Wall clock time and date at job start Tue Mar 31 2020 10:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47063 * 2 1 4 4 C 1.46491 * 119.99933 * 90.00230 * 3 2 1 5 5 C 1.50702 * 109.46957 * 269.99541 * 4 3 2 6 6 O 1.21293 * 120.00255 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99928 * 179.72354 * 5 4 3 8 8 C 1.37101 * 120.00327 * 180.27606 * 7 5 4 9 9 H 1.08001 * 119.99426 * 0.02562 * 8 7 5 10 10 C 1.38942 * 120.00412 * 180.02562 * 8 7 5 11 11 N 1.31414 * 120.00005 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00325 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46989 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46903 * 119.99798 * 12 10 8 15 15 H 1.48498 * 109.47416 * 240.00213 * 12 10 8 16 16 C 1.39922 * 119.99856 * 269.99893 * 3 2 1 17 17 C 1.38874 * 120.00211 * 0.02562 * 16 3 2 18 18 C 1.38206 * 120.07115 * 179.97438 * 17 16 3 19 19 C 1.38536 * 120.06827 * 0.02562 * 18 17 16 20 20 O 1.36096 * 119.99780 * 179.97438 * 19 18 17 21 21 C 1.42902 * 117.00071 * 0.02562 * 20 19 18 22 22 C 1.39137 * 120.00471 * 359.97438 * 19 18 17 23 23 O 1.35996 * 120.03584 * 180.02562 * 22 19 18 24 24 C 1.42900 * 116.99953 * 179.97438 * 23 22 19 25 25 C 1.38521 * 119.93190 * 359.77057 * 22 19 18 26 26 H 1.09001 * 109.47124 * 300.00212 * 1 2 3 27 27 H 1.09003 * 109.47385 * 59.99974 * 1 2 3 28 28 H 1.09004 * 109.47060 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46627 * 239.99921 * 2 1 3 30 30 H 1.08996 * 109.47063 * 120.00213 * 2 1 3 31 31 H 1.09004 * 109.47166 * 149.99806 * 4 3 2 32 32 H 1.08994 * 109.47507 * 29.99513 * 4 3 2 33 33 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 34 34 H 0.96996 * 120.00330 * 179.97438 * 11 10 8 35 35 H 1.07998 * 119.96418 * 359.97438 * 17 16 3 36 36 H 1.07988 * 119.96502 * 179.97438 * 18 17 16 37 37 H 1.09004 * 109.46739 * 299.99870 * 21 20 19 38 38 H 1.09006 * 109.47433 * 59.98940 * 21 20 19 39 39 H 1.08996 * 109.47669 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47027 * 180.02562 * 24 23 22 41 41 H 1.08998 * 109.47031 * 300.00083 * 24 23 22 42 42 H 1.09001 * 109.46987 * 60.00604 * 24 23 22 43 43 H 1.07994 * 120.03784 * 180.25588 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 1.0067 2.7822 1.7037 6 8 0.0060 2.7177 1.0213 7 7 0.9937 3.4844 2.8540 8 6 -0.1504 4.1261 3.2527 9 1 -1.0414 4.0685 2.6450 10 6 -0.1636 4.8503 4.4383 11 7 0.9207 4.9207 5.1774 12 14 -1.7222 5.7252 4.9811 13 1 -2.7946 5.4924 3.9805 14 1 -2.1531 5.1960 6.3000 15 1 -1.4582 7.1821 5.0945 16 6 2.2515 2.0408 -1.2118 17 6 2.0196 1.3863 -2.4145 18 6 2.2490 2.0366 -3.6122 19 6 2.7113 3.3425 -3.6156 20 8 2.9371 3.9814 -4.7959 21 6 2.6757 3.2452 -5.9924 22 6 2.9446 4.0011 -2.4124 23 8 3.3979 5.2833 -2.4149 24 6 3.6150 5.8972 -1.1429 25 6 2.7097 3.3512 -1.2118 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.0645 2.7984 1.1383 32 1 2.5506 1.3452 2.0283 33 1 1.7939 3.5358 3.3999 34 1 0.9117 5.4266 6.0050 35 1 1.6596 0.3681 -2.4138 36 1 2.0684 1.5259 -4.5464 37 1 3.3045 2.3551 -6.0161 38 1 1.6267 2.9495 -6.0153 39 1 2.8960 3.8692 -6.8585 40 1 3.9746 6.9159 -1.2877 41 1 2.6786 5.9187 -0.5854 42 1 4.3568 5.3255 -0.5854 43 1 2.8864 3.8622 -0.2769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731211860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:39 Heat of formation + Delta-G solvation = -88.711251 kcal Electronic energy + Delta-G solvation = -26098.968032 eV Core-core repulsion = 22337.857160 eV Total energy + Delta-G solvation = -3761.110872 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.55188 -40.30820 -39.27530 -38.75626 -36.32337 -35.71798 -33.32606 -32.51985 -31.11513 -30.41893 -28.83185 -28.02347 -27.31130 -25.99368 -24.13925 -22.84368 -21.92187 -20.91137 -19.93356 -19.55962 -18.09899 -17.80920 -17.70572 -17.17221 -16.93454 -16.59571 -16.08525 -16.06128 -15.75933 -15.56643 -15.36992 -15.12946 -14.74836 -14.37718 -13.86164 -13.79370 -13.60070 -13.52549 -13.37508 -13.07011 -12.99006 -12.86168 -12.41020 -12.34773 -12.31884 -12.15314 -12.14033 -12.00394 -11.99272 -11.63665 -11.40517 -10.59368 -10.00537 -9.97328 -9.34145 -8.47144 -7.88550 -5.93894 0.40853 0.69310 1.33994 1.39709 1.52642 2.06637 2.09452 2.30951 2.39295 2.57646 2.86869 3.20237 3.33006 3.82930 4.00538 4.15071 4.20540 4.26464 4.32637 4.35598 4.39070 4.46793 4.47989 4.50489 4.54576 4.55558 4.62662 4.67536 4.68984 4.80613 4.85949 5.03871 5.05510 5.29213 5.40196 5.41520 5.56861 5.64727 5.97505 6.15224 6.33877 6.52883 6.63063 6.78453 7.15102 7.58593 8.14909 8.70812 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.015237 B = 0.004056 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.243579 B = 6901.283601 C = 7944.509764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.123 3.877 3 N -0.603 5.603 4 C 0.119 3.881 5 C 0.419 3.581 6 O -0.610 6.610 7 N -0.574 5.574 8 C -0.327 4.327 9 H 0.073 0.927 10 C -0.010 4.010 11 N -0.918 5.918 12 Si 0.986 3.014 13 H -0.277 1.277 14 H -0.270 1.270 15 H -0.272 1.272 16 C 0.224 3.776 17 C -0.197 4.197 18 C -0.116 4.116 19 C 0.017 3.983 20 O -0.338 6.338 21 C 0.021 3.979 22 C 0.123 3.877 23 O -0.325 6.325 24 C 0.025 3.975 25 C -0.260 4.260 26 H 0.032 0.968 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.120 0.880 33 H 0.396 0.604 34 H 0.277 0.723 35 H 0.148 0.852 36 H 0.163 0.837 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.113 0.887 40 H 0.123 0.877 41 H 0.039 0.961 42 H 0.064 0.936 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.987 -7.918 -14.211 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.001 3.999 3 N -0.312 5.312 4 C -0.008 4.008 5 C 0.205 3.795 6 O -0.495 6.495 7 N -0.212 5.212 8 C -0.457 4.457 9 H 0.091 0.909 10 C -0.210 4.210 11 N -0.560 5.560 12 Si 0.810 3.190 13 H -0.202 1.202 14 H -0.196 1.196 15 H -0.197 1.197 16 C 0.122 3.878 17 C -0.219 4.219 18 C -0.135 4.135 19 C -0.029 4.029 20 O -0.253 6.253 21 C -0.074 4.074 22 C 0.077 3.923 23 O -0.239 6.239 24 C -0.070 4.070 25 C -0.283 4.283 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.138 0.862 33 H 0.230 0.770 34 H 0.086 0.914 35 H 0.166 0.834 36 H 0.181 0.819 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.131 0.869 40 H 0.142 0.858 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.447 -7.657 -14.525 18.030 hybrid contribution -0.750 0.719 1.202 1.589 sum 6.697 -6.939 -13.323 16.447 Atomic orbital electron populations 1.22140 0.97436 1.01089 1.01283 1.21598 0.93314 0.80847 1.04125 1.46258 1.70458 1.13225 1.01269 1.21187 0.94128 0.98139 0.87386 1.21650 0.91994 0.83515 0.82323 1.90513 1.37212 1.65921 1.55900 1.41957 1.13325 1.45423 1.20531 1.19593 0.91995 1.28314 1.05771 0.90858 1.25911 1.01282 0.98071 0.95719 1.69660 1.28875 1.42458 1.14980 0.84977 0.77813 0.78123 0.78077 1.20229 1.19557 1.19707 1.17652 0.92773 0.90563 0.86817 1.20625 1.09644 1.01967 0.89665 1.21051 1.00571 0.92139 0.99781 1.18157 1.07797 0.92783 0.84167 1.86095 1.84318 1.42226 1.12669 1.23257 1.01344 0.98175 0.84617 1.18242 0.97895 0.84459 0.91746 1.86086 1.80848 1.24194 1.32787 1.23206 1.00791 0.99416 0.83596 1.20576 1.14675 0.96384 0.96665 0.94920 0.94540 0.90374 0.88203 0.89156 0.88120 0.86205 0.77047 0.91390 0.83426 0.81925 0.91541 0.92319 0.86894 0.85840 0.94217 0.91716 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.85 9.50 71.98 0.68 -4.16 16 2 C 0.12 3.07 5.92 86.38 0.51 3.58 16 3 N -0.60 -18.81 2.17 -701.52 -1.52 -20.32 16 4 C 0.12 3.95 5.68 85.64 0.49 4.43 16 5 C 0.42 19.17 7.76 87.66 0.68 19.85 16 6 O -0.61 -32.71 13.60 -3.07 -0.04 -32.75 16 7 N -0.57 -28.58 5.29 -306.98 -1.62 -30.21 16 8 C -0.33 -18.35 9.68 84.04 0.81 -17.54 16 9 H 0.07 4.47 7.16 -2.91 -0.02 4.45 16 10 C -0.01 -0.53 5.50 84.92 0.47 -0.06 16 11 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 12 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 14 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 15 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 16 C 0.22 7.35 6.55 38.14 0.25 7.60 16 17 C -0.20 -5.44 9.21 22.41 0.21 -5.23 16 18 C -0.12 -3.04 9.03 22.33 0.20 -2.83 16 19 C 0.02 0.54 6.70 22.56 0.15 0.69 16 20 O -0.34 -9.96 10.28 -80.67 -0.83 -10.79 16 21 C 0.02 0.36 9.81 113.37 1.11 1.47 16 22 C 0.12 4.32 6.70 22.55 0.15 4.47 16 23 O -0.33 -11.22 10.28 -79.53 -0.82 -12.04 16 24 C 0.02 0.68 9.81 113.37 1.11 1.79 16 25 C -0.26 -9.11 8.19 22.48 0.18 -8.93 16 26 H 0.03 1.26 6.39 -2.39 -0.02 1.25 16 27 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.10 1.92 6.20 -2.39 -0.01 1.90 16 30 H 0.09 1.89 7.89 -2.39 -0.02 1.87 16 31 H 0.10 3.05 6.21 -2.38 -0.01 3.04 16 32 H 0.12 3.24 7.89 -2.39 -0.02 3.22 16 33 H 0.40 18.62 7.90 -92.71 -0.73 17.89 16 34 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 35 H 0.15 3.29 6.13 -2.91 -0.02 3.27 16 36 H 0.16 2.99 6.29 -2.92 -0.02 2.97 16 37 H 0.07 0.93 7.66 -2.38 -0.02 0.91 16 38 H 0.06 0.92 7.66 -2.38 -0.02 0.90 16 39 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.04 1.24 7.65 -2.39 -0.02 1.22 16 42 H 0.06 1.61 7.67 -2.39 -0.02 1.60 16 43 H 0.13 4.46 4.38 -2.91 -0.01 4.44 16 Total: -1.00 -73.17 353.53 4.81 -68.36 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: 0.32 Total: 36.07 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 7.01 Total: 5.13 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -2.86 Total: -99.08 kcal Atomic # 8 Polarization: -53.89 SS G_CDS: -1.69 Total: -55.58 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -73.17 4.81 -68.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731211860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.348 kcal (2) G-P(sol) polarization free energy of solvation -73.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds