Wall clock time and date at job start Tue Mar 31 2020 09:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35980 * 117.00237 * 2 1 4 4 C 1.38718 * 119.99819 * 0.18532 * 3 2 1 5 5 C 1.38108 * 120.00163 * 180.23352 * 4 3 2 6 6 C 1.38722 * 119.99649 * 359.83640 * 5 4 3 7 7 O 1.35987 * 119.99879 * 179.97438 * 6 5 4 8 8 C 1.38675 * 120.00043 * 359.95862 * 6 5 4 9 9 C 1.50708 * 120.00001 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47033 * 325.02343 * 9 8 6 11 11 C 1.53003 * 109.46775 * 85.01957 * 9 8 6 12 12 N 1.46891 * 109.46929 * 205.01796 * 9 8 6 13 13 C 1.46909 * 110.99938 * 155.00106 * 12 9 8 14 14 C 1.50692 * 109.47263 * 180.02562 * 13 12 9 15 15 O 1.21280 * 120.00565 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99956 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00184 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47203 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00333 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99816 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00218 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99810 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47418 * 59.99776 * 22 20 18 24 24 H 1.48501 * 109.47250 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47095 * 299.99692 * 22 20 18 26 26 C 1.38153 * 120.00134 * 359.97438 * 8 6 5 27 27 H 1.08990 * 109.47316 * 59.99995 * 1 2 3 28 28 H 1.09000 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46711 * 299.99515 * 1 2 3 30 30 H 1.07999 * 120.00037 * 0.04882 * 4 3 2 31 31 H 1.08001 * 120.00515 * 179.81296 * 5 4 3 32 32 H 0.96703 * 114.00049 * 269.97820 * 7 6 5 33 33 H 1.09002 * 109.47445 * 60.00240 * 11 9 8 34 34 H 1.09007 * 109.46972 * 180.02562 * 11 9 8 35 35 H 1.09003 * 109.47434 * 299.99751 * 11 9 8 36 36 H 1.00897 * 111.00290 * 278.95420 * 12 9 8 37 37 H 1.08998 * 109.46711 * 300.00466 * 13 12 9 38 38 H 1.09000 * 109.46911 * 59.99794 * 13 12 9 39 39 H 0.97005 * 120.00531 * 359.97438 * 16 14 13 40 40 H 1.09005 * 109.47225 * 299.99775 * 17 16 14 41 41 H 1.09000 * 109.47158 * 59.99895 * 17 16 14 42 42 H 0.97003 * 120.00094 * 180.02562 * 21 20 18 43 43 H 1.08002 * 119.99805 * 179.97438 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0039 5 6 1.9178 3.6055 -0.0010 6 6 3.3032 3.6781 -0.0063 7 8 3.9205 4.8897 -0.0117 8 6 4.0584 2.5150 -0.0059 9 6 5.5634 2.5939 -0.0123 10 1 5.8797 3.4520 -0.6053 11 6 6.0720 2.7499 1.4223 12 7 6.1156 1.3645 -0.5966 13 6 7.4499 1.6038 -1.1627 14 6 7.9827 0.3232 -1.7520 15 8 7.3167 -0.6893 -1.7047 16 7 9.1996 0.3029 -2.3307 17 6 9.7178 -0.9422 -2.9031 18 6 11.0866 -0.6966 -3.4839 19 1 11.5263 0.2885 -3.4323 20 6 11.7770 -1.7292 -4.0822 21 7 11.2413 -2.9287 -4.1456 22 14 13.4739 -1.4250 -4.8015 23 1 14.3887 -0.9550 -3.7303 24 1 13.9991 -2.6870 -5.3818 25 1 13.3831 -0.3913 -5.8638 26 6 3.4312 1.2841 0.0003 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2124 2.3184 0.0077 31 1 1.3297 4.5113 -0.0010 32 1 4.0961 5.2378 -0.8966 33 1 5.7556 1.8918 2.0153 34 1 7.1605 2.8074 1.4176 35 1 5.6622 3.6622 1.8558 36 1 6.1398 0.6199 0.0839 37 1 7.3829 2.3621 -1.9428 38 1 8.1214 1.9495 -0.3767 39 1 9.7325 1.1125 -2.3683 40 1 9.7845 -1.7006 -2.1230 41 1 9.0466 -1.2876 -3.6893 42 1 11.7272 -3.6553 -4.5661 43 1 4.0195 0.3783 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775369668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:47 Heat of formation + Delta-G solvation = -91.956713 kcal Electronic energy + Delta-G solvation = -24625.670423 eV Core-core repulsion = 20864.418817 eV Total energy + Delta-G solvation = -3761.251606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.60844 -39.05406 -38.64324 -36.75116 -35.67055 -34.12465 -32.33790 -31.76986 -30.25712 -28.75058 -27.68360 -27.27168 -25.56978 -23.77689 -22.62689 -22.06026 -20.68897 -19.71453 -18.55745 -18.03834 -17.06194 -16.78425 -15.97659 -15.80981 -15.63736 -15.53892 -15.11793 -14.73305 -14.62655 -14.20991 -13.94327 -13.82080 -13.62993 -13.22348 -12.84289 -12.72146 -12.53991 -12.41796 -12.26079 -11.97400 -11.86001 -11.65275 -11.44193 -11.36935 -10.99397 -10.97762 -10.85290 -10.47569 -10.30977 -9.39995 -9.05985 -9.00016 -8.71866 -8.41339 -8.15969 -7.84757 -6.15333 -4.22436 1.08925 1.17818 3.08980 3.25763 3.30532 3.31994 3.40785 3.42790 3.77258 4.09751 4.29829 4.46142 4.57704 4.60462 4.84827 4.89415 4.91732 5.06573 5.08010 5.20459 5.21538 5.26409 5.37297 5.41367 5.46326 5.57913 5.63869 5.69949 5.86207 5.94674 6.02605 6.15602 6.33025 6.42072 6.93133 7.18190 7.32462 7.36476 7.46753 7.50238 7.54167 7.68519 7.98777 8.65236 8.80052 9.13820 9.44253 10.94822 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.002467 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.162352 B =11349.363014 C =12299.011677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.119 3.881 4 C -0.199 4.199 5 C -0.108 4.108 6 C 0.067 3.933 7 O -0.495 6.495 8 C -0.052 4.052 9 C 0.129 3.871 10 H 0.091 0.909 11 C -0.176 4.176 12 N -0.666 5.666 13 C 0.041 3.959 14 C 0.496 3.504 15 O -0.543 6.543 16 N -0.715 5.715 17 C 0.251 3.749 18 C -0.544 4.544 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.110 4.110 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.384 0.616 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.353 0.647 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.390 0.610 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.266 0.734 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.229 15.122 9.975 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.073 3.927 4 C -0.218 4.218 5 C -0.126 4.126 6 C 0.022 3.978 7 O -0.304 6.304 8 C -0.053 4.053 9 C 0.019 3.981 10 H 0.109 0.891 11 C -0.235 4.235 12 N -0.299 5.299 13 C -0.092 4.092 14 C 0.280 3.720 15 O -0.420 6.420 16 N -0.364 5.364 17 C 0.130 3.870 18 C -0.582 4.582 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.128 4.128 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.239 0.761 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.174 0.826 37 H 0.114 0.886 38 H 0.074 0.926 39 H 0.222 0.778 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.076 0.924 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.915 13.974 9.933 26.278 hybrid contribution 1.434 0.794 -0.227 1.654 sum -18.482 14.768 9.706 25.571 Atomic orbital electron populations 1.23047 0.78604 1.03986 1.01115 1.86145 1.21155 1.26729 1.88674 1.19052 0.92374 0.84171 0.97062 1.21065 0.99948 0.91867 1.08947 1.21078 0.93672 0.97619 1.00264 1.18087 0.89959 0.84401 1.05369 1.84872 1.79937 1.32437 1.33201 1.19871 0.95365 0.91736 0.98378 1.20269 0.89829 0.93431 0.94566 0.89090 1.22457 1.01286 1.03051 0.96737 1.60234 1.22680 1.07004 1.39938 1.21865 0.90233 0.97347 0.99746 1.20334 0.82168 0.89819 0.79677 1.90671 1.57838 1.35037 1.58499 1.46443 1.16906 1.15147 1.57896 1.19081 0.93540 0.80729 0.93619 1.21194 1.01426 0.96452 1.39144 0.91975 1.24956 0.98502 0.94849 0.95731 1.69968 1.38203 1.00920 1.43188 0.86475 0.83472 0.77612 0.79338 1.20091 1.21076 1.20066 1.20242 0.90919 0.98708 1.02978 0.92711 0.88214 0.92821 0.85360 0.85379 0.76072 0.92171 0.92085 0.91300 0.82648 0.88578 0.92621 0.77813 0.95614 0.95545 0.92389 0.83839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.69 10.50 -19.68 -0.21 -3.90 16 3 C 0.12 1.41 6.68 -39.24 -0.26 1.15 16 4 C -0.20 -1.95 9.03 -39.45 -0.36 -2.31 16 5 C -0.11 -1.03 9.98 -39.45 -0.39 -1.43 16 6 C 0.07 0.70 6.68 -39.24 -0.26 0.44 16 7 O -0.50 -4.40 12.63 -19.70 -0.25 -4.65 16 8 C -0.05 -0.61 5.07 -104.49 -0.53 -1.14 16 9 C 0.13 1.42 2.52 -68.86 -0.17 1.25 16 10 H 0.09 0.91 7.34 -51.93 -0.38 0.53 16 11 C -0.18 -1.76 9.14 37.16 0.34 -1.42 16 12 N -0.67 -9.07 4.88 -109.22 -0.53 -9.60 16 13 C 0.04 0.56 5.97 -4.97 -0.03 0.53 16 14 C 0.50 9.78 7.87 -10.99 -0.09 9.70 16 15 O -0.54 -13.07 16.20 5.56 0.09 -12.98 16 16 N -0.71 -14.91 5.55 -61.47 -0.34 -15.25 16 17 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 18 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 19 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 22 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C -0.11 -1.41 9.26 -39.45 -0.37 -1.77 16 27 H 0.05 0.33 7.67 -51.93 -0.40 -0.06 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 30 H 0.13 0.94 6.29 -52.49 -0.33 0.61 16 31 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.38 1.87 9.06 45.56 0.41 2.28 16 33 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 34 H 0.06 0.57 7.46 -51.93 -0.39 0.18 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.35 5.04 7.60 -39.29 -0.30 4.75 16 37 H 0.10 1.16 8.05 -51.93 -0.42 0.74 16 38 H 0.06 0.65 7.44 -51.93 -0.39 0.27 16 39 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.14 2.00 6.89 -52.49 -0.36 1.64 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -34.53 364.51 -6.96 -41.49 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.35 Total: 9.64 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.57 Total: -0.59 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.14 Total: -50.35 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.37 Total: -21.53 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.53 -6.96 -41.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775369668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.465 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds