Wall clock time and date at job start Tue Mar 31 2020 10:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47063 * 2 1 4 4 C 1.46491 * 119.99933 * 90.00230 * 3 2 1 5 5 C 1.50702 * 109.46957 * 269.99541 * 4 3 2 6 6 O 1.21293 * 120.00255 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99928 * 179.72354 * 5 4 3 8 8 C 1.37101 * 120.00327 * 180.27606 * 7 5 4 9 9 H 1.08001 * 119.99426 * 0.02562 * 8 7 5 10 10 C 1.38942 * 120.00412 * 180.02562 * 8 7 5 11 11 N 1.31414 * 120.00005 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00325 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46989 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46903 * 119.99798 * 12 10 8 15 15 H 1.48498 * 109.47416 * 240.00213 * 12 10 8 16 16 C 1.39922 * 119.99856 * 269.99893 * 3 2 1 17 17 C 1.38874 * 120.00211 * 0.02562 * 16 3 2 18 18 C 1.38206 * 120.07115 * 179.97438 * 17 16 3 19 19 C 1.38536 * 120.06827 * 0.02562 * 18 17 16 20 20 O 1.36096 * 119.99780 * 179.97438 * 19 18 17 21 21 C 1.42902 * 117.00071 * 0.02562 * 20 19 18 22 22 C 1.39137 * 120.00471 * 359.97438 * 19 18 17 23 23 O 1.35996 * 120.03584 * 180.02562 * 22 19 18 24 24 C 1.42900 * 116.99953 * 179.97438 * 23 22 19 25 25 C 1.38521 * 119.93190 * 359.77057 * 22 19 18 26 26 H 1.09001 * 109.47124 * 300.00212 * 1 2 3 27 27 H 1.09003 * 109.47385 * 59.99974 * 1 2 3 28 28 H 1.09004 * 109.47060 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46627 * 239.99921 * 2 1 3 30 30 H 1.08996 * 109.47063 * 120.00213 * 2 1 3 31 31 H 1.09004 * 109.47166 * 149.99806 * 4 3 2 32 32 H 1.08994 * 109.47507 * 29.99513 * 4 3 2 33 33 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 34 34 H 0.96996 * 120.00330 * 179.97438 * 11 10 8 35 35 H 1.07998 * 119.96418 * 359.97438 * 17 16 3 36 36 H 1.07988 * 119.96502 * 179.97438 * 18 17 16 37 37 H 1.09004 * 109.46739 * 299.99870 * 21 20 19 38 38 H 1.09006 * 109.47433 * 59.98940 * 21 20 19 39 39 H 1.08996 * 109.47669 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47027 * 180.02562 * 24 23 22 41 41 H 1.08998 * 109.47031 * 300.00083 * 24 23 22 42 42 H 1.09001 * 109.46987 * 60.00604 * 24 23 22 43 43 H 1.07994 * 120.03784 * 180.25588 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 1.0067 2.7822 1.7037 6 8 0.0060 2.7177 1.0213 7 7 0.9937 3.4844 2.8540 8 6 -0.1504 4.1261 3.2527 9 1 -1.0414 4.0685 2.6450 10 6 -0.1636 4.8503 4.4383 11 7 0.9207 4.9207 5.1774 12 14 -1.7222 5.7252 4.9811 13 1 -2.7946 5.4924 3.9805 14 1 -2.1531 5.1960 6.3000 15 1 -1.4582 7.1821 5.0945 16 6 2.2515 2.0408 -1.2118 17 6 2.0196 1.3863 -2.4145 18 6 2.2490 2.0366 -3.6122 19 6 2.7113 3.3425 -3.6156 20 8 2.9371 3.9814 -4.7959 21 6 2.6757 3.2452 -5.9924 22 6 2.9446 4.0011 -2.4124 23 8 3.3979 5.2833 -2.4149 24 6 3.6150 5.8972 -1.1429 25 6 2.7097 3.3512 -1.2118 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.0645 2.7984 1.1383 32 1 2.5506 1.3452 2.0283 33 1 1.7939 3.5358 3.3999 34 1 0.9117 5.4266 6.0050 35 1 1.6596 0.3681 -2.4138 36 1 2.0684 1.5259 -4.5464 37 1 3.3045 2.3551 -6.0161 38 1 1.6267 2.9495 -6.0153 39 1 2.8960 3.8692 -6.8585 40 1 3.9746 6.9159 -1.2877 41 1 2.6786 5.9187 -0.5854 42 1 4.3568 5.3255 -0.5854 43 1 2.8864 3.8622 -0.2769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731211860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:40 Heat of formation + Delta-G solvation = -67.352905 kcal Electronic energy + Delta-G solvation = -26098.041865 eV Core-core repulsion = 22337.857160 eV Total energy + Delta-G solvation = -3760.184705 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.35970 -38.76246 -38.13874 -37.30630 -35.01787 -33.84812 -31.56267 -31.08869 -29.96667 -29.11442 -27.62456 -27.05143 -25.84869 -24.33529 -22.94846 -21.65783 -20.60435 -19.28271 -18.44086 -17.93849 -16.94417 -16.50108 -16.10213 -15.92756 -15.78608 -15.02632 -14.88335 -14.59237 -14.48950 -14.36237 -13.75420 -13.61486 -13.28657 -13.12409 -12.70146 -12.44719 -12.38521 -12.22857 -11.89214 -11.75118 -11.56543 -11.27304 -11.17933 -11.04470 -11.01109 -10.94934 -10.85950 -10.43866 -10.36572 -10.25884 -9.52491 -9.21079 -8.41560 -8.05271 -7.99762 -6.67961 -6.44623 -3.86484 1.60442 1.91849 3.12943 3.24119 3.28788 3.33982 3.52605 3.58360 3.83776 4.07641 4.16386 4.93005 5.00461 5.09568 5.12077 5.21279 5.21530 5.29766 5.34719 5.43849 5.48118 5.53011 5.57961 5.62348 5.66181 5.72575 5.73919 5.76691 5.86184 5.98718 6.18598 6.23733 6.32955 6.48182 6.57499 6.80304 6.87193 7.28627 7.51588 7.54186 7.70046 7.92797 8.02514 8.57313 9.14566 9.49473 10.00987 10.71643 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015237 B = 0.004056 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.243579 B = 6901.283601 C = 7944.509764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.127 3.873 3 N -0.599 5.599 4 C 0.110 3.890 5 C 0.417 3.583 6 O -0.573 6.573 7 N -0.564 5.564 8 C -0.297 4.297 9 H 0.102 0.898 10 C 0.023 3.977 11 N -0.901 5.901 12 Si 0.927 3.073 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.281 1.281 16 C 0.246 3.754 17 C -0.200 4.200 18 C -0.123 4.123 19 C 0.027 3.973 20 O -0.314 6.314 21 C 0.031 3.969 22 C 0.148 3.852 23 O -0.309 6.309 24 C 0.026 3.974 25 C -0.244 4.244 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.391 0.609 34 H 0.271 0.729 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.276 -6.531 -13.243 16.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.308 5.308 4 C -0.018 4.018 5 C 0.201 3.799 6 O -0.457 6.457 7 N -0.201 5.201 8 C -0.427 4.427 9 H 0.120 0.880 10 C -0.178 4.178 11 N -0.543 5.543 12 Si 0.754 3.246 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.207 1.207 16 C 0.143 3.857 17 C -0.223 4.223 18 C -0.143 4.143 19 C -0.018 4.018 20 O -0.228 6.228 21 C -0.065 4.065 22 C 0.102 3.898 23 O -0.222 6.222 24 C -0.069 4.069 25 C -0.268 4.268 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.224 0.776 34 H 0.081 0.919 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.712 -6.256 -13.546 16.361 hybrid contribution -0.518 0.312 1.043 1.205 sum 6.195 -5.943 -12.503 15.166 Atomic orbital electron populations 1.22239 0.95733 1.00194 1.04591 1.21357 0.94891 0.81760 1.01584 1.46109 1.70314 1.12490 1.01880 1.21236 0.97082 0.97376 0.86063 1.20567 0.90638 0.84933 0.83736 1.90535 1.35043 1.65015 1.55062 1.41919 1.13904 1.44725 1.19562 1.19727 0.91609 1.26298 1.05074 0.87990 1.25237 0.98505 0.97941 0.96155 1.69610 1.27736 1.42183 1.14721 0.85837 0.81382 0.78815 0.78553 1.19276 1.20754 1.20719 1.17372 0.92101 0.90437 0.85835 1.20301 1.10747 1.01002 0.90212 1.20673 1.02161 0.92915 0.98529 1.17878 1.07951 0.92058 0.83945 1.86128 1.84194 1.40715 1.11773 1.22914 1.00320 0.97210 0.86017 1.17917 0.96848 0.84103 0.90952 1.86121 1.80668 1.24039 1.31364 1.23064 1.01457 0.97952 0.84465 1.20542 1.13645 0.95750 0.96813 0.90524 0.92494 0.93395 0.91201 0.91307 0.89621 0.89297 0.77571 0.91915 0.85783 0.85356 0.93331 0.93252 0.88950 0.88470 0.92195 0.92826 0.84767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 9.50 37.16 0.35 -2.28 16 2 C 0.13 1.75 5.92 -4.04 -0.02 1.72 16 3 N -0.60 -9.73 2.17 -173.09 -0.37 -10.11 16 4 C 0.11 1.86 5.68 -5.20 -0.03 1.83 16 5 C 0.42 9.33 7.76 -10.98 -0.09 9.24 16 6 O -0.57 -14.81 13.60 5.55 0.08 -14.73 16 7 N -0.56 -13.66 5.29 -10.96 -0.06 -13.72 16 8 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 9 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 10 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 11 N -0.90 -23.92 13.05 55.50 0.72 -23.20 16 12 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 13 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 16 C 0.25 4.13 6.55 -83.71 -0.55 3.58 16 17 C -0.20 -2.98 9.21 -39.36 -0.36 -3.34 16 18 C -0.12 -1.75 9.03 -39.48 -0.36 -2.11 16 19 C 0.03 0.45 6.70 -39.14 -0.26 0.18 16 20 O -0.31 -4.79 10.28 -34.65 -0.36 -5.15 16 21 C 0.03 0.31 9.81 101.05 0.99 1.30 16 22 C 0.15 2.58 6.70 -39.14 -0.26 2.31 16 23 O -0.31 -5.21 10.28 -34.34 -0.35 -5.56 16 24 C 0.03 0.35 9.81 101.05 0.99 1.34 16 25 C -0.24 -4.24 8.19 -39.26 -0.32 -4.56 16 26 H 0.08 1.48 6.39 -51.93 -0.33 1.15 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.81 6.20 -51.93 -0.32 0.49 16 30 H 0.07 0.83 7.89 -51.93 -0.41 0.42 16 31 H 0.09 1.32 6.21 -51.93 -0.32 1.00 16 32 H 0.09 1.29 7.89 -51.93 -0.41 0.88 16 33 H 0.39 9.03 7.90 -40.82 -0.32 8.71 16 34 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.12 1.60 6.13 -52.49 -0.32 1.28 16 36 H 0.13 1.42 6.29 -52.49 -0.33 1.09 16 37 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 38 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 0.88 7.65 -51.93 -0.40 0.49 16 42 H 0.05 0.66 7.67 -51.93 -0.40 0.26 16 43 H 0.13 2.30 4.38 -52.49 -0.23 2.07 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -32.53 353.53 -5.99 -38.52 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -5.79 Total: 11.29 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -0.16 Total: 1.52 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.29 Total: -47.03 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.63 Total: -25.44 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.53 -5.99 -38.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731211860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.831 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds