Wall clock time and date at job start Tue Mar 31 2020 09:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35980 * 117.00237 * 2 1 4 4 C 1.38718 * 119.99819 * 0.18532 * 3 2 1 5 5 C 1.38108 * 120.00163 * 180.23352 * 4 3 2 6 6 C 1.38722 * 119.99649 * 359.83640 * 5 4 3 7 7 O 1.35987 * 119.99879 * 179.97438 * 6 5 4 8 8 C 1.38675 * 120.00043 * 359.95862 * 6 5 4 9 9 C 1.50708 * 120.00001 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47033 * 325.02343 * 9 8 6 11 11 C 1.53003 * 109.46775 * 85.01957 * 9 8 6 12 12 N 1.46891 * 109.46929 * 205.01796 * 9 8 6 13 13 C 1.46909 * 110.99938 * 155.00106 * 12 9 8 14 14 C 1.50692 * 109.47263 * 180.02562 * 13 12 9 15 15 O 1.21280 * 120.00565 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99956 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00184 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47203 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00333 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99816 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00218 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99810 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47418 * 59.99776 * 22 20 18 24 24 H 1.48501 * 109.47250 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47095 * 299.99692 * 22 20 18 26 26 C 1.38153 * 120.00134 * 359.97438 * 8 6 5 27 27 H 1.08990 * 109.47316 * 59.99995 * 1 2 3 28 28 H 1.09000 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46711 * 299.99515 * 1 2 3 30 30 H 1.07999 * 120.00037 * 0.04882 * 4 3 2 31 31 H 1.08001 * 120.00515 * 179.81296 * 5 4 3 32 32 H 0.96703 * 114.00049 * 269.97820 * 7 6 5 33 33 H 1.09002 * 109.47445 * 60.00240 * 11 9 8 34 34 H 1.09007 * 109.46972 * 180.02562 * 11 9 8 35 35 H 1.09003 * 109.47434 * 299.99751 * 11 9 8 36 36 H 1.00897 * 111.00290 * 278.95420 * 12 9 8 37 37 H 1.08998 * 109.46711 * 300.00466 * 13 12 9 38 38 H 1.09000 * 109.46911 * 59.99794 * 13 12 9 39 39 H 0.97005 * 120.00531 * 359.97438 * 16 14 13 40 40 H 1.09005 * 109.47225 * 299.99775 * 17 16 14 41 41 H 1.09000 * 109.47158 * 59.99895 * 17 16 14 42 42 H 0.97003 * 120.00094 * 180.02562 * 21 20 18 43 43 H 1.08002 * 119.99805 * 179.97438 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0039 5 6 1.9178 3.6055 -0.0010 6 6 3.3032 3.6781 -0.0063 7 8 3.9205 4.8897 -0.0117 8 6 4.0584 2.5150 -0.0059 9 6 5.5634 2.5939 -0.0123 10 1 5.8797 3.4520 -0.6053 11 6 6.0720 2.7499 1.4223 12 7 6.1156 1.3645 -0.5966 13 6 7.4499 1.6038 -1.1627 14 6 7.9827 0.3232 -1.7520 15 8 7.3167 -0.6893 -1.7047 16 7 9.1996 0.3029 -2.3307 17 6 9.7178 -0.9422 -2.9031 18 6 11.0866 -0.6966 -3.4839 19 1 11.5263 0.2885 -3.4323 20 6 11.7770 -1.7292 -4.0822 21 7 11.2413 -2.9287 -4.1456 22 14 13.4739 -1.4250 -4.8015 23 1 14.3887 -0.9550 -3.7303 24 1 13.9991 -2.6870 -5.3818 25 1 13.3831 -0.3913 -5.8638 26 6 3.4312 1.2841 0.0003 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2124 2.3184 0.0077 31 1 1.3297 4.5113 -0.0010 32 1 4.0961 5.2378 -0.8966 33 1 5.7556 1.8918 2.0153 34 1 7.1605 2.8074 1.4176 35 1 5.6622 3.6622 1.8558 36 1 6.1398 0.6199 0.0839 37 1 7.3829 2.3621 -1.9428 38 1 8.1214 1.9495 -0.3767 39 1 9.7325 1.1125 -2.3683 40 1 9.7845 -1.7006 -2.1230 41 1 9.0466 -1.2876 -3.6893 42 1 11.7272 -3.6553 -4.5661 43 1 4.0195 0.3783 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775369668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:47 Heat of formation + Delta-G solvation = -120.272721 kcal Electronic energy + Delta-G solvation = -24626.898297 eV Core-core repulsion = 20864.418817 eV Total energy + Delta-G solvation = -3762.479480 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.40311 -40.50640 -39.56760 -37.70233 -36.49573 -36.05855 -34.33512 -32.78748 -31.08456 -29.79280 -29.27425 -27.93522 -26.96494 -24.72391 -24.26439 -23.09774 -21.53934 -21.36643 -19.46205 -18.98379 -18.56068 -17.63120 -17.47965 -17.07715 -16.75057 -16.66053 -16.29146 -16.19438 -15.61395 -15.42118 -15.19276 -14.82353 -14.59144 -14.32672 -14.14468 -13.97407 -13.79829 -13.61703 -13.31555 -13.17006 -12.93166 -12.92465 -12.70509 -12.64292 -12.34507 -12.23221 -12.15187 -11.69552 -11.50500 -11.23684 -10.78517 -10.71561 -9.84707 -9.80462 -9.41317 -8.95255 -8.28308 -6.45221 0.29602 0.37970 1.43426 1.47726 1.55877 1.81294 2.29249 2.40155 2.49161 2.65890 3.06377 3.24638 3.40920 3.74015 3.86718 3.97724 4.12312 4.25162 4.28062 4.31925 4.38834 4.40249 4.49605 4.53948 4.62248 4.72692 4.78874 4.88427 5.07122 5.12255 5.17683 5.24724 5.25398 5.35503 5.49521 5.50935 5.63679 5.71498 5.85837 6.02286 6.26405 6.45648 6.66216 6.93523 6.96226 7.24486 7.54541 8.83771 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.002467 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.162352 B =11349.363014 C =12299.011677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.343 6.343 3 C 0.101 3.899 4 C -0.195 4.195 5 C -0.107 4.107 6 C 0.069 3.931 7 O -0.498 6.498 8 C -0.064 4.064 9 C 0.134 3.866 10 H 0.108 0.892 11 C -0.170 4.170 12 N -0.683 5.683 13 C 0.058 3.942 14 C 0.492 3.508 15 O -0.593 6.593 16 N -0.708 5.708 17 C 0.267 3.733 18 C -0.556 4.556 19 H 0.085 0.915 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.986 3.014 23 H -0.261 1.261 24 H -0.287 1.287 25 H -0.261 1.261 26 C -0.136 4.136 27 H 0.066 0.934 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.404 0.596 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.345 0.655 37 H 0.124 0.876 38 H 0.089 0.911 39 H 0.409 0.591 40 H -0.014 1.014 41 H -0.016 1.016 42 H 0.268 0.732 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.986 18.585 10.054 28.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.258 6.258 3 C 0.056 3.944 4 C -0.213 4.213 5 C -0.125 4.125 6 C 0.023 3.977 7 O -0.310 6.310 8 C -0.065 4.065 9 C 0.025 3.975 10 H 0.126 0.874 11 C -0.229 4.229 12 N -0.315 5.315 13 C -0.074 4.074 14 C 0.279 3.721 15 O -0.474 6.474 16 N -0.359 5.359 17 C 0.144 3.856 18 C -0.594 4.594 19 H 0.103 0.897 20 C -0.198 4.198 21 N -0.571 5.571 22 Si 0.809 3.191 23 H -0.186 1.186 24 H -0.212 1.212 25 H -0.186 1.186 26 C -0.155 4.155 27 H 0.084 0.916 28 H 0.131 0.869 29 H 0.087 0.913 30 H 0.172 0.828 31 H 0.172 0.828 32 H 0.262 0.738 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.164 0.836 37 H 0.142 0.858 38 H 0.106 0.894 39 H 0.245 0.755 40 H 0.004 0.996 41 H 0.002 0.998 42 H 0.077 0.923 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.680 17.515 10.019 28.185 hybrid contribution 1.230 -0.285 -0.223 1.282 sum -18.450 17.229 9.795 27.078 Atomic orbital electron populations 1.23332 0.76456 1.05394 1.02383 1.86103 1.23560 1.27237 1.88858 1.19228 0.92345 0.85039 0.97761 1.21336 1.01154 0.91130 1.07712 1.21405 0.93611 0.98437 0.99093 1.18125 0.90346 0.84464 1.04716 1.84824 1.79764 1.31472 1.34960 1.19973 0.95787 0.91807 0.98937 1.20317 0.89482 0.92475 0.95224 0.87371 1.22391 1.01782 1.02799 0.95898 1.60216 1.22628 1.08168 1.40508 1.21796 0.90787 0.93755 1.01076 1.21459 0.81006 0.91409 0.78263 1.90651 1.59003 1.37652 1.60091 1.46164 1.17846 1.13995 1.57927 1.18500 0.93379 0.82360 0.91320 1.21605 1.01367 0.97567 1.38825 0.89656 1.26098 1.03342 0.94344 0.95977 1.70142 1.40388 1.02236 1.44334 0.85197 0.77480 0.77616 0.78855 1.18570 1.21217 1.18578 1.20211 0.91661 0.98507 1.05132 0.91572 0.86932 0.91270 0.82827 0.82816 0.73828 0.93133 0.91138 0.90824 0.83578 0.85792 0.89371 0.75509 0.99639 0.99798 0.92280 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.32 10.50 -93.33 -0.98 -9.30 16 3 C 0.10 2.44 6.68 22.49 0.15 2.59 16 4 C -0.19 -3.50 9.03 22.35 0.20 -3.30 16 5 C -0.11 -1.79 9.98 22.35 0.22 -1.57 16 6 C 0.07 1.30 6.68 22.49 0.15 1.45 16 7 O -0.50 -7.34 12.63 -93.41 -1.18 -8.52 16 8 C -0.06 -1.44 5.07 -19.78 -0.10 -1.54 16 9 C 0.13 2.76 2.52 44.17 0.11 2.87 16 10 H 0.11 1.83 7.34 -2.39 -0.02 1.81 16 11 C -0.17 -3.11 9.14 71.98 0.66 -2.45 16 12 N -0.68 -18.39 4.88 -499.46 -2.44 -20.82 16 13 C 0.06 1.49 5.97 85.55 0.51 2.00 16 14 C 0.49 19.61 7.87 87.66 0.69 20.30 16 15 O -0.59 -30.05 16.20 -3.03 -0.05 -30.10 16 16 N -0.71 -29.75 5.55 -466.79 -2.59 -32.34 16 17 C 0.27 14.86 5.43 85.63 0.46 15.33 16 18 C -0.56 -30.34 9.28 25.60 0.24 -30.10 16 19 H 0.09 4.16 7.60 -2.91 -0.02 4.13 16 20 C 0.00 0.10 5.46 84.65 0.46 0.57 16 21 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 22 Si 0.99 42.39 29.54 68.60 2.03 44.42 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 24 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 26 C -0.14 -3.64 9.26 22.35 0.21 -3.43 16 27 H 0.07 0.72 7.67 -2.39 -0.02 0.71 16 28 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 0.70 7.65 -2.39 -0.02 0.68 16 30 H 0.15 1.86 6.29 -2.91 -0.02 1.84 16 31 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.40 2.55 9.06 -74.06 -0.67 1.88 16 33 H 0.05 1.01 8.13 -2.39 -0.02 0.99 16 34 H 0.07 1.14 7.46 -2.38 -0.02 1.13 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.34 10.24 7.60 -89.70 -0.68 9.56 16 37 H 0.12 2.58 8.05 -2.39 -0.02 2.56 16 38 H 0.09 1.77 7.44 -2.39 -0.02 1.75 16 39 H 0.41 13.82 8.32 -92.70 -0.77 13.05 16 40 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16 41 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 42 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.12 3.66 6.89 -2.91 -0.02 3.64 16 Total: -1.00 -79.21 364.51 -0.91 -80.12 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -1.06 Total: 29.13 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 5.08 Total: 4.06 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -4.74 Total: -109.81 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -2.21 Total: -47.92 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -79.21 -0.91 -80.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775369668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.153 kcal (2) G-P(sol) polarization free energy of solvation -79.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds