Wall clock time and date at job start Tue Mar 31 2020 09:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00259 * 2 1 4 4 C 1.52998 * 109.47419 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47111 * 185.00257 * 4 3 2 6 6 C 1.53005 * 109.46712 * 304.99761 * 4 3 2 7 7 N 1.46496 * 109.47286 * 64.99712 * 4 3 2 8 8 N 1.40104 * 120.00089 * 149.99888 * 7 4 3 9 9 C 1.29807 * 119.99967 * 180.02562 * 8 7 4 10 10 C 1.47385 * 120.00026 * 180.02562 * 9 8 7 11 11 C 1.39819 * 120.06303 * 359.97438 * 10 9 8 12 12 C 1.37785 * 120.01360 * 179.97438 * 11 10 9 13 13 C 1.38943 * 120.14419 * 0.02562 * 12 11 10 14 14 O 1.35719 * 119.93224 * 180.02562 * 13 12 11 15 15 C 1.34789 * 117.00223 * 354.38861 * 14 13 12 16 16 H 1.07997 * 120.00206 * 5.05917 * 15 14 13 17 17 C 1.38594 * 120.00085 * 185.06303 * 15 14 13 18 18 N 1.31595 * 119.99912 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00340 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46842 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47333 * 120.00030 * 19 17 15 22 22 H 1.48507 * 109.47101 * 240.00221 * 19 17 15 23 23 C 1.39518 * 120.13156 * 0.02562 * 13 12 11 24 24 O 1.35953 * 120.00863 * 179.97438 * 23 13 12 25 25 C 1.42901 * 116.99910 * 180.02562 * 24 23 13 26 26 C 1.38211 * 119.98283 * 359.69587 * 23 13 12 27 27 H 1.09005 * 109.46580 * 299.99681 * 1 2 3 28 28 H 1.08994 * 109.47495 * 59.99825 * 1 2 3 29 29 H 1.08997 * 109.46905 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47196 * 59.99863 * 3 2 1 31 31 H 1.09009 * 109.47103 * 300.00217 * 3 2 1 32 32 H 1.09001 * 109.46927 * 60.00384 * 6 4 3 33 33 H 1.09003 * 109.46921 * 179.97438 * 6 4 3 34 34 H 1.08994 * 109.47439 * 299.99904 * 6 4 3 35 35 H 0.97001 * 120.00319 * 330.00512 * 7 4 3 36 36 H 1.08001 * 120.00352 * 359.97438 * 9 8 7 37 37 H 1.08004 * 119.99512 * 0.02562 * 11 10 9 38 38 H 1.08004 * 119.92739 * 180.02562 * 12 11 10 39 39 H 0.96999 * 119.99756 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.47089 * 180.02562 * 25 24 23 41 41 H 1.08999 * 109.46901 * 300.00387 * 25 24 23 42 42 H 1.09003 * 109.47529 * 60.00269 * 25 24 23 43 43 H 1.08004 * 120.07146 * 180.31764 * 26 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1765 0.0890 6 6 3.9790 0.3194 1.1807 7 7 3.9757 0.5644 -1.2527 8 7 5.2289 0.8852 -1.7907 9 6 5.6188 0.3360 -2.9003 10 6 6.9373 0.6731 -3.4660 11 6 7.7692 1.5847 -2.8088 12 6 9.0019 1.8987 -3.3382 13 6 9.4213 1.3116 -4.5256 14 8 10.6366 1.6236 -5.0430 15 6 11.3360 2.5934 -4.4207 16 1 10.9614 3.0265 -3.5051 17 6 12.5357 3.0348 -4.9560 18 7 12.9919 2.5074 -6.0721 19 14 13.5047 4.3793 -4.0941 20 1 12.7809 4.8029 -2.8686 21 1 14.8465 3.8624 -3.7234 22 1 13.6565 5.5419 -5.0056 23 6 8.5957 0.4019 -5.1870 24 8 9.0085 -0.1707 -6.3489 25 6 8.1119 -1.0925 -6.9722 26 6 7.3606 0.0787 -4.6577 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6887 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.5359 -0.6725 1.0911 33 1 5.0656 0.2329 1.1801 34 1 3.6515 0.7808 2.1123 35 1 3.3996 -0.0684 -1.7093 36 1 4.9773 -0.3687 -3.4087 37 1 7.4457 2.0423 -1.8854 38 1 9.6434 2.6028 -2.8292 39 1 13.8314 2.8166 -6.4469 40 1 8.5628 -1.4752 -7.8878 41 1 7.9117 -1.9206 -6.2924 42 1 7.1774 -0.5850 -7.2116 43 1 6.7225 -0.6292 -5.1658 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777900526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:07 Heat of formation + Delta-G solvation = -59.544608 kcal Electronic energy + Delta-G solvation = -24321.399129 eV Core-core repulsion = 20561.553017 eV Total energy + Delta-G solvation = -3759.846112 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.19235 -39.40040 -39.21203 -38.28025 -37.09127 -34.86386 -34.18756 -31.50146 -31.01461 -29.15980 -28.24451 -27.70314 -27.24572 -26.47726 -24.17779 -23.19081 -21.84194 -21.43411 -19.85338 -19.17084 -18.33153 -17.61188 -17.15060 -17.02720 -16.72754 -16.59403 -16.27103 -16.18590 -15.53762 -15.46864 -15.18610 -15.11375 -14.85326 -14.55250 -14.00226 -13.91340 -13.44848 -13.41373 -13.12605 -12.91528 -12.79413 -12.71818 -12.63033 -12.44792 -12.12684 -12.04984 -11.98856 -11.95266 -11.64388 -11.35658 -10.87971 -10.78853 -10.63505 -9.64752 -9.10621 -8.42854 -8.21097 -6.06694 0.17507 0.62648 1.37727 1.43680 1.56526 1.77080 1.99294 2.20481 2.63388 2.84289 2.91721 3.21806 3.45051 3.83209 3.97171 4.04621 4.13590 4.36318 4.37588 4.39227 4.44393 4.50311 4.50396 4.53865 4.58698 4.59882 4.70177 4.77412 4.79956 4.87301 4.90218 4.94524 5.04207 5.17485 5.20875 5.39399 5.51634 5.65075 5.80180 5.99013 6.04970 6.17634 6.37537 6.68340 7.01247 7.61104 7.83374 8.80405 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.002614 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.031738 B =10709.565862 C =12077.500910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.058 3.942 4 C 0.182 3.818 5 H 0.091 0.909 6 C -0.156 4.156 7 N -0.655 5.655 8 N -0.252 5.252 9 C 0.079 3.921 10 C -0.085 4.085 11 C -0.070 4.070 12 C -0.215 4.215 13 C 0.093 3.907 14 O -0.217 6.217 15 C -0.411 4.411 16 H 0.104 0.896 17 C -0.025 4.025 18 N -0.918 5.918 19 Si 1.020 2.980 20 H -0.250 1.250 21 H -0.269 1.269 22 H -0.269 1.269 23 C 0.045 3.955 24 O -0.343 6.343 25 C 0.019 3.981 26 C -0.132 4.132 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.381 0.619 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.272 0.728 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.258 -4.254 10.819 26.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.020 4.020 4 C 0.076 3.924 5 H 0.109 0.891 6 C -0.215 4.215 7 N -0.393 5.393 8 N -0.060 5.060 9 C -0.131 4.131 10 C -0.088 4.088 11 C -0.090 4.090 12 C -0.234 4.234 13 C 0.041 3.959 14 O -0.123 6.123 15 C -0.487 4.487 16 H 0.121 0.879 17 C -0.222 4.222 18 N -0.556 5.556 19 Si 0.839 3.161 20 H -0.173 1.173 21 H -0.194 1.194 22 H -0.194 1.194 23 C 0.000 4.000 24 O -0.259 6.259 25 C -0.075 4.075 26 C -0.153 4.153 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.219 0.781 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.081 0.919 40 H 0.125 0.875 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -23.535 -3.746 11.312 26.379 hybrid contribution -0.103 -0.235 -0.687 0.733 sum -23.637 -3.980 10.625 26.219 Atomic orbital electron populations 1.22893 0.79600 1.03625 1.00829 1.87862 1.21234 1.28108 1.95593 1.22889 0.91864 0.85156 1.02107 1.20791 0.91948 0.97186 0.82442 0.89063 1.22139 1.00499 1.00805 0.98079 1.48034 1.13666 1.51217 1.26398 1.74079 1.01138 1.19237 1.11553 1.23645 0.95276 1.00285 0.93911 1.17942 0.93795 1.01005 0.96025 1.21026 0.91972 0.96702 0.99348 1.20975 0.99453 1.05989 0.97003 1.19466 0.86702 0.95953 0.93756 1.84004 1.24566 1.51471 1.52276 1.21925 1.03615 1.14710 1.08493 0.87875 1.26616 0.97508 1.01123 0.96966 1.70245 1.21411 1.43161 1.20736 0.84515 0.77522 0.75899 0.78157 1.17299 1.19385 1.19400 1.18306 0.94121 0.98599 0.89011 1.86197 1.45984 1.58514 1.35161 1.23288 0.94266 0.91647 0.98303 1.21047 0.94083 1.02945 0.97209 0.92871 0.93537 0.88915 0.89692 0.92473 0.92661 0.94113 0.90392 0.78058 0.85340 0.84695 0.85389 0.91921 0.87473 0.91378 0.91396 0.81872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -6.16 9.54 -148.98 -1.42 -7.58 16 3 C 0.06 0.75 5.71 71.98 0.41 1.16 16 4 C 0.18 3.23 3.65 44.99 0.16 3.40 16 5 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 6 C -0.16 -2.79 9.32 71.98 0.67 -2.12 16 7 N -0.65 -14.45 6.10 -169.39 -1.03 -15.48 16 8 N -0.25 -6.97 10.60 -52.21 -0.55 -7.52 16 9 C 0.08 2.15 10.74 87.40 0.94 3.09 16 10 C -0.08 -2.84 5.87 -20.13 -0.12 -2.96 16 11 C -0.07 -2.64 9.57 22.55 0.22 -2.43 16 12 C -0.21 -9.75 9.14 22.33 0.20 -9.54 16 13 C 0.09 4.84 6.67 22.75 0.15 5.00 16 14 O -0.22 -13.59 9.53 -8.01 -0.08 -13.67 16 15 C -0.41 -24.55 9.48 67.91 0.64 -23.90 16 16 H 0.10 5.62 5.19 -2.91 -0.02 5.61 16 17 C -0.02 -1.43 5.49 84.81 0.47 -0.96 16 18 N -0.92 -57.78 13.67 21.60 0.30 -57.48 16 19 Si 1.02 43.79 29.55 68.60 2.03 45.82 16 20 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 23 C 0.04 1.99 6.70 22.57 0.15 2.14 16 24 O -0.34 -15.21 10.28 -79.04 -0.81 -16.02 16 25 C 0.02 0.54 9.81 113.37 1.11 1.65 16 26 C -0.13 -4.49 8.77 22.62 0.20 -4.30 16 27 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.05 1.07 7.56 -2.39 -0.02 1.05 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.38 7.70 8.37 -213.32 -1.78 5.92 16 36 H 0.13 2.70 8.02 -2.91 -0.02 2.68 16 37 H 0.14 4.62 7.54 -2.91 -0.02 4.60 16 38 H 0.13 5.83 5.62 -2.91 -0.02 5.82 16 39 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 40 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.07 1.58 7.64 -2.39 -0.02 1.56 16 42 H 0.07 1.58 7.67 -2.39 -0.02 1.56 16 43 H 0.16 4.10 6.29 -2.91 -0.02 4.08 16 Total: -1.00 -77.61 368.01 4.13 -73.48 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -0.76 Total: 26.73 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 6.46 Total: -28.28 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -1.29 Total: -80.49 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -2.31 Total: -37.27 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -77.61 4.13 -73.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777900526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.935 kcal (2) G-P(sol) polarization free energy of solvation -77.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds