Wall clock time and date at job start Tue Mar 31 2020 09:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36064 * 117.00330 * 2 1 4 4 C 1.38559 * 120.00051 * 0.02562 * 3 2 1 5 5 C 1.38188 * 120.06945 * 179.97438 * 4 3 2 6 6 C 1.38842 * 120.07161 * 0.04625 * 5 4 3 7 7 N 1.40102 * 119.99549 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00011 * 35.09133 * 7 6 5 9 9 O 1.21287 * 120.00079 * 355.38438 * 8 7 6 10 10 C 1.50695 * 119.99865 * 175.38763 * 8 7 6 11 11 N 1.46902 * 109.47292 * 179.97438 * 10 8 7 12 12 C 1.46896 * 111.00450 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.46855 * 35.00111 * 12 11 10 14 14 C 1.53001 * 109.47199 * 275.00099 * 12 11 10 15 15 C 1.50692 * 109.47378 * 154.99936 * 12 11 10 16 16 H 1.08005 * 119.99940 * 359.97438 * 15 12 11 17 17 C 1.37879 * 120.00502 * 180.02562 * 15 12 11 18 18 N 1.31511 * 120.00402 * 180.02562 * 17 15 12 19 19 Si 1.86800 * 119.99492 * 359.97438 * 17 15 12 20 20 H 1.48502 * 109.47269 * 270.00347 * 19 17 15 21 21 H 1.48498 * 109.47125 * 30.00311 * 19 17 15 22 22 H 1.48500 * 109.47126 * 150.00286 * 19 17 15 23 23 C 1.38815 * 120.01039 * 0.22967 * 6 5 4 24 24 C 1.38501 * 119.92698 * 359.46904 * 23 6 5 25 25 O 1.35991 * 120.03854 * 180.27824 * 24 23 6 26 26 C 1.42906 * 116.99813 * 0.27348 * 25 24 23 27 27 H 1.08998 * 109.46966 * 299.99665 * 1 2 3 28 28 H 1.09000 * 109.47408 * 59.99949 * 1 2 3 29 29 H 1.09005 * 109.47429 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.96775 * 0.02562 * 4 3 2 31 31 H 1.07994 * 119.96412 * 180.02562 * 5 4 3 32 32 H 0.97002 * 119.99884 * 215.09267 * 7 6 5 33 33 H 1.08995 * 109.47675 * 59.99504 * 10 8 7 34 34 H 1.09001 * 109.47193 * 299.99659 * 10 8 7 35 35 H 1.00895 * 110.99769 * 303.95551 * 11 10 8 36 36 H 1.09008 * 109.46957 * 59.99776 * 14 12 11 37 37 H 1.08998 * 109.47096 * 179.97438 * 14 12 11 38 38 H 1.08996 * 109.46922 * 299.99785 * 14 12 11 39 39 H 0.97006 * 119.99841 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.03773 * 179.74963 * 23 6 5 41 41 H 1.09000 * 109.47205 * 300.00470 * 26 25 24 42 42 H 1.08998 * 109.46643 * 60.00437 * 26 25 24 43 43 H 1.08995 * 109.46945 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2921 2.3744 0.0005 5 6 1.9181 3.6064 0.0011 6 6 3.3044 3.6824 0.0001 7 7 3.9374 4.9323 0.0001 8 6 3.3903 5.9647 0.6719 9 8 2.3092 5.8357 1.2063 10 6 4.1218 7.2793 0.7589 11 7 3.3220 8.2342 1.5376 12 6 4.0057 9.5300 1.6442 13 1 4.5507 9.7301 0.7217 14 6 4.9860 9.4943 2.8183 15 6 2.9880 10.6177 1.8724 16 1 1.9382 10.3711 1.9318 17 6 3.3969 11.9278 2.0042 18 7 2.5088 12.8770 2.2038 19 14 5.2126 12.3544 1.9006 20 1 5.8143 12.2905 3.2568 21 1 5.8986 11.3854 1.0087 22 1 5.3684 13.7263 1.3541 23 6 4.0635 2.5201 -0.0062 24 6 3.4363 1.2853 -0.0004 25 8 4.1778 0.1452 -0.0009 26 6 5.5989 0.2956 -0.0014 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2136 2.3173 0.0014 31 1 1.3283 4.5111 0.0019 32 1 4.7694 5.0546 -0.4834 33 1 4.2818 7.6733 -0.2447 34 1 5.0844 7.1278 1.2474 35 1 2.4008 8.3426 1.1405 36 1 5.7222 8.7075 2.6532 37 1 5.4937 10.4557 2.8971 38 1 4.4410 9.2942 3.7407 39 1 2.7966 13.7987 2.2970 40 1 5.1418 2.5787 -0.0111 41 1 5.9058 0.8450 -0.8914 42 1 5.9064 0.8446 0.8886 43 1 6.0683 -0.6881 -0.0013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:32 Heat of formation + Delta-G solvation = -61.942181 kcal Electronic energy + Delta-G solvation = -24779.951162 eV Core-core repulsion = 21020.001083 eV Total energy + Delta-G solvation = -3759.950078 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.96872 -39.78613 -38.62882 -37.14253 -35.85928 -34.26618 -32.51124 -30.53158 -30.39501 -29.47313 -27.48474 -27.29611 -25.83619 -24.77518 -22.77389 -22.17712 -20.44970 -19.95184 -18.82416 -17.89109 -17.57535 -16.77111 -16.40712 -16.21949 -16.05601 -15.59715 -15.45659 -15.03885 -14.79919 -14.71336 -13.99874 -13.78649 -13.60390 -13.23277 -12.95510 -12.90761 -12.75582 -12.40933 -12.21423 -12.05369 -11.72541 -11.57388 -11.41819 -11.34419 -11.24164 -10.98365 -10.70747 -10.16730 -9.94552 -9.64320 -9.51667 -9.09027 -8.78205 -8.65261 -7.68923 -7.60759 -6.13247 -4.13914 1.04407 1.26231 2.68065 2.89523 3.05290 3.14166 3.23171 3.30545 3.34532 3.58628 4.33825 4.54785 4.72405 4.79799 4.82437 4.88790 4.96460 5.00879 5.06215 5.08787 5.15674 5.20506 5.21532 5.28115 5.32372 5.58321 5.59406 5.63483 6.13530 6.16769 6.26598 6.29122 6.44901 6.60540 6.67900 6.70817 6.81692 7.29604 7.31610 7.38068 7.50226 7.81593 8.18180 8.27881 8.54784 8.92250 9.47551 10.99677 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.027596 B = 0.002520 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.397137 B =11108.070964 C =11928.994554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.079 3.921 4 C -0.152 4.152 5 C -0.116 4.116 6 C 0.157 3.843 7 N -0.680 5.680 8 C 0.513 3.487 9 O -0.500 6.500 10 C 0.042 3.958 11 N -0.662 5.662 12 C 0.184 3.816 13 H 0.003 0.997 14 C -0.139 4.139 15 C -0.522 4.522 16 H 0.081 0.919 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.269 1.269 22 H -0.297 1.297 23 C -0.202 4.202 24 C 0.115 3.885 25 O -0.306 6.306 26 C 0.026 3.974 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.138 0.862 31 H 0.147 0.853 32 H 0.409 0.591 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.351 0.649 36 H 0.025 0.975 37 H 0.038 0.962 38 H 0.060 0.940 39 H 0.265 0.735 40 H 0.138 0.862 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.625 -25.347 -8.116 27.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.033 3.967 4 C -0.171 4.171 5 C -0.136 4.136 6 C 0.062 3.938 7 N -0.327 5.327 8 C 0.301 3.699 9 O -0.372 6.372 10 C -0.091 4.091 11 N -0.296 5.296 12 C 0.075 3.925 13 H 0.020 0.980 14 C -0.197 4.197 15 C -0.560 4.560 16 H 0.099 0.901 17 C -0.131 4.131 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.204 1.204 21 H -0.194 1.194 22 H -0.225 1.225 23 C -0.223 4.223 24 C 0.069 3.931 25 O -0.219 6.219 26 C -0.069 4.069 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.156 0.844 31 H 0.164 0.836 32 H 0.245 0.755 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.170 0.830 36 H 0.044 0.956 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.155 0.845 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.062 -25.764 -7.051 27.019 hybrid contribution 1.375 1.102 -1.043 2.048 sum 5.436 -24.662 -8.094 26.519 Atomic orbital electron populations 1.23052 0.78700 1.03788 1.01351 1.86149 1.20882 1.25887 1.89416 1.18202 0.89022 0.85253 1.04188 1.20997 1.00090 0.90901 1.05122 1.21089 0.93101 0.98392 1.01048 1.17374 0.91615 0.84323 1.00449 1.43642 1.27660 1.08662 1.52760 1.21204 0.86415 0.85493 0.76809 1.90695 1.20434 1.82321 1.43700 1.21851 0.98403 0.90364 0.98472 1.60295 1.05579 1.10884 1.52853 1.19569 0.93622 0.86122 0.93151 0.97995 1.22100 0.98117 0.98019 1.01450 1.21073 0.94533 0.90006 1.50375 0.90142 1.24934 0.97530 0.96227 0.94380 1.69889 1.33713 1.00754 1.49016 0.86793 0.85902 0.76741 0.78321 1.20439 1.19414 1.22490 1.20719 1.00101 0.90142 1.11324 1.17859 0.88107 0.85451 1.01653 1.86177 1.18616 1.28040 1.89101 1.23065 0.78769 1.03806 1.01293 0.92636 0.92748 0.88364 0.84407 0.83572 0.75542 0.92701 0.88495 0.82962 0.95634 0.94310 0.92095 0.92493 0.84477 0.92726 0.92649 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.65 10.28 -34.54 -0.36 -4.00 16 3 C 0.08 0.98 6.70 -39.12 -0.26 0.72 16 4 C -0.15 -1.78 9.03 -39.48 -0.36 -2.14 16 5 C -0.12 -1.54 8.69 -39.38 -0.34 -1.88 16 6 C 0.16 1.94 6.30 -83.64 -0.53 1.42 16 7 N -0.68 -7.74 5.34 -9.84 -0.05 -7.80 16 8 C 0.51 7.70 7.71 -10.99 -0.08 7.61 16 9 O -0.50 -9.35 13.64 5.55 0.08 -9.27 16 10 C 0.04 0.65 5.97 -4.98 -0.03 0.62 16 11 N -0.66 -13.58 5.93 -109.23 -0.65 -14.23 16 12 C 0.18 4.25 2.19 -68.87 -0.15 4.10 16 13 H 0.00 0.06 6.86 -51.93 -0.36 -0.30 16 14 C -0.14 -3.03 8.89 37.16 0.33 -2.70 16 15 C -0.52 -14.50 9.17 -34.44 -0.32 -14.82 16 16 H 0.08 2.44 7.86 -52.48 -0.41 2.03 16 17 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 18 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 19 Si 0.89 21.54 24.37 -169.99 -4.14 17.40 16 20 H -0.28 -6.57 6.87 56.52 0.39 -6.18 16 21 H -0.27 -6.13 6.53 56.52 0.37 -5.76 16 22 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 23 C -0.20 -2.17 8.95 -39.27 -0.35 -2.53 16 24 C 0.12 1.39 6.70 -39.14 -0.26 1.13 16 25 O -0.31 -3.47 10.28 -34.31 -0.35 -3.83 16 26 C 0.03 0.18 9.81 101.05 0.99 1.17 16 27 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 28 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.14 1.30 6.29 -52.49 -0.33 0.97 16 31 H 0.15 2.15 6.22 -52.49 -0.33 1.82 16 32 H 0.41 3.18 8.82 -40.82 -0.36 2.82 16 33 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.10 1.34 7.44 -51.93 -0.39 0.95 16 35 H 0.35 7.52 7.93 -39.29 -0.31 7.21 16 36 H 0.02 0.46 7.45 -51.92 -0.39 0.08 16 37 H 0.04 0.87 3.27 -51.93 -0.17 0.70 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.14 1.10 6.29 -52.49 -0.33 0.77 16 41 H 0.05 0.30 7.65 -51.93 -0.40 -0.09 16 42 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 349.54 15.07 5.27 5.27 Total: -1.00 -34.54 349.54 -5.73 -40.27 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -5.83 Total: 6.73 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -0.47 Total: -4.17 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.07 Total: -48.39 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.63 Total: -17.10 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.40 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.54 -5.73 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.675 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds