Wall clock time and date at job start Tue Mar 31 2020 09:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00259 * 2 1 4 4 C 1.52998 * 109.47419 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47111 * 185.00257 * 4 3 2 6 6 C 1.53005 * 109.46712 * 304.99761 * 4 3 2 7 7 N 1.46496 * 109.47286 * 64.99712 * 4 3 2 8 8 N 1.40104 * 120.00089 * 149.99888 * 7 4 3 9 9 C 1.29807 * 119.99967 * 180.02562 * 8 7 4 10 10 C 1.47385 * 120.00026 * 180.02562 * 9 8 7 11 11 C 1.39819 * 120.06303 * 359.97438 * 10 9 8 12 12 C 1.37785 * 120.01360 * 179.97438 * 11 10 9 13 13 C 1.38943 * 120.14419 * 0.02562 * 12 11 10 14 14 O 1.35719 * 119.93224 * 180.02562 * 13 12 11 15 15 C 1.34789 * 117.00223 * 354.38861 * 14 13 12 16 16 H 1.07997 * 120.00206 * 5.05917 * 15 14 13 17 17 C 1.38594 * 120.00085 * 185.06303 * 15 14 13 18 18 N 1.31595 * 119.99912 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00340 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46842 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47333 * 120.00030 * 19 17 15 22 22 H 1.48507 * 109.47101 * 240.00221 * 19 17 15 23 23 C 1.39518 * 120.13156 * 0.02562 * 13 12 11 24 24 O 1.35953 * 120.00863 * 179.97438 * 23 13 12 25 25 C 1.42901 * 116.99910 * 180.02562 * 24 23 13 26 26 C 1.38211 * 119.98283 * 359.69587 * 23 13 12 27 27 H 1.09005 * 109.46580 * 299.99681 * 1 2 3 28 28 H 1.08994 * 109.47495 * 59.99825 * 1 2 3 29 29 H 1.08997 * 109.46905 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47196 * 59.99863 * 3 2 1 31 31 H 1.09009 * 109.47103 * 300.00217 * 3 2 1 32 32 H 1.09001 * 109.46927 * 60.00384 * 6 4 3 33 33 H 1.09003 * 109.46921 * 179.97438 * 6 4 3 34 34 H 1.08994 * 109.47439 * 299.99904 * 6 4 3 35 35 H 0.97001 * 120.00319 * 330.00512 * 7 4 3 36 36 H 1.08001 * 120.00352 * 359.97438 * 9 8 7 37 37 H 1.08004 * 119.99512 * 0.02562 * 11 10 9 38 38 H 1.08004 * 119.92739 * 180.02562 * 12 11 10 39 39 H 0.96999 * 119.99756 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.47089 * 180.02562 * 25 24 23 41 41 H 1.08999 * 109.46901 * 300.00387 * 25 24 23 42 42 H 1.09003 * 109.47529 * 60.00269 * 25 24 23 43 43 H 1.08004 * 120.07146 * 180.31764 * 26 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1765 0.0890 6 6 3.9790 0.3194 1.1807 7 7 3.9757 0.5644 -1.2527 8 7 5.2289 0.8852 -1.7907 9 6 5.6188 0.3360 -2.9003 10 6 6.9373 0.6731 -3.4660 11 6 7.7692 1.5847 -2.8088 12 6 9.0019 1.8987 -3.3382 13 6 9.4213 1.3116 -4.5256 14 8 10.6366 1.6236 -5.0430 15 6 11.3360 2.5934 -4.4207 16 1 10.9614 3.0265 -3.5051 17 6 12.5357 3.0348 -4.9560 18 7 12.9919 2.5074 -6.0721 19 14 13.5047 4.3793 -4.0941 20 1 12.7809 4.8029 -2.8686 21 1 14.8465 3.8624 -3.7234 22 1 13.6565 5.5419 -5.0056 23 6 8.5957 0.4019 -5.1870 24 8 9.0085 -0.1707 -6.3489 25 6 8.1119 -1.0925 -6.9722 26 6 7.3606 0.0787 -4.6577 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6887 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.5359 -0.6725 1.0911 33 1 5.0656 0.2329 1.1801 34 1 3.6515 0.7808 2.1123 35 1 3.3996 -0.0684 -1.7093 36 1 4.9773 -0.3687 -3.4087 37 1 7.4457 2.0423 -1.8854 38 1 9.6434 2.6028 -2.8292 39 1 13.8314 2.8166 -6.4469 40 1 8.5628 -1.4752 -7.8878 41 1 7.9117 -1.9206 -6.2924 42 1 7.1774 -0.5850 -7.2116 43 1 6.7225 -0.6292 -5.1658 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777900526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:07 Heat of formation + Delta-G solvation = -36.899651 kcal Electronic energy + Delta-G solvation = -24320.417170 eV Core-core repulsion = 20561.553017 eV Total energy + Delta-G solvation = -3758.864153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.53768 -38.68190 -37.49666 -36.97032 -35.80923 -33.74343 -32.28104 -30.05909 -29.45937 -27.91319 -27.63122 -26.39351 -25.87444 -25.29010 -22.71223 -21.57763 -20.94727 -20.02031 -18.03852 -17.51498 -17.13217 -16.64849 -16.34333 -15.74271 -15.59477 -15.10596 -15.00439 -14.65843 -14.51591 -13.83536 -13.80229 -13.63753 -13.41655 -13.29781 -13.13614 -12.54840 -12.27414 -12.09428 -12.07147 -11.66852 -11.50701 -11.41313 -11.20077 -11.18645 -10.98311 -10.91886 -10.64118 -10.39408 -10.27186 -10.06610 -9.77032 -9.36952 -8.87862 -8.12322 -7.70922 -6.66152 -6.44343 -3.98066 1.67341 2.26883 3.04381 3.07228 3.15550 3.21473 3.24239 3.43479 3.96817 4.05427 4.57848 4.63720 4.80371 4.92103 4.98619 5.05537 5.06336 5.16016 5.24126 5.25823 5.29990 5.37621 5.46151 5.54786 5.59903 5.67392 5.78674 5.87761 5.94899 5.97618 6.22553 6.23900 6.40783 6.47508 6.63113 6.74292 6.99446 7.19942 7.26732 7.31932 7.44508 7.64147 7.96475 8.20173 8.76245 8.99869 9.70467 10.72476 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.002614 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.031738 B =10709.565862 C =12077.500910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.051 3.949 4 C 0.190 3.810 5 H 0.091 0.909 6 C -0.163 4.163 7 N -0.664 5.664 8 N -0.249 5.249 9 C 0.096 3.904 10 C -0.117 4.117 11 C -0.057 4.057 12 C -0.220 4.220 13 C 0.144 3.856 14 O -0.158 6.158 15 C -0.389 4.389 16 H 0.095 0.905 17 C 0.039 3.961 18 N -0.853 5.853 19 Si 0.942 3.058 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.276 1.276 23 C 0.053 3.947 24 O -0.303 6.303 25 C 0.031 3.969 26 C -0.143 4.143 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.374 0.626 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.135 0.865 39 H 0.270 0.730 40 H 0.090 0.910 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.400 -3.870 8.886 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.027 4.027 4 C 0.084 3.916 5 H 0.109 0.891 6 C -0.222 4.222 7 N -0.402 5.402 8 N -0.057 5.057 9 C -0.114 4.114 10 C -0.120 4.120 11 C -0.077 4.077 12 C -0.240 4.240 13 C 0.088 3.912 14 O -0.060 6.060 15 C -0.465 4.465 16 H 0.113 0.887 17 C -0.166 4.166 18 N -0.487 5.487 19 Si 0.767 3.233 20 H -0.189 1.189 21 H -0.201 1.201 22 H -0.201 1.201 23 C 0.008 3.992 24 O -0.217 6.217 25 C -0.065 4.065 26 C -0.164 4.164 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.212 0.788 36 H 0.114 0.886 37 H 0.137 0.863 38 H 0.153 0.847 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.588 -3.336 9.341 21.956 hybrid contribution -0.726 -0.141 -0.277 0.790 sum -20.314 -3.477 9.063 22.514 Atomic orbital electron populations 1.22740 0.81097 1.02760 0.99943 1.87900 1.19584 1.27727 1.95393 1.22960 0.93754 0.85077 1.00879 1.20535 0.90155 0.97402 0.83499 0.89062 1.22220 1.01930 1.00987 0.97089 1.47858 1.14896 1.51473 1.25993 1.74203 0.99766 1.19897 1.11801 1.23791 0.96007 0.98528 0.93123 1.17541 0.93264 1.04001 0.97227 1.20855 0.92710 0.95713 0.98469 1.20883 0.98589 1.06712 0.97820 1.18820 0.86570 0.93770 0.92074 1.84031 1.22288 1.49429 1.50235 1.21465 1.02929 1.14163 1.07911 0.88738 1.25333 0.96604 0.98524 0.96172 1.70096 1.20294 1.40216 1.18114 0.85628 0.79280 0.79438 0.78980 1.18950 1.20122 1.20123 1.17991 0.93433 0.99118 0.88678 1.86243 1.43220 1.57170 1.35051 1.22887 0.94113 0.91956 0.97532 1.20668 0.95302 1.03021 0.97451 0.94081 0.94119 0.89653 0.91912 0.92720 0.91970 0.92178 0.92490 0.78841 0.88641 0.86298 0.84698 0.91995 0.89148 0.93583 0.93569 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.55 9.54 -35.23 -0.34 -3.89 16 3 C 0.05 0.43 5.71 37.16 0.21 0.64 16 4 C 0.19 1.99 3.65 -67.93 -0.25 1.75 16 5 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 6 C -0.16 -1.68 9.32 37.16 0.35 -1.33 16 7 N -0.66 -8.49 6.10 -4.89 -0.03 -8.52 16 8 N -0.25 -3.87 10.60 32.14 0.34 -3.53 16 9 C 0.10 1.49 10.74 -14.69 -0.16 1.33 16 10 C -0.12 -2.11 5.87 -105.03 -0.62 -2.73 16 11 C -0.06 -1.10 9.57 -39.16 -0.37 -1.47 16 12 C -0.22 -4.85 9.14 -39.49 -0.36 -5.21 16 13 C 0.14 3.56 6.67 -38.84 -0.26 3.30 16 14 O -0.16 -4.60 9.53 -14.35 -0.14 -4.73 16 15 C -0.39 -10.87 9.48 30.86 0.29 -10.58 16 16 H 0.10 2.43 5.19 -52.49 -0.27 2.15 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.85 -25.14 13.67 55.48 0.76 -24.38 16 19 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 23 C 0.05 1.16 6.70 -39.11 -0.26 0.90 16 24 O -0.30 -6.58 10.28 -34.21 -0.35 -6.93 16 25 C 0.03 0.46 9.81 101.05 0.99 1.45 16 26 C -0.14 -2.61 8.77 -39.03 -0.34 -2.95 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 32 H 0.06 0.68 7.56 -51.93 -0.39 0.29 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.37 4.51 8.37 -182.59 -1.53 2.98 16 36 H 0.10 1.26 8.02 -52.49 -0.42 0.84 16 37 H 0.12 2.13 7.54 -52.48 -0.40 1.74 16 38 H 0.14 2.93 5.62 -52.48 -0.29 2.63 16 39 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.60 7.64 -51.93 -0.40 0.20 16 42 H 0.05 0.60 7.67 -51.93 -0.40 0.21 16 43 H 0.12 1.79 6.29 -52.48 -0.33 1.46 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -32.66 368.01 -6.36 -39.02 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.37 Total: 4.60 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 0.24 Total: -12.62 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 1.07 Total: -36.44 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.82 Total: -15.55 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.66 -6.36 -39.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777900526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.120 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds