Wall clock time and date at job start Tue Mar 31 2020 09:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47530 * 2 1 4 4 C 1.50707 * 109.46776 * 120.00044 * 2 1 3 5 5 O 1.20825 * 119.99749 * 120.00002 * 4 2 1 6 6 O 1.34225 * 120.00017 * 299.99520 * 4 2 1 7 7 C 1.45196 * 117.00150 * 180.02562 * 6 4 2 8 8 C 1.50694 * 109.47239 * 180.02562 * 7 6 4 9 9 O 1.21277 * 120.00272 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00112 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00145 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47385 * 90.00015 * 11 10 8 13 13 H 1.08004 * 119.99752 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00241 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99759 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99767 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47239 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47135 * 120.00362 * 16 14 12 19 19 H 1.48506 * 109.47016 * 239.99935 * 16 14 12 20 20 C 1.46500 * 119.99763 * 0.02562 * 10 8 7 21 21 C 1.52995 * 109.47679 * 90.00134 * 20 10 8 22 22 C 1.47196 * 109.47786 * 180.02562 * 21 20 10 23 23 N 8.51253 * 121.25255 * 120.99615 * 2 1 3 24 24 C 1.53001 * 109.47252 * 239.99683 * 2 1 3 25 25 C 1.53000 * 117.50223 * 180.02562 * 24 2 1 26 26 C 1.52997 * 117.49889 * 111.37590 * 24 2 1 27 27 H 1.08997 * 109.46835 * 60.00324 * 1 2 3 28 28 H 1.08994 * 109.46791 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46713 * 300.00166 * 1 2 3 30 30 H 1.08996 * 109.47177 * 300.00385 * 7 6 4 31 31 H 1.09006 * 109.46980 * 60.00189 * 7 6 4 32 32 H 1.09001 * 109.47169 * 210.00101 * 11 10 8 33 33 H 1.08997 * 109.47271 * 329.99633 * 11 10 8 34 34 H 0.97005 * 119.99674 * 180.02562 * 15 14 12 35 35 H 1.09007 * 109.47210 * 209.99760 * 20 10 8 36 36 H 1.08997 * 109.47512 * 329.99642 * 20 10 8 37 37 H 1.08999 * 109.47030 * 300.00346 * 21 20 10 38 38 H 1.09007 * 109.47061 * 59.99107 * 21 20 10 39 39 H 1.09002 * 115.55911 * 325.69018 * 24 2 1 40 40 H 1.08990 * 117.49990 * 145.01974 * 25 24 2 41 41 H 1.09004 * 117.49237 * 359.97438 * 25 24 2 42 42 H 1.08999 * 117.49685 * 0.02562 * 26 24 2 43 43 H 1.08999 * 117.52022 * 214.97106 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7269 -1.6929 1.1197 6 8 1.7081 -0.2518 2.4496 7 6 2.2276 -0.9857 3.5897 8 6 1.7626 -0.3292 4.8639 9 8 1.0627 0.6601 4.8160 10 7 2.1254 -0.8408 6.0569 11 6 1.6729 -0.2030 7.2956 12 6 0.3588 -0.8062 7.7204 13 1 -0.0942 -1.5864 7.1266 14 6 -0.2651 -0.3621 8.8669 15 7 0.2863 0.5883 9.5895 16 14 -1.8943 -1.1094 9.3928 17 1 -2.2997 -2.1510 8.4152 18 1 -1.7467 -1.7222 10.7373 19 1 -2.9321 -0.0483 9.4438 20 6 2.9723 -2.0349 6.1148 21 6 4.4437 -1.6162 6.1350 22 6 5.2946 -2.8159 6.1926 23 7 5.9465 -3.7477 6.2381 24 6 2.0401 -0.7213 -1.2492 25 6 3.5551 -0.8287 -1.4340 26 6 2.7419 0.1225 -2.3151 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8642 -2.0127 3.5569 31 1 3.3172 -0.9846 3.5566 32 1 2.4152 -0.3613 8.0780 33 1 1.5445 0.8663 7.1278 34 1 -0.1525 0.9005 10.3964 35 1 2.7428 -2.5996 7.0185 36 1 2.7836 -2.6570 5.2399 37 1 4.6732 -1.0514 5.2315 38 1 4.6324 -0.9940 7.0100 39 1 1.4311 -1.5584 -1.5905 40 1 3.9425 -1.7361 -1.8970 41 1 4.1884 -0.3851 -0.6657 42 1 2.8407 1.1914 -2.1262 43 1 2.5951 -0.1593 -3.3578 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748151492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:06 Heat of formation + Delta-G solvation = -91.160158 kcal Electronic energy + Delta-G solvation = -25131.012176 eV Core-core repulsion = 21369.795111 eV Total energy + Delta-G solvation = -3761.217065 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.84591 -40.67212 -38.63781 -38.00192 -37.18841 -36.68538 -34.88573 -33.51902 -32.23147 -30.69766 -28.45555 -25.92009 -25.38053 -24.61738 -23.26530 -23.00158 -20.91902 -20.26142 -18.92239 -18.79776 -18.38586 -17.98587 -17.61880 -17.36925 -16.85926 -16.29589 -16.03275 -15.85026 -15.65542 -15.52309 -14.89010 -14.54677 -14.44768 -14.04223 -13.81882 -13.60714 -13.59067 -13.46684 -13.21702 -13.14760 -12.95996 -12.77151 -12.72230 -12.54170 -12.35151 -12.19494 -12.05384 -12.03070 -11.73123 -11.64691 -11.58197 -11.05730 -10.97875 -10.67851 -10.58755 -9.57947 -8.18548 -6.30286 1.15484 1.28790 1.40350 1.43291 1.53250 1.57983 1.78095 1.80479 2.30682 2.45060 2.95195 3.07907 3.14371 3.52689 3.56508 3.71668 3.86554 3.94752 3.99319 4.08424 4.12637 4.16792 4.22055 4.34122 4.51522 4.54079 4.78735 4.84824 4.87717 4.95919 5.00587 5.05615 5.08281 5.21471 5.27680 5.29697 5.32685 5.41356 5.56739 5.83505 6.11233 6.54304 6.59291 6.71841 6.78986 7.25711 7.42446 8.88660 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.012394 B = 0.003587 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.638933 B = 7803.331965 C = 9530.463457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 H 0.123 0.877 4 C 0.461 3.539 5 O -0.519 6.519 6 O -0.348 6.348 7 C 0.053 3.947 8 C 0.506 3.494 9 O -0.567 6.567 10 N -0.590 5.590 11 C 0.260 3.740 12 C -0.542 4.542 13 H 0.054 0.946 14 C 0.013 3.987 15 N -0.924 5.924 16 Si 0.958 3.042 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.284 1.284 20 C 0.108 3.892 21 C -0.039 4.039 22 C 0.244 3.756 23 N -0.488 5.488 24 C -0.152 4.152 25 C -0.175 4.175 26 C -0.156 4.156 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.042 0.958 33 H 0.008 0.992 34 H 0.266 0.734 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.476 -1.680 -20.306 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.067 4.067 3 H 0.141 0.859 4 C 0.305 3.695 5 O -0.408 6.408 6 O -0.264 6.264 7 C -0.024 4.024 8 C 0.294 3.706 9 O -0.446 6.446 10 N -0.322 5.322 11 C 0.140 3.860 12 C -0.581 4.581 13 H 0.072 0.928 14 C -0.187 4.187 15 N -0.564 5.564 16 Si 0.783 3.217 17 H -0.193 1.193 18 H -0.199 1.199 19 H -0.210 1.210 20 C -0.017 4.017 21 C -0.080 4.080 22 C -0.073 4.073 23 N -0.166 5.166 24 C -0.170 4.170 25 C -0.212 4.212 26 C -0.192 4.192 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.144 0.856 32 H 0.060 0.940 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.131 0.869 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.124 0.876 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.268 -2.750 -20.084 21.218 hybrid contribution -1.013 -0.027 1.008 1.430 sum 5.255 -2.777 -19.076 19.980 Atomic orbital electron populations 1.21755 0.90684 1.03127 1.04196 1.20744 0.98961 1.00350 0.86632 0.85938 1.24485 0.77070 0.83091 0.84855 1.90644 1.36312 1.26496 1.87304 1.86587 1.69599 1.55252 1.14920 1.22900 1.01652 0.96063 0.81743 1.20469 0.80597 0.84329 0.85250 1.90708 1.38643 1.27900 1.87312 1.47994 1.49296 1.29054 1.05828 1.18905 0.94187 0.92648 0.80306 1.21775 1.07150 1.20829 1.08319 0.92764 1.25698 1.00998 0.95379 0.96586 1.70022 1.40696 1.29191 1.16487 0.85513 0.79596 0.78304 0.78274 1.19294 1.19918 1.21049 1.21621 0.87394 0.86817 1.05823 1.19842 0.90539 0.89354 1.08252 1.29210 0.92855 0.93893 0.91344 1.81343 1.11774 1.12446 1.11023 1.22070 0.96162 1.02754 0.96022 1.22859 0.93213 1.02213 1.02945 1.23201 1.01743 0.97858 0.96433 0.88487 0.92240 0.92123 0.86902 0.85577 0.93971 0.97345 0.92517 0.88837 0.87963 0.84894 0.85433 0.86939 0.88584 0.90007 0.87574 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.11 71.98 0.66 -1.61 16 2 C -0.05 -0.85 2.98 -11.54 -0.03 -0.88 16 3 H 0.12 1.83 7.90 -2.39 -0.02 1.81 16 4 C 0.46 11.31 7.13 71.24 0.51 11.82 16 5 O -0.52 -14.13 14.83 21.97 0.33 -13.81 16 6 O -0.35 -10.10 9.66 -45.01 -0.43 -10.54 16 7 C 0.05 1.42 4.50 71.23 0.32 1.74 16 8 C 0.51 18.55 7.75 87.66 0.68 19.23 16 9 O -0.57 -27.13 16.08 15.78 0.25 -26.88 16 10 N -0.59 -20.77 2.46 -826.18 -2.03 -22.80 16 11 C 0.26 12.21 5.16 85.63 0.44 12.65 16 12 C -0.54 -28.72 9.39 25.60 0.24 -28.48 16 13 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 14 C 0.01 0.69 5.46 84.66 0.46 1.16 16 15 N -0.92 -52.65 13.29 21.45 0.28 -52.37 16 16 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 C 0.11 2.59 5.17 86.38 0.45 3.04 16 21 C -0.04 -0.70 6.03 28.79 0.17 -0.53 16 22 C 0.24 5.42 15.44 89.42 1.38 6.80 16 23 N -0.49 -13.86 18.55 20.03 0.37 -13.49 16 24 C -0.15 -2.34 4.72 -10.79 -0.05 -2.39 16 25 C -0.18 -2.82 8.98 30.61 0.27 -2.54 16 26 C -0.16 -1.76 10.18 30.61 0.31 -1.45 16 27 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 1.19 8.11 -2.39 -0.02 1.17 16 30 H 0.11 2.65 7.40 -2.39 -0.02 2.63 16 31 H 0.13 2.52 7.18 -2.38 -0.02 2.51 16 32 H 0.04 1.94 8.07 -2.39 -0.02 1.92 16 33 H 0.01 0.46 7.42 -2.39 -0.02 0.45 16 34 H 0.27 14.32 8.31 -92.70 -0.77 13.55 16 35 H 0.09 2.42 8.07 -2.38 -0.02 2.40 16 36 H 0.10 1.95 6.44 -2.39 -0.02 1.93 16 37 H 0.13 1.75 7.22 -2.39 -0.02 1.73 16 38 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 39 H 0.11 1.69 8.11 -2.39 -0.02 1.67 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.49 8.10 -2.38 -0.02 1.47 16 42 H 0.11 1.01 8.05 -2.39 -0.02 0.99 16 43 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -74.41 376.61 7.62 -66.79 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.01 Total: 9.43 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 5.81 Total: 18.55 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -1.37 Total: -88.66 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: 0.14 Total: -51.22 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -74.41 7.62 -66.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748151492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.366 kcal (2) G-P(sol) polarization free energy of solvation -74.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds