Wall clock time and date at job start Tue Mar 31 2020 09:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47208 * 2 1 4 4 C 1.50701 * 109.47367 * 120.00424 * 2 1 3 5 5 O 1.21278 * 120.00092 * 105.92430 * 4 2 1 6 6 N 1.34780 * 119.99842 * 285.93128 * 4 2 1 7 7 C 1.46506 * 119.99901 * 5.04552 * 6 4 2 8 8 C 1.46495 * 120.00035 * 185.04786 * 6 4 2 9 9 C 1.50708 * 109.47052 * 269.99653 * 8 6 4 10 10 H 1.08004 * 119.99434 * 0.02562 * 9 8 6 11 11 C 1.37876 * 120.00011 * 179.97438 * 9 8 6 12 12 N 1.31510 * 120.00090 * 359.72818 * 11 9 8 13 13 Si 1.86799 * 119.99618 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46735 * 179.72744 * 13 11 9 15 15 H 1.48501 * 109.47259 * 299.72502 * 13 11 9 16 16 H 1.48497 * 109.47429 * 59.72795 * 13 11 9 17 17 N 1.46908 * 109.47258 * 240.00262 * 2 1 3 18 18 C 1.47447 * 110.99891 * 180.84226 * 17 2 1 19 19 C 1.54314 * 107.22915 * 236.74133 * 18 17 2 20 20 C 1.55132 * 103.02430 * 337.71908 * 19 18 17 21 21 H 1.09001 * 111.02334 * 277.54611 * 20 19 18 22 22 C 1.52997 * 110.99232 * 153.74508 * 20 19 18 23 23 F 1.39900 * 109.47450 * 307.73402 * 22 20 19 24 24 F 1.39905 * 109.47325 * 67.73279 * 22 20 19 25 25 F 1.39905 * 109.47259 * 187.73383 * 22 20 19 26 26 C 1.47840 * 110.99734 * 59.99957 * 17 2 1 27 27 H 1.08996 * 109.47005 * 290.21477 * 1 2 3 28 28 H 1.09002 * 109.46699 * 50.21454 * 1 2 3 29 29 H 1.08998 * 109.46954 * 170.21115 * 1 2 3 30 30 H 1.09001 * 109.46678 * 267.81392 * 7 6 4 31 31 H 1.08994 * 109.47173 * 27.80988 * 7 6 4 32 32 H 1.08994 * 109.46922 * 147.81289 * 7 6 4 33 33 H 1.08999 * 109.47359 * 149.99932 * 8 6 4 34 34 H 1.08998 * 109.47261 * 29.99425 * 8 6 4 35 35 H 0.97000 * 119.99744 * 0.27568 * 12 11 9 36 36 H 1.09000 * 109.89163 * 356.14867 * 18 17 2 37 37 H 1.09006 * 109.88417 * 117.33637 * 18 17 2 38 38 H 1.09006 * 110.70488 * 219.33432 * 19 18 17 39 39 H 1.09003 * 110.70601 * 96.10888 * 19 18 17 40 40 H 1.08999 * 110.37758 * 265.19152 * 26 17 2 41 41 H 1.09003 * 110.37622 * 27.53391 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.5063 -1.8230 1.1372 6 7 1.9550 -0.1096 2.4344 7 6 1.2833 1.1859 2.5646 8 6 2.5425 -0.7519 3.6127 9 6 1.5130 -1.6356 4.2688 10 1 0.5206 -1.7115 3.8496 11 6 1.8386 -2.3479 5.4035 12 7 3.0490 -2.2604 5.9102 13 14 0.5627 -3.4438 6.2163 14 1 1.1604 -4.1004 7.4067 15 1 -0.6006 -2.6219 6.6362 16 1 0.1141 -4.4804 5.2523 17 7 2.0197 -0.6925 -1.1995 18 6 3.4935 -0.7297 -1.2235 19 6 3.9460 -0.0712 -2.5437 20 6 2.6949 -0.2102 -3.4504 21 1 2.6520 -1.1983 -3.9087 22 6 2.6659 0.8869 -4.5164 23 9 2.8104 2.1363 -3.9038 24 9 3.7148 0.6868 -5.4203 25 9 1.4461 0.8410 -5.1999 26 6 1.5457 -0.0220 -2.4289 27 1 -0.3633 0.3551 0.9643 28 1 -0.3633 0.6576 -0.7897 29 1 -0.3633 -1.0127 -0.1747 30 1 2.0142 1.9868 2.4532 31 1 0.5212 1.2794 1.7911 32 1 0.8151 1.2552 3.5464 33 1 2.8683 0.0122 4.3185 34 1 3.3984 -1.3547 3.3091 35 1 3.7115 -1.6916 5.4880 36 1 3.8924 -0.1728 -0.3756 37 1 3.8390 -1.7629 -1.1869 38 1 4.7933 -0.6074 -2.9712 39 1 4.1929 0.9787 -2.3859 40 1 0.6338 -0.4959 -2.7921 41 1 1.3746 1.0380 -2.2412 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761043621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:00 Heat of formation + Delta-G solvation = -176.561370 kcal Electronic energy + Delta-G solvation = -26770.935966 eV Core-core repulsion = 22464.158887 eV Total energy + Delta-G solvation = -4306.777079 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.40642 -47.89817 -47.88192 -40.14341 -38.26908 -34.97151 -34.00783 -32.70958 -30.45592 -29.07277 -27.29701 -26.26157 -25.53974 -23.65101 -22.56313 -21.41904 -21.04442 -18.87034 -18.76810 -18.45344 -17.67165 -16.95797 -16.76835 -16.03415 -15.51093 -14.97792 -14.81873 -14.67776 -14.34560 -14.28493 -14.06936 -14.02516 -13.94256 -13.73682 -13.68046 -13.41457 -12.75798 -12.69855 -12.45050 -12.33052 -12.11847 -11.86396 -11.63208 -11.49398 -11.40345 -11.37594 -11.17026 -11.01345 -10.85441 -10.57836 -10.09716 -9.12885 -8.95639 -8.39053 -8.37926 -7.63900 -6.38803 -4.10623 2.39457 3.28720 3.32088 3.43024 3.47781 3.48754 3.64274 3.67538 3.72748 4.04832 4.31305 4.40985 4.53847 4.68311 4.84752 4.93745 5.05027 5.12372 5.14858 5.32580 5.36232 5.41769 5.45059 5.53281 5.66324 5.70480 5.77960 5.80796 6.05201 6.08650 6.29741 6.68343 6.79282 6.87899 7.08812 7.37749 8.02855 8.26077 8.42694 8.77238 9.00079 9.58848 10.98485 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.031582 B = 0.003100 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.356403 B = 9028.920708 C = 9150.437069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 H 0.060 0.940 4 C 0.508 3.492 5 O -0.518 6.518 6 N -0.600 5.600 7 C 0.072 3.928 8 C 0.238 3.762 9 C -0.604 4.604 10 H 0.051 0.949 11 C 0.019 3.981 12 N -0.910 5.910 13 Si 1.071 2.929 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.287 1.287 17 N -0.500 5.500 18 C 0.055 3.945 19 C -0.137 4.137 20 C -0.150 4.150 21 H 0.131 0.869 22 C 0.462 3.538 23 F -0.182 7.182 24 F -0.182 7.182 25 F -0.182 7.182 26 C 0.053 3.947 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.021 0.979 34 H 0.031 0.969 35 H 0.267 0.733 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.205 9.877 -19.848 22.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.052 4.052 3 H 0.077 0.923 4 C 0.293 3.707 5 O -0.393 6.393 6 N -0.333 5.333 7 C -0.072 4.072 8 C 0.118 3.882 9 C -0.643 4.643 10 H 0.070 0.930 11 C -0.185 4.185 12 N -0.546 5.546 13 Si 0.899 3.101 14 H -0.207 1.207 15 H -0.215 1.215 16 H -0.214 1.214 17 N -0.225 5.225 18 C -0.073 4.073 19 C -0.176 4.176 20 C -0.170 4.170 21 H 0.149 0.851 22 C 0.407 3.593 23 F -0.164 7.164 24 F -0.164 7.164 25 F -0.163 7.163 26 C -0.075 4.075 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.039 0.961 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.377 7.756 -18.576 20.270 hybrid contribution 0.481 2.234 -1.497 2.732 sum -1.896 9.990 -20.073 22.502 Atomic orbital electron populations 1.21965 0.92223 1.03761 1.02678 1.21880 0.97474 0.95675 0.90157 0.92260 1.20021 0.80231 0.86536 0.83899 1.90683 1.44812 1.18242 1.85603 1.47935 1.56117 1.20422 1.08793 1.21903 0.96803 0.85141 1.03362 1.19315 0.94780 0.92663 0.81400 1.22237 0.99140 1.29714 1.13179 0.93034 1.25812 0.99950 0.97701 0.95024 1.70810 1.03697 1.38272 1.41840 0.83510 0.74372 0.76024 0.76180 1.20682 1.21471 1.21351 1.63460 1.09092 1.50034 0.99879 1.22774 0.86909 1.02417 0.95174 1.22960 0.96233 1.02761 0.95637 1.23679 1.00294 0.98173 0.94814 0.85128 1.20365 0.73454 0.83062 0.82417 1.93168 1.95447 1.45032 1.82736 1.93191 1.58300 1.94988 1.69898 1.93195 1.44956 1.96542 1.81653 1.23074 0.96891 0.98665 0.88894 0.90493 0.92032 0.90658 0.93922 0.91330 0.90727 0.96142 0.95076 0.92310 0.92144 0.88845 0.89103 0.90226 0.88536 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.46 37.16 0.31 -1.58 16 2 C 0.06 0.89 1.27 -68.86 -0.09 0.80 16 3 H 0.06 0.78 7.66 -51.93 -0.40 0.38 16 4 C 0.51 10.36 6.00 -10.98 -0.07 10.29 16 5 O -0.52 -12.84 15.14 5.56 0.08 -12.76 16 6 N -0.60 -12.55 2.86 -182.95 -0.52 -13.07 16 7 C 0.07 1.12 9.85 59.85 0.59 1.71 16 8 C 0.24 6.15 4.45 -5.19 -0.02 6.13 16 9 C -0.60 -17.29 9.39 -34.44 -0.32 -17.61 16 10 H 0.05 1.49 7.81 -52.48 -0.41 1.08 16 11 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 12 N -0.91 -27.76 13.65 55.43 0.76 -27.00 16 13 Si 1.07 25.64 29.90 -169.99 -5.08 20.56 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 N -0.50 -6.90 4.76 -224.67 -1.07 -7.97 16 18 C 0.05 0.73 5.48 -2.84 -0.02 0.71 16 19 C -0.14 -1.32 6.30 -24.91 -0.16 -1.48 16 20 C -0.15 -1.35 3.04 -88.49 -0.27 -1.62 16 21 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 22 C 0.46 4.28 2.77 37.16 0.10 4.39 16 23 F -0.18 -1.84 15.75 2.25 0.04 -1.80 16 24 F -0.18 -1.78 17.25 2.25 0.04 -1.74 16 25 F -0.18 -1.76 17.10 2.25 0.04 -1.72 16 26 C 0.05 0.54 4.82 -2.30 -0.01 0.53 16 27 H 0.08 0.98 5.52 -51.93 -0.29 0.69 16 28 H 0.06 0.60 7.44 -51.93 -0.39 0.21 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.88 4.20 -51.93 -0.22 0.66 16 32 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 33 H 0.02 0.53 7.94 -51.93 -0.41 0.12 16 34 H 0.03 0.89 7.36 -51.93 -0.38 0.51 16 35 H 0.27 8.06 7.22 -40.82 -0.29 7.77 16 36 H 0.06 0.89 7.01 -51.93 -0.36 0.52 16 37 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.75 7.27 -51.93 -0.38 0.37 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.56 6.99 -51.93 -0.36 0.20 16 LS Contribution 338.39 15.07 5.10 5.10 Total: -1.00 -33.60 338.39 -6.31 -39.91 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.65 Total: -2.23 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -0.04 Total: 2.73 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.84 Total: -48.05 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.08 Total: -12.76 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.11 Total: -5.27 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.56 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.60 -6.31 -39.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761043621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.649 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds