Wall clock time and date at job start Tue Mar 31 2020 09:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47379 * 2 1 4 4 C 1.50711 * 109.46685 * 119.99248 * 2 1 3 5 5 O 1.21283 * 119.99291 * 88.46762 * 4 2 1 6 6 N 1.34769 * 120.00026 * 268.46403 * 4 2 1 7 7 C 1.46496 * 120.00381 * 3.76867 * 6 4 2 8 8 C 1.46507 * 119.99675 * 183.77136 * 6 4 2 9 9 C 1.50705 * 109.46921 * 269.99746 * 8 6 4 10 10 H 1.08002 * 119.99881 * 0.02562 * 9 8 6 11 11 C 1.37877 * 119.99461 * 179.97438 * 9 8 6 12 12 N 1.31504 * 120.00533 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99485 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47013 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47087 * 60.00306 * 13 11 9 16 16 H 1.48499 * 109.47123 * 300.00659 * 13 11 9 17 17 N 1.46890 * 109.47557 * 239.99239 * 2 1 3 18 18 C 1.47443 * 111.00398 * 310.29252 * 17 2 1 19 19 C 1.54317 * 107.23607 * 123.24990 * 18 17 2 20 20 C 1.55141 * 103.01890 * 22.28972 * 19 18 17 21 21 H 1.09004 * 110.99518 * 82.43316 * 20 19 18 22 22 C 1.53002 * 110.99018 * 206.21416 * 20 19 18 23 23 F 1.39902 * 109.46965 * 58.54886 * 22 20 19 24 24 F 1.39906 * 109.46889 * 178.54278 * 22 20 19 25 25 F 1.39890 * 109.47062 * 298.54263 * 22 20 19 26 26 C 1.47850 * 110.99546 * 71.13082 * 17 2 1 27 27 H 1.08997 * 109.47537 * 313.03806 * 1 2 3 28 28 H 1.09000 * 109.47087 * 73.03564 * 1 2 3 29 29 H 1.08998 * 109.47370 * 193.03007 * 1 2 3 30 30 H 1.08995 * 109.47184 * 275.34318 * 7 6 4 31 31 H 1.09002 * 109.46908 * 35.34264 * 7 6 4 32 32 H 1.09004 * 109.47290 * 155.33963 * 7 6 4 33 33 H 1.08995 * 109.46856 * 149.99966 * 8 6 4 34 34 H 1.08992 * 109.47130 * 29.99895 * 8 6 4 35 35 H 0.97003 * 120.00058 * 0.02562 * 12 11 9 36 36 H 1.09004 * 109.88974 * 242.66223 * 18 17 2 37 37 H 1.09006 * 109.88680 * 3.68665 * 18 17 2 38 38 H 1.09005 * 110.70195 * 140.66699 * 19 18 17 39 39 H 1.08989 * 110.70942 * 263.73014 * 19 18 17 40 40 H 1.08989 * 110.37991 * 332.46782 * 26 17 2 41 41 H 1.09001 * 110.37072 * 94.81072 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2307 5 8 2.2078 -1.9102 1.2090 6 7 2.2863 -0.0122 2.3551 7 6 1.9964 1.4228 2.4077 8 6 2.8524 -0.6885 3.5250 9 6 1.7361 -1.2023 4.3973 10 1 0.7078 -1.0416 4.1088 11 6 2.0276 -1.8785 5.5629 12 7 3.2797 -2.0747 5.9138 13 14 0.6438 -2.5161 6.6438 14 1 1.2176 -3.2015 7.8296 15 1 -0.1864 -3.4746 5.8710 16 1 -0.1999 -1.3785 7.0902 17 7 2.0197 -0.6926 -1.1992 18 6 1.3567 -1.9994 -1.3626 19 6 0.6928 -2.0043 -2.7557 20 6 1.4944 -0.9240 -3.5286 21 1 2.4238 -1.3349 -3.9229 22 6 0.6504 -0.3120 -4.6485 23 9 -0.5074 0.2538 -4.1039 24 9 1.3908 0.6790 -5.3020 25 9 0.2964 -1.3091 -5.5636 26 6 1.7754 0.1143 -2.4138 27 1 -0.3634 0.7013 0.7511 28 1 -0.3633 0.2998 -0.9829 29 1 -0.3634 -1.0012 0.2317 30 1 2.8365 1.9786 1.9913 31 1 1.0980 1.6335 1.8276 32 1 1.8391 1.7240 3.4434 33 1 3.4619 0.0152 4.0918 34 1 3.4715 -1.5237 3.1975 35 1 3.9983 -1.7433 5.3527 36 1 2.0941 -2.7997 -1.3003 37 1 0.6006 -2.1309 -0.5885 38 1 0.8022 -2.9790 -3.2312 39 1 -0.3591 -1.7286 -2.6823 40 1 0.9105 0.7619 -2.2717 41 1 2.6572 0.7060 -2.6600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761043622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:04 Heat of formation + Delta-G solvation = -179.023030 kcal Electronic energy + Delta-G solvation = -26842.455643 eV Core-core repulsion = 22535.571818 eV Total energy + Delta-G solvation = -4306.883825 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.39918 -47.89023 -47.87583 -40.26130 -38.28124 -34.96259 -33.88264 -32.73291 -29.88541 -29.39731 -27.48586 -26.05412 -25.49599 -24.01674 -22.66256 -21.44350 -20.82837 -18.87096 -18.68456 -18.38380 -17.70368 -16.95467 -16.60762 -15.99899 -15.55861 -15.03121 -14.82602 -14.68485 -14.43485 -14.31509 -14.06868 -14.03925 -13.78571 -13.77932 -13.59727 -13.32522 -12.90392 -12.61062 -12.37786 -12.20048 -12.04017 -11.85350 -11.77645 -11.75787 -11.40909 -11.34492 -11.17172 -10.93287 -10.87623 -10.58597 -10.11127 -9.13111 -8.96099 -8.39642 -8.35827 -7.63023 -6.39035 -4.11147 2.40460 3.20001 3.40195 3.42843 3.45839 3.50612 3.63034 3.71161 3.73867 4.16628 4.34746 4.43871 4.52730 4.69337 4.85480 4.97096 5.01737 5.11930 5.14571 5.33029 5.35862 5.44119 5.48629 5.52244 5.61266 5.69940 5.81126 5.82857 6.06381 6.15769 6.20654 6.71546 6.84086 6.88158 7.12397 7.38878 8.03001 8.27338 8.41999 8.76890 9.00585 9.58574 10.98225 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.029979 B = 0.003153 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.756545 B = 8877.366615 C = 9091.680845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.056 3.944 3 H 0.099 0.901 4 C 0.518 3.482 5 O -0.529 6.529 6 N -0.598 5.598 7 C 0.083 3.917 8 C 0.238 3.762 9 C -0.605 4.605 10 H 0.050 0.950 11 C 0.019 3.981 12 N -0.909 5.909 13 Si 1.071 2.929 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.288 1.288 17 N -0.504 5.504 18 C 0.051 3.949 19 C -0.137 4.137 20 C -0.149 4.149 21 H 0.130 0.870 22 C 0.461 3.539 23 F -0.182 7.182 24 F -0.183 7.183 25 F -0.182 7.182 26 C 0.047 3.953 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.021 0.979 34 H 0.033 0.967 35 H 0.268 0.732 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.602 7.188 -20.350 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.056 4.056 3 H 0.117 0.883 4 C 0.303 3.697 5 O -0.404 6.404 6 N -0.331 5.331 7 C -0.061 4.061 8 C 0.118 3.882 9 C -0.644 4.644 10 H 0.069 0.931 11 C -0.185 4.185 12 N -0.545 5.545 13 Si 0.899 3.101 14 H -0.206 1.206 15 H -0.214 1.214 16 H -0.215 1.215 17 N -0.228 5.228 18 C -0.076 4.076 19 C -0.176 4.176 20 C -0.169 4.169 21 H 0.148 0.852 22 C 0.407 3.593 23 F -0.164 7.164 24 F -0.164 7.164 25 F -0.164 7.164 26 C -0.080 4.080 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.039 0.961 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.281 5.665 -18.859 20.387 hybrid contribution -0.740 1.275 -1.747 2.286 sum -6.020 6.940 -20.607 22.562 Atomic orbital electron populations 1.22393 0.95146 1.03763 1.02581 1.21892 0.94461 0.98761 0.90519 0.88338 1.19929 0.78625 0.87557 0.83562 1.90652 1.51894 1.14251 1.83649 1.47911 1.62631 1.08503 1.14015 1.21665 0.99212 0.82076 1.03170 1.19332 0.94623 0.92472 0.81790 1.22235 0.93439 1.40241 1.08485 0.93146 1.25801 1.01123 0.94589 0.96968 1.70799 0.99188 1.44224 1.40334 0.83515 0.74236 0.76380 0.75973 1.20647 1.21435 1.21486 1.63573 1.56034 1.02834 1.00344 1.22868 0.98374 0.92041 0.94351 1.22978 0.99489 0.98477 0.96650 1.23665 1.00377 0.99056 0.93770 0.85245 1.20380 0.79179 0.76389 0.83381 1.93169 1.51854 1.85812 1.85539 1.93194 1.76650 1.63468 1.83113 1.93186 1.92621 1.61215 1.69334 1.23106 1.02102 0.94843 0.87991 0.91113 0.91657 0.91098 0.93699 0.92568 0.90534 0.96100 0.94918 0.92211 0.89278 0.90370 0.89248 0.90366 0.91856 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 8.28 37.16 0.31 -1.98 16 2 C 0.06 0.81 1.82 -68.87 -0.13 0.69 16 3 H 0.10 1.24 6.74 -51.93 -0.35 0.89 16 4 C 0.52 10.53 6.71 -10.98 -0.07 10.46 16 5 O -0.53 -12.90 14.47 5.56 0.08 -12.82 16 6 N -0.60 -12.57 2.86 -182.95 -0.52 -13.09 16 7 C 0.08 1.29 9.61 59.84 0.57 1.87 16 8 C 0.24 6.16 4.42 -5.19 -0.02 6.14 16 9 C -0.61 -17.23 9.39 -34.44 -0.32 -17.56 16 10 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 11 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 12 N -0.91 -27.71 13.65 55.43 0.76 -26.96 16 13 Si 1.07 25.48 29.90 -169.99 -5.08 20.40 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 17 N -0.50 -6.83 5.06 -224.67 -1.14 -7.97 16 18 C 0.05 0.68 4.83 -2.84 -0.01 0.66 16 19 C -0.14 -1.34 6.20 -24.91 -0.15 -1.49 16 20 C -0.15 -1.33 3.04 -88.48 -0.27 -1.60 16 21 H 0.13 1.03 8.14 -51.93 -0.42 0.60 16 22 C 0.46 4.28 2.77 37.16 0.10 4.38 16 23 F -0.18 -1.83 15.75 2.25 0.04 -1.80 16 24 F -0.18 -1.77 17.23 2.25 0.04 -1.73 16 25 F -0.18 -1.79 17.13 2.25 0.04 -1.75 16 26 C 0.05 0.48 5.75 -2.29 -0.01 0.47 16 27 H 0.07 0.85 6.99 -51.93 -0.36 0.49 16 28 H 0.06 0.69 6.41 -51.93 -0.33 0.36 16 29 H 0.07 1.02 6.31 -51.93 -0.33 0.69 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.72 5.80 -51.93 -0.30 0.42 16 32 H 0.08 1.24 8.03 -51.93 -0.42 0.82 16 33 H 0.02 0.54 7.94 -51.93 -0.41 0.13 16 34 H 0.03 0.95 7.34 -51.93 -0.38 0.57 16 35 H 0.27 8.10 7.22 -40.82 -0.29 7.81 16 36 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.08 1.18 4.92 -51.93 -0.26 0.93 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.74 7.51 -51.94 -0.39 0.35 16 40 H 0.06 0.61 5.44 -51.94 -0.28 0.32 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 334.81 15.07 5.05 5.05 Total: -1.00 -33.22 334.81 -6.28 -39.50 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -5.43 Total: -1.34 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -0.11 Total: 2.49 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.90 Total: -48.02 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.11 Total: -5.27 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.22 -6.28 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761043622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.520 kcal (2) G-P(sol) polarization free energy of solvation -33.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds