * 7 6 5 9 9 O 1.21287 * 120.00330 * 355.38364 * 8 7 6 10 10 C 1.50705 * 119.99693 * 175.37594 * 8 7 6 11 11 N 1.46904 * 109.47047 * 179.97438 * 10 8 7 12 12 C 1.46893 * 110.99959 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.47238 * 325.00415 * 12 11 10 14 14 C 1.52998 * 109.47245 * 85.00472 * 12 11 10 15 15 C 1.50707 * 109.47077 * 205.00231 * 12 11 10 16 16 H 1.07996 * 119.99524 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99602 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00606 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 119.99778 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47495 * 89.99302 * 19 17 15 21 21 H 1.48493 * 109.47563 * 209.99916 * 19 17 15 22 22 H 1.48505 * 109.47059 * 329.99705 * 19 17 15 23 23 C 1.38810 * 120.00808 * 0.23695 * 6 5 4 24 24 C 1.38503 * 119.92965 * 359.46344 * 23 6 5 25 25 O 1.35991 * 120.03900 * 180.27858 * 24 23 6 26 26 C 1.42903 * 116.99813 * 0.27930 * 25 24 23 27 27 H 1.09001 * 109.47121 * 299.99743 * 1 2 3 28 28 H 1.09004 * 109.47388 * 60.00212 * 1 2 3 29 29 H 1.09005 * 109.47181 * 179.97438 * 1 2 3 30 30 H 1.07999 * 119.96366 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.96535 * 180.02562 * 5 4 3 32 32 H 0.96998 * 120.00131 * 215.09943 * 7 6 5 33 33 H 1.08998 * 109.46918 * 60.00772 * 10 8 7 34 34 H 1.08993 * 109.47392 * 300.00627 * 10 8 7 35 35 H 1.00905 * 110.99787 * 56.04879 * 11 10 8 36 36 H 1.08998 * 109.46798 * 299.99837 * 14 12 11 37 37 H 1.09002 * 109.47547 * 59.99836 * 14 12 11 38 38 H 1.08998 * 109.47634 * 179.97438 * 14 12 11 39 39 H 0.96998 * 119.99973 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.03550 * 179.74969 * 23 6 5 41 41 H 1.09001 * 109.47058 * 179.97438 * 26 25 24 42 42 H 1.08998 * 109.46951 * 299.99805 * 26 25 24 43 43 H 1.09001 * 109.47152 * 59.99754 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2123 0.0000 4 6 1.2921 2.3744 0.0005 5 6 1.9180 3.6064 0.0011 6 6 3.3044 3.6824 0.0002 7 7 3.9373 4.9323 0.0002 8 6 3.3901 5.9647 0.6720 9 8 2.3090 5.8356 1.2066 10 6 4.1217 7.2793 0.7593 11 7 3.3218 8.2341 1.5381 12 6 4.0050 9.5302 1.6438 13 1 5.0811 9.3694 1.7093 14 6 3.6900 10.3752 0.4078 15 6 3.5284 10.2500 2.8791 16 1 2.7920 9.7903 3.5216 17 6 4.0326 11.4953 3.1890 18 7 4.9298 12.0548 2.4069 19 14 3.4425 12.3872 4.7205 20 1 4.3096 12.0239 5.8700 21 1 3.5074 13.8535 4.4955 22 1 2.0411 11.9930 5.0138 23 6 4.0634 2.5202 -0.0063 24 6 3.4363 1.2853 -0.0005 25 8 4.1778 0.1453 -0.0011 26 6 5.5989 0.2957 -0.0015 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2136 2.3173 0.0014 31 1 1.3281 4.5111 0.0019 32 1 4.7692 5.0547 -0.4834 33 1 4.2815 7.6735 -0.2443 34 1 5.0843 7.1278 1.2476 35 1 3.1048 7.8638 2.4513 36 1 4.0347 9.8546 -0.4856 37 1 2.6139 10.5360 0.3422 38 1 4.1965 11.3371 0.4864 39 1 5.2847 12.9307 2.6252 40 1 5.1418 2.5789 -0.0110 41 1 6.0684 -0.6880 -0.0015 42 1 5.9058 0.8451 -0.8915 43 1 5.9064 0.8448 0.8885 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:28 Heat of formation + Delta-G solvation = -70.919230 kcal Electronic energy + Delta-G solvation = -24716.293705 eV Core-core repulsion = 20955.954353 eV Total energy + Delta-G solvation = -3760.339352 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.92509 -39.71566 -38.60147 -37.06549 -35.60182 -34.20328 -32.54408 -30.49403 -30.00937 -28.97197 -27.45833 -27.15176 -25.64389 -24.80839 -22.72171 -22.13408 -20.40111 -19.80581 -18.78223 -17.82071 -17.55634 -16.58740 -16.28379 -16.04536 -15.99918 -15.44080 -15.41725 -14.89382 -14.69462 -14.60631 -14.11377 -13.63851 -13.34729 -13.21382 -12.87368 -12.84006 -12.53941 -12.38170 -11.90676 -11.69365 -11.53287 -11.39245 -11.31002 -11.24165 -10.93574 -10.79908 -10.41015 -10.17726 -10.10061 -9.85933 -9.50674 -8.88699 -8.74136 -8.51263 -7.63770 -7.37532 -6.06795 -4.12855 1.07955 1.29885 2.76690 2.95248 3.08608 3.18172 3.28650 3.35350 3.40669 3.62422 4.38497 4.58421 4.76993 4.82584 4.91309 4.91921 4.97954 5.08445 5.12043 5.18484 5.22989 5.24583 5.29752 5.32258 5.36402 5.65154 5.75842 5.80189 6.18730 6.21043 6.31229 6.73001 6.78128 6.84530 7.05489 7.13037 7.33775 7.40092 7.46454 7.75070 7.82340 8.21150 8.28652 8.29897 8.58664 8.96704 9.53343 10.99712 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.024830 B = 0.002423 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.385137 B =11552.927948 C =12010.645776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.078 3.922 4 C -0.152 4.152 5 C -0.116 4.116 6 C 0.158 3.842 7 N -0.681 5.681 8 C 0.513 3.487 9 O -0.503 6.503 10 C 0.045 3.955 11 N -0.672 5.672 12 C 0.212 3.788 13 H 0.003 0.997 14 C -0.126 4.126 15 C -0.518 4.518 16 H 0.062 0.938 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.202 4.202 24 C 0.115 3.885 25 O -0.306 6.306 26 C 0.026 3.974 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.138 0.862 31 H 0.147 0.853 32 H 0.409 0.591 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.342 0.658 36 H 0.003 0.997 37 H 0.033 0.967 38 H 0.082 0.918 39 H 0.261 0.739 40 H 0.138 0.862 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 -22.894 -8.147 24.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.032 3.968 4 C -0.171 4.171 5 C -0.137 4.137 6 C 0.063 3.937 7 N -0.328 5.328 8 C 0.301 3.699 9 O -0.375 6.375 10 C -0.088 4.088 11 N -0.306 5.306 12 C 0.105 3.895 13 H 0.020 0.980 14 C -0.184 4.184 15 C -0.557 4.557 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.224 4.224 24 C 0.069 3.931 25 O -0.220 6.220 26 C -0.069 4.069 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.155 0.845 31 H 0.165 0.835 32 H 0.245 0.755 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.160 0.840 36 H 0.022 0.978 37 H 0.053 0.947 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.155 0.845 41 H 0.117 0.883 42 H 0.073 0.927 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.448 -22.914 -8.267 24.402 hybrid contribution 0.952 0.727 1.147 1.658 sum -0.496 -22.186 -7.120 23.306 Atomic orbital electron populations 1.23047 0.78752 1.03748 1.01328 1.86148 1.20842 1.25913 1.89453 1.18198 0.89018 0.85230 1.04331 1.20992 1.00048 0.90913 1.05179 1.21112 0.93145 0.98396 1.01019 1.17396 0.91624 0.84395 1.00286 1.43680 1.27612 1.08588 1.52880 1.21338 0.86375 0.85304 0.76865 1.90675 1.20259 1.82228 1.44338 1.21816 0.95136 0.89659 1.02161 1.60531 1.45097 1.03329 1.21614 1.19163 0.91730 0.83658 0.94902 0.97976 1.21742 1.00050 1.01800 0.94843 1.21247 1.24220 1.02686 1.07547 0.92010 1.24908 0.94886 0.97201 0.96976 1.69887 1.29169 1.16576 1.37337 0.86490 0.79297 0.78731 0.82876 1.20741 1.21173 1.19748 1.20727 1.00119 0.90148 1.11358 1.17859 0.88095 0.85445 1.01675 1.86173 1.18619 1.28060 1.89116 1.23065 0.78764 1.03791 1.01317 0.92674 0.92760 0.88394 0.84457 0.83493 0.75510 0.88530 0.92937 0.83971 0.97755 0.94735 0.89907 0.92877 0.84473 0.88268 0.92706 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.72 10.28 -34.54 -0.36 -4.08 16 3 C 0.08 0.99 6.70 -39.12 -0.26 0.73 16 4 C -0.15 -1.83 9.03 -39.48 -0.36 -2.19 16 5 C -0.12 -1.60 8.69 -39.38 -0.34 -1.94 16 6 C 0.16 2.03 6.30 -83.64 -0.53 1.51 16 7 N -0.68 -8.25 5.34 -9.84 -0.05 -8.31 16 8 C 0.51 8.13 7.71 -10.98 -0.08 8.05 16 9 O -0.50 -9.71 13.64 5.55 0.08 -9.63 16 10 C 0.05 0.76 5.97 -4.97 -0.03 0.73 16 11 N -0.67 -14.53 5.93 -109.22 -0.65 -15.17 16 12 C 0.21 5.28 2.60 -68.87 -0.18 5.10 16 13 H 0.00 0.07 7.80 -51.93 -0.41 -0.34 16 14 C -0.13 -3.07 9.19 37.16 0.34 -2.72 16 15 C -0.52 -14.20 8.59 -34.44 -0.30 -14.50 16 16 H 0.06 1.69 7.62 -52.49 -0.40 1.29 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -25.05 11.32 55.43 0.63 -24.42 16 19 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.20 -2.27 8.95 -39.27 -0.35 -2.62 16 24 C 0.12 1.43 6.70 -39.14 -0.26 1.17 16 25 O -0.31 -3.57 10.28 -34.31 -0.35 -3.93 16 26 C 0.03 0.19 9.81 101.05 0.99 1.18 16 27 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.14 1.33 6.29 -52.49 -0.33 1.00 16 31 H 0.15 2.26 6.22 -52.48 -0.33 1.93 16 32 H 0.41 3.53 8.82 -40.82 -0.36 3.17 16 33 H 0.10 1.50 7.43 -51.93 -0.39 1.11 16 34 H 0.05 0.82 8.06 -51.93 -0.42 0.40 16 35 H 0.34 7.60 7.92 -39.29 -0.31 7.29 16 36 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.14 1.17 6.29 -52.49 -0.33 0.84 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.32 7.65 -51.93 -0.40 -0.07 16 43 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -33.01 356.35 -6.78 -39.79 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.96 Total: 6.87 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -0.46 Total: -2.72 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.07 Total: -47.90 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.63 Total: -17.64 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.01 -6.78 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.125 kcal (2) G-P(sol) polarization free energy of solvation -33.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds