Wall clock time and date at job start Tue Mar 31 2020 09:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47530 * 2 1 4 4 C 1.50707 * 109.46776 * 120.00044 * 2 1 3 5 5 O 1.20825 * 119.99749 * 120.00002 * 4 2 1 6 6 O 1.34225 * 120.00017 * 299.99520 * 4 2 1 7 7 C 1.45196 * 117.00150 * 180.02562 * 6 4 2 8 8 C 1.50694 * 109.47239 * 180.02562 * 7 6 4 9 9 O 1.21277 * 120.00272 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00112 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00145 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47385 * 90.00015 * 11 10 8 13 13 H 1.08004 * 119.99752 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00241 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99759 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99767 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47239 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47135 * 120.00362 * 16 14 12 19 19 H 1.48506 * 109.47016 * 239.99935 * 16 14 12 20 20 C 1.46500 * 119.99763 * 0.02562 * 10 8 7 21 21 C 1.52995 * 109.47679 * 90.00134 * 20 10 8 22 22 C 1.47196 * 109.47786 * 180.02562 * 21 20 10 23 23 N 8.51253 * 121.25255 * 120.99615 * 2 1 3 24 24 C 1.53001 * 109.47252 * 239.99683 * 2 1 3 25 25 C 1.53000 * 117.50223 * 180.02562 * 24 2 1 26 26 C 1.52997 * 117.49889 * 111.37590 * 24 2 1 27 27 H 1.08997 * 109.46835 * 60.00324 * 1 2 3 28 28 H 1.08994 * 109.46791 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46713 * 300.00166 * 1 2 3 30 30 H 1.08996 * 109.47177 * 300.00385 * 7 6 4 31 31 H 1.09006 * 109.46980 * 60.00189 * 7 6 4 32 32 H 1.09001 * 109.47169 * 210.00101 * 11 10 8 33 33 H 1.08997 * 109.47271 * 329.99633 * 11 10 8 34 34 H 0.97005 * 119.99674 * 180.02562 * 15 14 12 35 35 H 1.09007 * 109.47210 * 209.99760 * 20 10 8 36 36 H 1.08997 * 109.47512 * 329.99642 * 20 10 8 37 37 H 1.08999 * 109.47030 * 300.00346 * 21 20 10 38 38 H 1.09007 * 109.47061 * 59.99107 * 21 20 10 39 39 H 1.09002 * 115.55911 * 325.69018 * 24 2 1 40 40 H 1.08990 * 117.49990 * 145.01974 * 25 24 2 41 41 H 1.09004 * 117.49237 * 359.97438 * 25 24 2 42 42 H 1.08999 * 117.49685 * 0.02562 * 26 24 2 43 43 H 1.08999 * 117.52022 * 214.97106 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7269 -1.6929 1.1197 6 8 1.7081 -0.2518 2.4496 7 6 2.2276 -0.9857 3.5897 8 6 1.7626 -0.3292 4.8639 9 8 1.0627 0.6601 4.8160 10 7 2.1254 -0.8408 6.0569 11 6 1.6729 -0.2030 7.2956 12 6 0.3588 -0.8062 7.7204 13 1 -0.0942 -1.5864 7.1266 14 6 -0.2651 -0.3621 8.8669 15 7 0.2863 0.5883 9.5895 16 14 -1.8943 -1.1094 9.3928 17 1 -2.2997 -2.1510 8.4152 18 1 -1.7467 -1.7222 10.7373 19 1 -2.9321 -0.0483 9.4438 20 6 2.9723 -2.0349 6.1148 21 6 4.4437 -1.6162 6.1350 22 6 5.2946 -2.8159 6.1926 23 7 5.9465 -3.7477 6.2381 24 6 2.0401 -0.7213 -1.2492 25 6 3.5551 -0.8287 -1.4340 26 6 2.7419 0.1225 -2.3151 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8642 -2.0127 3.5569 31 1 3.3172 -0.9846 3.5566 32 1 2.4152 -0.3613 8.0780 33 1 1.5445 0.8663 7.1278 34 1 -0.1525 0.9005 10.3964 35 1 2.7428 -2.5996 7.0185 36 1 2.7836 -2.6570 5.2399 37 1 4.6732 -1.0514 5.2315 38 1 4.6324 -0.9940 7.0100 39 1 1.4311 -1.5584 -1.5905 40 1 3.9425 -1.7361 -1.8970 41 1 4.1884 -0.3851 -0.6657 42 1 2.8407 1.1914 -2.1262 43 1 2.5951 -0.1593 -3.3578 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748151492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:07 Heat of formation + Delta-G solvation = -73.000814 kcal Electronic energy + Delta-G solvation = -25130.224727 eV Core-core repulsion = 21369.795111 eV Total energy + Delta-G solvation = -3760.429616 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.78854 -39.29292 -37.82112 -36.86642 -36.13331 -35.26859 -32.98916 -32.75101 -30.92425 -29.30032 -26.81301 -25.07806 -24.10738 -23.07085 -22.58284 -22.07932 -20.07248 -18.86664 -17.78752 -17.71528 -16.91487 -16.51910 -16.43441 -16.11851 -15.66924 -15.15731 -14.91546 -14.75849 -14.52855 -14.24250 -13.75063 -13.29416 -13.19914 -12.80047 -12.69938 -12.51832 -12.47152 -12.16769 -12.12283 -12.01406 -11.80423 -11.75738 -11.34652 -11.34279 -11.06060 -10.96923 -10.78590 -10.70560 -10.62507 -10.36224 -10.23906 -10.22230 -9.75288 -9.14776 -8.52003 -7.97417 -6.13614 -4.18446 2.14901 2.35815 2.69037 2.78489 3.10653 3.25907 3.34317 3.37529 3.49240 3.72349 4.12102 4.22020 4.37854 4.50642 4.62395 4.77543 4.79442 4.85831 4.97858 5.00837 5.01568 5.13680 5.17221 5.22349 5.23579 5.39320 5.42319 5.54344 5.66370 5.69082 5.75037 5.83870 5.90085 5.99564 6.01707 6.35105 6.82275 7.25159 7.33168 7.55440 7.70245 7.82449 8.08425 8.11508 8.70771 8.88080 9.47379 10.94614 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.012394 B = 0.003587 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.638933 B = 7803.331965 C = 9530.463457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 H 0.110 0.890 4 C 0.462 3.538 5 O -0.503 6.503 6 O -0.328 6.328 7 C 0.046 3.954 8 C 0.509 3.491 9 O -0.509 6.509 10 N -0.592 5.592 11 C 0.246 3.754 12 C -0.531 4.531 13 H 0.060 0.940 14 C 0.063 3.937 15 N -0.893 5.893 16 Si 0.898 3.102 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.113 3.887 21 C -0.050 4.050 22 C 0.216 3.784 23 N -0.442 5.442 24 C -0.143 4.143 25 C -0.160 4.160 26 C -0.178 4.178 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.264 0.736 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.298 -0.948 -18.598 19.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 H 0.127 0.873 4 C 0.304 3.696 5 O -0.391 6.391 6 O -0.243 6.243 7 C -0.032 4.032 8 C 0.294 3.706 9 O -0.383 6.383 10 N -0.325 5.325 11 C 0.128 3.872 12 C -0.570 4.570 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.726 3.274 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.208 1.208 20 C -0.014 4.014 21 C -0.092 4.092 22 C -0.103 4.103 23 N -0.120 5.120 24 C -0.162 4.162 25 C -0.197 4.197 26 C -0.214 4.214 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.057 -1.973 -18.363 19.436 hybrid contribution -0.974 -0.266 0.505 1.128 sum 5.084 -2.239 -17.858 18.702 Atomic orbital electron populations 1.21768 0.91316 1.03163 1.03873 1.20597 0.98522 0.99939 0.87875 0.87253 1.23816 0.77618 0.83211 0.84939 1.90659 1.35470 1.25678 1.87263 1.86573 1.69032 1.54610 1.14103 1.22961 0.99960 0.96334 0.83927 1.19754 0.81768 0.85117 0.83987 1.90737 1.35983 1.25241 1.86388 1.48159 1.48993 1.28066 1.07325 1.19421 0.94959 0.94686 0.78169 1.21445 1.05909 1.21133 1.08483 0.92224 1.24915 0.97829 0.94910 0.96286 1.69927 1.39244 1.27975 1.15982 0.86445 0.83560 0.79132 0.78310 1.19767 1.20958 1.20833 1.21394 0.86657 0.88579 1.04735 1.19885 0.92928 0.89983 1.06399 1.29126 0.93761 0.94500 0.92871 1.81300 1.10263 1.11114 1.09280 1.22051 0.96334 1.01987 0.95779 1.22848 0.93260 1.01344 1.02212 1.23109 1.04403 0.97708 0.96225 0.90883 0.92008 0.90420 0.88593 0.88823 0.94319 0.93338 0.92648 0.88203 0.90646 0.87683 0.86203 0.87104 0.88609 0.88899 0.88586 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.11 37.16 0.34 -0.92 16 2 C -0.05 -0.48 2.98 -91.76 -0.27 -0.76 16 3 H 0.11 0.92 7.90 -51.93 -0.41 0.51 16 4 C 0.46 5.98 7.13 36.01 0.26 6.24 16 5 O -0.50 -7.27 14.83 -18.75 -0.28 -7.55 16 6 O -0.33 -4.92 9.66 -45.89 -0.44 -5.37 16 7 C 0.05 0.65 4.50 36.00 0.16 0.81 16 8 C 0.51 9.41 7.75 -10.99 -0.09 9.32 16 9 O -0.51 -11.85 16.08 -14.10 -0.23 -12.08 16 10 N -0.59 -10.59 2.46 -175.07 -0.43 -11.02 16 11 C 0.25 5.67 5.16 -5.20 -0.03 5.64 16 12 C -0.53 -13.91 9.39 -34.44 -0.32 -14.23 16 13 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -25.05 13.29 55.43 0.74 -24.32 16 16 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.11 1.47 5.17 -4.04 -0.02 1.44 16 21 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 22 C 0.22 2.63 15.44 -20.69 -0.32 2.31 16 23 N -0.44 -6.60 18.55 42.23 0.78 -5.82 16 24 C -0.14 -1.25 4.72 -90.62 -0.43 -1.68 16 25 C -0.16 -1.41 8.98 -26.71 -0.24 -1.65 16 26 C -0.18 -1.25 10.18 -26.71 -0.27 -1.52 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 30 H 0.10 1.25 7.40 -51.93 -0.38 0.86 16 31 H 0.09 1.09 7.18 -51.93 -0.37 0.71 16 32 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.10 1.37 8.07 -51.92 -0.42 0.95 16 36 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 37 H 0.11 0.89 7.22 -51.93 -0.38 0.51 16 38 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.11 0.94 8.11 -51.93 -0.42 0.52 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.90 8.10 -51.93 -0.42 0.47 16 42 H 0.10 0.60 8.05 -51.93 -0.42 0.19 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -33.44 376.61 -7.15 -40.60 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.44 Total: -1.95 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -1.51 Total: 5.90 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 1.09 Total: -41.15 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.95 Total: -25.00 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.44 -7.15 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748151492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.406 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds