Wall clock time and date at job start Tue Mar 31 2020 09:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47379 * 2 1 4 4 C 1.50711 * 109.46685 * 119.99248 * 2 1 3 5 5 O 1.21283 * 119.99291 * 88.46762 * 4 2 1 6 6 N 1.34769 * 120.00026 * 268.46403 * 4 2 1 7 7 C 1.46496 * 120.00381 * 3.76867 * 6 4 2 8 8 C 1.46507 * 119.99675 * 183.77136 * 6 4 2 9 9 C 1.50705 * 109.46921 * 269.99746 * 8 6 4 10 10 H 1.08002 * 119.99881 * 0.02562 * 9 8 6 11 11 C 1.37877 * 119.99461 * 179.97438 * 9 8 6 12 12 N 1.31504 * 120.00533 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99485 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47013 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47087 * 60.00306 * 13 11 9 16 16 H 1.48499 * 109.47123 * 300.00659 * 13 11 9 17 17 N 1.46890 * 109.47557 * 239.99239 * 2 1 3 18 18 C 1.47443 * 111.00398 * 310.29252 * 17 2 1 19 19 C 1.54317 * 107.23607 * 123.24990 * 18 17 2 20 20 C 1.55141 * 103.01890 * 22.28972 * 19 18 17 21 21 H 1.09004 * 110.99518 * 82.43316 * 20 19 18 22 22 C 1.53002 * 110.99018 * 206.21416 * 20 19 18 23 23 F 1.39902 * 109.46965 * 58.54886 * 22 20 19 24 24 F 1.39906 * 109.46889 * 178.54278 * 22 20 19 25 25 F 1.39890 * 109.47062 * 298.54263 * 22 20 19 26 26 C 1.47850 * 110.99546 * 71.13082 * 17 2 1 27 27 H 1.08997 * 109.47537 * 313.03806 * 1 2 3 28 28 H 1.09000 * 109.47087 * 73.03564 * 1 2 3 29 29 H 1.08998 * 109.47370 * 193.03007 * 1 2 3 30 30 H 1.08995 * 109.47184 * 275.34318 * 7 6 4 31 31 H 1.09002 * 109.46908 * 35.34264 * 7 6 4 32 32 H 1.09004 * 109.47290 * 155.33963 * 7 6 4 33 33 H 1.08995 * 109.46856 * 149.99966 * 8 6 4 34 34 H 1.08992 * 109.47130 * 29.99895 * 8 6 4 35 35 H 0.97003 * 120.00058 * 0.02562 * 12 11 9 36 36 H 1.09004 * 109.88974 * 242.66223 * 18 17 2 37 37 H 1.09006 * 109.88680 * 3.68665 * 18 17 2 38 38 H 1.09005 * 110.70195 * 140.66699 * 19 18 17 39 39 H 1.08989 * 110.70942 * 263.73014 * 19 18 17 40 40 H 1.08989 * 110.37991 * 332.46782 * 26 17 2 41 41 H 1.09001 * 110.37072 * 94.81072 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2307 5 8 2.2078 -1.9102 1.2090 6 7 2.2863 -0.0122 2.3551 7 6 1.9964 1.4228 2.4077 8 6 2.8524 -0.6885 3.5250 9 6 1.7361 -1.2023 4.3973 10 1 0.7078 -1.0416 4.1088 11 6 2.0276 -1.8785 5.5629 12 7 3.2797 -2.0747 5.9138 13 14 0.6438 -2.5161 6.6438 14 1 1.2176 -3.2015 7.8296 15 1 -0.1864 -3.4746 5.8710 16 1 -0.1999 -1.3785 7.0902 17 7 2.0197 -0.6926 -1.1992 18 6 1.3567 -1.9994 -1.3626 19 6 0.6928 -2.0043 -2.7557 20 6 1.4944 -0.9240 -3.5286 21 1 2.4238 -1.3349 -3.9229 22 6 0.6504 -0.3120 -4.6485 23 9 -0.5074 0.2538 -4.1039 24 9 1.3908 0.6790 -5.3020 25 9 0.2964 -1.3091 -5.5636 26 6 1.7754 0.1143 -2.4138 27 1 -0.3634 0.7013 0.7511 28 1 -0.3633 0.2998 -0.9829 29 1 -0.3634 -1.0012 0.2317 30 1 2.8365 1.9786 1.9913 31 1 1.0980 1.6335 1.8276 32 1 1.8391 1.7240 3.4434 33 1 3.4619 0.0152 4.0918 34 1 3.4715 -1.5237 3.1975 35 1 3.9983 -1.7433 5.3527 36 1 2.0941 -2.7997 -1.3003 37 1 0.6006 -2.1309 -0.5885 38 1 0.8022 -2.9790 -3.2312 39 1 -0.3591 -1.7286 -2.6823 40 1 0.9105 0.7619 -2.2717 41 1 2.6572 0.7060 -2.6600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761043622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:03 Heat of formation + Delta-G solvation = -202.007813 kcal Electronic energy + Delta-G solvation = -26843.452338 eV Core-core repulsion = 22535.571818 eV Total energy + Delta-G solvation = -4307.880520 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.13109 -48.62776 -48.60543 -41.50736 -39.60777 -36.73342 -35.22474 -34.53620 -30.90398 -30.36841 -29.28041 -27.46187 -26.47606 -25.60310 -24.22576 -22.32651 -21.92952 -20.04476 -19.60125 -19.18050 -19.00820 -18.62366 -18.03337 -16.95333 -16.89339 -16.48606 -15.95154 -15.65437 -15.54093 -15.42554 -15.07844 -15.03388 -14.87202 -14.75832 -14.67368 -14.59495 -14.18341 -13.86422 -13.69048 -13.59908 -13.33801 -13.23813 -13.02127 -12.95097 -12.78974 -12.58513 -12.47666 -12.26869 -12.22353 -11.96308 -11.79916 -11.18867 -10.61985 -10.52955 -9.45354 -9.40478 -8.68630 -6.45009 1.48802 1.57863 1.62500 1.76679 1.77998 2.16535 2.53759 2.67660 2.76680 2.99278 3.09892 3.11729 3.46940 3.60990 3.67917 3.89871 3.99528 4.02811 4.12761 4.26841 4.29794 4.48090 4.53414 4.59854 4.61365 4.72952 4.75535 4.82190 4.85505 4.91923 4.95096 5.11629 5.15361 5.54568 5.78451 5.82482 5.87487 6.14729 6.44781 6.69318 7.29815 7.43264 8.65713 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.029979 B = 0.003153 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.756545 B = 8877.366615 C = 9091.680845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.070 3.930 3 H 0.128 0.872 4 C 0.506 3.494 5 O -0.582 6.582 6 N -0.608 5.608 7 C 0.077 3.923 8 C 0.249 3.751 9 C -0.614 4.614 10 H 0.045 0.955 11 C -0.032 4.032 12 N -0.932 5.932 13 Si 1.118 2.882 14 H -0.280 1.280 15 H -0.280 1.280 16 H -0.261 1.261 17 N -0.523 5.523 18 C 0.053 3.947 19 C -0.128 4.128 20 C -0.140 4.140 21 H 0.142 0.858 22 C 0.468 3.532 23 F -0.185 7.185 24 F -0.183 7.183 25 F -0.185 7.185 26 C 0.048 3.952 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.018 0.982 34 H -0.010 1.010 35 H 0.255 0.745 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.259 9.021 -21.887 24.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.042 4.042 3 H 0.145 0.855 4 C 0.294 3.706 5 O -0.461 6.461 6 N -0.340 5.340 7 C -0.065 4.065 8 C 0.126 3.874 9 C -0.653 4.653 10 H 0.064 0.936 11 C -0.231 4.231 12 N -0.569 5.569 13 Si 0.939 3.061 14 H -0.205 1.205 15 H -0.206 1.206 16 H -0.186 1.186 17 N -0.247 5.247 18 C -0.075 4.075 19 C -0.166 4.166 20 C -0.160 4.160 21 H 0.160 0.840 22 C 0.413 3.587 23 F -0.167 7.167 24 F -0.164 7.164 25 F -0.166 7.166 26 C -0.079 4.079 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.036 0.964 34 H 0.008 0.992 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.945 7.564 -20.435 22.870 hybrid contribution -0.167 0.711 -1.320 1.508 sum -7.112 8.275 -21.755 24.338 Atomic orbital electron populations 1.22366 0.93468 1.02854 1.04539 1.21785 0.95477 0.98966 0.87949 0.85473 1.21086 0.77357 0.87273 0.84847 1.90620 1.53973 1.16883 1.84674 1.47991 1.62422 1.10718 1.12838 1.21969 1.02049 0.78831 1.03678 1.18843 0.93678 0.91483 0.83346 1.22526 0.93721 1.40115 1.08897 0.93647 1.27357 1.02521 0.94425 0.98750 1.70922 0.99787 1.45613 1.40611 0.82929 0.71871 0.76905 0.74402 1.20498 1.20607 1.18552 1.63482 1.56619 1.03309 1.01327 1.22695 0.97209 0.91636 0.95924 1.22880 0.99524 0.99697 0.94494 1.23614 1.00689 0.98359 0.93376 0.84026 1.20285 0.78948 0.76214 0.83217 1.93166 1.52077 1.85860 1.85559 1.93198 1.76644 1.63477 1.83129 1.93186 1.92635 1.61352 1.69445 1.23199 1.03381 0.94774 0.86524 0.90053 0.88841 0.93348 0.90745 0.89113 0.91432 0.96416 0.99208 0.93573 0.91895 0.92646 0.87978 0.89684 0.90622 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 8.28 71.98 0.60 -3.40 16 2 C 0.07 1.91 1.82 44.17 0.08 1.99 16 3 H 0.13 2.73 6.74 -2.39 -0.02 2.71 16 4 C 0.51 20.79 6.71 87.66 0.59 21.38 16 5 O -0.58 -29.81 14.47 -3.04 -0.04 -29.85 16 6 N -0.61 -25.64 2.86 -851.13 -2.43 -28.07 16 7 C 0.08 2.23 9.61 127.77 1.23 3.45 16 8 C 0.25 13.39 4.42 85.63 0.38 13.77 16 9 C -0.61 -35.78 9.39 25.60 0.24 -35.54 16 10 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 11 C -0.03 -1.91 5.46 84.66 0.46 -1.44 16 12 N -0.93 -58.41 13.65 21.45 0.29 -58.11 16 13 Si 1.12 51.23 29.90 68.60 2.05 53.29 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 16 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 17 N -0.52 -13.44 5.06 -864.73 -4.38 -17.82 16 18 C 0.05 1.41 4.83 86.65 0.42 1.83 16 19 C -0.13 -2.26 6.20 31.77 0.20 -2.06 16 20 C -0.14 -2.14 3.04 -9.41 -0.03 -2.17 16 21 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 22 C 0.47 7.30 2.77 71.98 0.20 7.50 16 23 F -0.19 -3.12 15.75 44.97 0.71 -2.42 16 24 F -0.18 -2.99 17.23 44.97 0.77 -2.21 16 25 F -0.18 -3.15 17.13 44.97 0.77 -2.38 16 26 C 0.05 0.82 5.75 86.77 0.50 1.32 16 27 H 0.08 1.69 6.99 -2.39 -0.02 1.68 16 28 H 0.09 1.64 6.41 -2.39 -0.02 1.62 16 29 H 0.05 1.35 6.31 -2.39 -0.02 1.34 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.09 2.00 5.80 -2.39 -0.01 1.99 16 32 H 0.07 2.09 8.03 -2.39 -0.02 2.07 16 33 H 0.02 0.96 7.94 -2.39 -0.02 0.94 16 34 H -0.01 -0.63 7.34 -2.39 -0.02 -0.64 16 35 H 0.25 16.16 7.22 -92.71 -0.67 15.49 16 36 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.06 1.73 4.92 -2.38 -0.01 1.72 16 38 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.08 1.42 7.51 -2.39 -0.02 1.40 16 40 H 0.08 1.12 5.44 -2.39 -0.01 1.11 16 41 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -75.79 334.81 3.76 -72.03 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.16 Total: 8.93 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 4.86 Total: 6.63 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -6.51 Total: -104.00 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.04 Total: -29.85 kcal Atomic # 9 Polarization: -9.26 SS G_CDS: 2.25 Total: -7.01 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.05 Total: 53.29 kcal Total: -75.79 3.76 -72.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761043622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.980 kcal (2) G-P(sol) polarization free energy of solvation -75.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds