Wall clock time and date at job start Tue Mar 31 2020 09:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35976 * 117.00045 * 2 1 4 4 C 1.38722 * 120.00350 * 0.02562 * 3 2 1 5 5 C 1.38108 * 120.00185 * 179.97438 * 4 3 2 6 6 C 1.38720 * 120.00034 * 0.02562 * 5 4 3 7 7 O 1.35981 * 119.99818 * 180.02562 * 6 5 4 8 8 C 1.38681 * 120.00126 * 359.97438 * 6 5 4 9 9 C 1.50692 * 120.00190 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47142 * 40.00212 * 9 8 6 11 11 C 1.52993 * 109.47298 * 280.00044 * 9 8 6 12 12 N 1.46901 * 109.46945 * 159.99865 * 9 8 6 13 13 C 1.46905 * 110.99870 * 205.00102 * 12 9 8 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 9 15 15 O 1.21283 * 120.00271 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00196 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00269 * 180.02562 * 16 14 13 18 18 C 1.50709 * 109.47176 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99789 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99840 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00144 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99885 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46881 * 60.00504 * 22 20 18 24 24 H 1.48495 * 109.47414 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47292 * 300.00322 * 22 20 18 26 26 C 1.38158 * 119.99528 * 0.27438 * 8 6 5 27 27 H 1.09000 * 109.47757 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46839 * 300.00019 * 1 2 3 29 29 H 1.09003 * 109.47320 * 59.99276 * 1 2 3 30 30 H 1.08005 * 119.99839 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.99922 * 179.97438 * 5 4 3 32 32 H 0.96691 * 114.00266 * 269.97817 * 7 6 5 33 33 H 1.09006 * 109.47343 * 60.00098 * 11 9 8 34 34 H 1.09004 * 109.47587 * 180.02562 * 11 9 8 35 35 H 1.09000 * 109.47161 * 300.00156 * 11 9 8 36 36 H 1.00901 * 111.00067 * 328.95277 * 12 9 8 37 37 H 1.09001 * 109.46798 * 300.00327 * 13 12 9 38 38 H 1.08998 * 109.46961 * 60.00043 * 13 12 9 39 39 H 0.97009 * 119.99629 * 359.97438 * 16 14 13 40 40 H 1.09002 * 109.46836 * 299.99712 * 17 16 14 41 41 H 1.08998 * 109.47341 * 59.99973 * 17 16 14 42 42 H 0.97002 * 119.99740 * 179.97438 * 21 20 18 43 43 H 1.07999 * 119.99735 * 179.69811 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6055 0.0011 6 6 3.3032 3.6781 0.0005 7 8 3.9206 4.8897 0.0016 8 6 4.0585 2.5150 0.0000 9 6 5.5634 2.5938 0.0000 10 1 5.8851 3.3987 0.6609 11 6 6.0596 2.8713 -1.4204 12 7 6.1204 1.3195 0.4731 13 6 7.4596 1.5107 1.0459 14 6 7.9977 0.1849 1.5188 15 8 7.3315 -0.8204 1.3908 16 7 9.2193 0.1162 2.0839 17 6 9.7427 -1.1728 2.5430 18 6 11.1165 -0.9766 3.1308 19 1 11.5559 0.0095 3.1590 20 6 11.8123 -2.0560 3.6324 21 7 11.2773 -3.2570 3.5975 22 14 13.5153 -1.8130 4.3602 23 1 13.4338 -0.8742 5.5078 24 1 14.0458 -3.1195 4.8257 25 1 14.4206 -1.2522 3.3251 26 6 3.4312 1.2841 -0.0057 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 0.2123 2.3185 0.0005 31 1 1.3298 4.5113 0.0011 32 1 4.0991 5.2410 -0.8814 33 1 5.6463 3.8169 -1.7715 34 1 7.1482 2.9278 -1.4205 35 1 5.7379 2.0664 -2.0813 36 1 5.5022 0.8793 1.1381 37 1 8.1243 1.9222 0.2863 38 1 7.3995 2.2001 1.8881 39 1 9.7524 0.9203 2.1859 40 1 9.0779 -1.5852 3.3020 41 1 9.8034 -1.8613 1.7002 42 1 11.7670 -4.0165 3.9501 43 1 4.0194 0.3783 -0.0111 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775369664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:43 Heat of formation + Delta-G solvation = -90.225997 kcal Electronic energy + Delta-G solvation = -24639.481364 eV Core-core repulsion = 20878.304807 eV Total energy + Delta-G solvation = -3761.176556 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.72129 -39.07448 -38.66980 -36.73127 -35.67204 -34.10671 -32.32385 -31.77480 -30.37456 -28.83056 -27.78485 -27.32818 -25.67974 -23.65527 -22.66595 -22.01107 -20.53753 -19.69174 -18.56828 -18.18506 -17.05461 -16.87767 -16.03258 -16.00266 -15.57249 -15.49283 -15.30468 -14.77363 -14.60874 -14.35003 -14.02530 -13.75595 -13.59860 -13.02307 -12.89180 -12.74353 -12.62528 -12.36830 -12.16789 -11.99072 -11.84839 -11.69313 -11.56925 -11.13749 -11.07083 -10.97711 -10.83695 -10.52264 -10.29636 -9.38491 -9.16571 -8.97971 -8.70478 -8.42706 -8.24075 -7.82950 -6.14014 -4.21007 0.97317 1.07467 3.01726 3.26900 3.31530 3.32564 3.33161 3.43122 3.77533 4.02094 4.31422 4.39354 4.50932 4.52899 4.79479 4.85059 4.86604 5.12111 5.16439 5.21260 5.21755 5.23965 5.31963 5.43233 5.50595 5.60199 5.65254 5.75938 5.78430 5.88554 6.06193 6.14771 6.21565 6.33495 6.94539 7.10779 7.34183 7.38343 7.43271 7.48675 7.55797 7.70180 8.00208 8.67073 8.81595 9.15689 9.45650 10.96169 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020991 B = 0.002473 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.595187 B =11320.569458 C =12319.524971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.123 3.877 4 C -0.198 4.198 5 C -0.106 4.106 6 C 0.070 3.930 7 O -0.493 6.493 8 C -0.070 4.070 9 C 0.127 3.873 10 H 0.064 0.936 11 C -0.133 4.133 12 N -0.667 5.667 13 C 0.039 3.961 14 C 0.497 3.503 15 O -0.543 6.543 16 N -0.715 5.715 17 C 0.251 3.749 18 C -0.543 4.543 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.124 4.124 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.384 0.616 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.354 0.646 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.390 0.610 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.266 0.734 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.327 16.264 -9.951 27.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.077 3.923 4 C -0.217 4.217 5 C -0.124 4.124 6 C 0.025 3.975 7 O -0.303 6.303 8 C -0.071 4.071 9 C 0.017 3.983 10 H 0.082 0.918 11 C -0.191 4.191 12 N -0.302 5.302 13 C -0.093 4.093 14 C 0.281 3.719 15 O -0.421 6.421 16 N -0.364 5.364 17 C 0.130 3.870 18 C -0.582 4.582 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.143 4.143 27 H 0.119 0.881 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.239 0.761 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.175 0.825 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.222 0.778 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.076 0.924 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -20.467 14.857 -9.975 27.186 hybrid contribution 0.706 1.101 0.821 1.544 sum -19.761 15.958 -9.154 26.999 Atomic orbital electron populations 1.23071 0.78466 1.04115 1.01159 1.86157 1.21259 1.26585 1.88538 1.19036 0.92301 0.84257 0.96677 1.21108 1.00074 0.91833 1.08641 1.21117 0.93668 0.97719 0.99930 1.18094 0.89972 0.84421 1.04999 1.84863 1.79881 1.32294 1.33231 1.20062 0.95697 0.91982 0.99348 1.20330 0.88474 0.91691 0.97799 0.91840 1.21737 1.01383 1.00948 0.95011 1.60325 1.03299 1.21897 1.44665 1.21901 0.92253 0.96045 0.99137 1.20326 0.82532 0.90250 0.78828 1.90667 1.58421 1.36859 1.56138 1.46440 1.16608 1.13334 1.60001 1.19082 0.93434 0.79476 0.94983 1.21198 1.01020 0.94648 1.41317 0.91970 1.24955 0.98532 0.94909 0.95651 1.69970 1.38119 0.99091 1.45119 0.86474 0.83527 0.77452 0.79435 1.20093 1.21083 1.20067 1.20395 0.91281 0.98882 1.03727 0.88098 0.92682 0.92732 0.85191 0.85212 0.76072 0.92906 0.91908 0.91587 0.82472 0.88469 0.92682 0.77801 0.95621 0.95527 0.92403 0.83057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.53 10.50 -19.66 -0.21 -3.74 16 3 C 0.12 1.40 6.69 -39.24 -0.26 1.14 16 4 C -0.20 -1.83 9.03 -39.45 -0.36 -2.19 16 5 C -0.11 -0.96 9.98 -39.45 -0.39 -1.36 16 6 C 0.07 0.71 6.67 -39.24 -0.26 0.45 16 7 O -0.49 -4.35 12.66 -19.68 -0.25 -4.60 16 8 C -0.07 -0.80 5.00 -104.49 -0.52 -1.32 16 9 C 0.13 1.44 2.49 -68.87 -0.17 1.27 16 10 H 0.06 0.72 7.51 -51.93 -0.39 0.33 16 11 C -0.13 -1.30 9.39 37.15 0.35 -0.95 16 12 N -0.67 -9.48 5.23 -109.23 -0.57 -10.05 16 13 C 0.04 0.57 5.97 -4.97 -0.03 0.54 16 14 C 0.50 10.02 7.87 -10.99 -0.09 9.93 16 15 O -0.54 -13.27 16.20 5.56 0.09 -13.18 16 16 N -0.71 -15.17 5.55 -61.47 -0.34 -15.51 16 17 C 0.25 6.75 5.43 -5.19 -0.03 6.72 16 18 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 19 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 22 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C -0.12 -1.54 8.80 -39.45 -0.35 -1.89 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.13 0.88 6.29 -52.48 -0.33 0.55 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.38 1.71 8.63 45.56 0.39 2.10 16 33 H 0.05 0.39 7.63 -51.93 -0.40 -0.01 16 34 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.35 5.41 6.69 -39.29 -0.26 5.15 16 37 H 0.10 1.23 7.44 -51.93 -0.39 0.84 16 38 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 39 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.15 2.10 6.72 -52.49 -0.35 1.74 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -34.67 362.73 -6.94 -41.61 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.31 Total: 9.68 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -1.54 Total: -0.02 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.18 Total: -51.21 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.37 Total: -21.52 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.67 -6.94 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775369664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.616 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds