Wall clock time and date at job start Tue Mar 31 2020 09:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42903 * 113.99697 * 2 1 4 4 C 1.52998 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46879 * 174.99809 * 4 3 2 6 6 C 1.53002 * 109.46897 * 55.00154 * 4 3 2 7 7 N 1.46497 * 109.47171 * 295.00245 * 4 3 2 8 8 N 1.40099 * 119.99721 * 210.00114 * 7 4 3 9 9 C 1.29814 * 120.00026 * 179.97438 * 8 7 4 10 10 C 1.47386 * 120.00104 * 179.97438 * 9 8 7 11 11 C 1.39815 * 120.06694 * 0.02562 * 10 9 8 12 12 C 1.37777 * 120.01568 * 179.97438 * 11 10 9 13 13 C 1.38952 * 120.14438 * 359.97438 * 12 11 10 14 14 O 1.35718 * 119.93048 * 180.02562 * 13 12 11 15 15 C 1.34787 * 117.00183 * 354.38140 * 14 13 12 16 16 H 1.08001 * 120.00347 * 5.07076 * 15 14 13 17 17 C 1.38603 * 119.99781 * 185.06275 * 15 14 13 18 18 N 1.31598 * 119.99939 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47047 * 60.00118 * 19 17 15 21 21 H 1.48502 * 109.46815 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46754 * 299.99686 * 19 17 15 23 23 C 1.39521 * 120.12848 * 0.02562 * 13 12 11 24 24 O 1.35947 * 120.00399 * 180.02562 * 23 13 12 25 25 C 1.42904 * 116.99750 * 180.02562 * 24 23 13 26 26 C 1.38205 * 119.98399 * 359.78572 * 23 13 12 27 27 H 1.09005 * 109.46862 * 60.00458 * 1 2 3 28 28 H 1.09004 * 109.46781 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47022 * 299.99928 * 1 2 3 30 30 H 1.09002 * 109.47159 * 59.99950 * 3 2 1 31 31 H 1.09005 * 109.47105 * 300.00055 * 3 2 1 32 32 H 1.09001 * 109.46726 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.47074 * 299.99536 * 6 4 3 34 34 H 1.09000 * 109.47024 * 60.00164 * 6 4 3 35 35 H 0.96996 * 120.00211 * 29.99862 * 7 4 3 36 36 H 1.08003 * 119.99928 * 359.72957 * 9 8 7 37 37 H 1.08001 * 119.99076 * 359.97438 * 11 10 9 38 38 H 1.08000 * 119.92547 * 179.97438 * 12 11 10 39 39 H 0.96996 * 120.00000 * 180.02562 * 18 17 15 40 40 H 1.08993 * 109.47087 * 60.00043 * 25 24 23 41 41 H 1.09003 * 109.47198 * 180.02562 * 25 24 23 42 42 H 1.09008 * 109.47165 * 300.00025 * 25 24 23 43 43 H 1.07997 * 120.06989 * 180.25043 * 26 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9785 2.1766 -0.0890 6 6 3.9790 0.3195 -1.1807 7 7 3.9757 0.5645 1.2527 8 7 5.2288 0.8854 1.7906 9 6 5.6188 0.3362 2.9003 10 6 6.9374 0.6733 3.4660 11 6 7.7691 1.5850 2.8088 12 6 9.0013 1.8998 3.3387 13 6 9.4204 1.3134 4.5267 14 8 10.6348 1.6271 5.0452 15 6 11.4308 2.4213 4.3020 16 1 11.0618 2.8443 3.3793 17 6 12.7230 2.6953 4.7220 18 7 13.1727 2.1796 5.8461 19 14 13.8260 3.7966 3.6925 20 1 13.2007 5.1368 3.5581 21 1 15.1483 3.9309 4.3548 22 1 14.0060 3.1970 2.3460 23 6 8.5952 0.4030 5.1876 24 8 9.0076 -0.1688 6.3500 25 6 8.1119 -1.0923 6.9721 26 6 7.3565 0.0863 4.6627 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 5.0656 0.2338 -1.1805 33 1 3.5360 -0.6724 -1.0911 34 1 3.6514 0.7810 -2.1123 35 1 3.3995 -0.0683 1.7093 36 1 4.9753 -0.3649 3.4112 37 1 7.4457 2.0425 1.8855 38 1 9.6428 2.6038 2.8297 39 1 14.0768 2.3716 6.1403 40 1 7.9143 -1.9209 6.2921 41 1 8.5620 -1.4735 7.8888 42 1 7.1761 -0.5866 7.2103 43 1 6.7150 -0.6152 5.1752 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777900535.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:11 Heat of formation + Delta-G solvation = -36.752908 kcal Electronic energy + Delta-G solvation = -24320.266702 eV Core-core repulsion = 20561.408913 eV Total energy + Delta-G solvation = -3758.857789 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.53632 -38.68092 -37.49557 -36.96851 -35.80799 -33.74157 -32.27918 -30.05741 -29.45859 -27.91170 -27.63008 -26.39235 -25.87390 -25.28621 -22.71033 -21.57617 -20.94626 -20.01916 -18.03579 -17.51332 -17.13080 -16.64668 -16.34248 -15.74145 -15.58973 -15.10539 -15.00113 -14.65874 -14.52531 -13.83860 -13.80004 -13.63897 -13.41111 -13.29423 -13.13730 -12.53486 -12.29429 -12.08829 -12.05053 -11.66483 -11.51920 -11.40053 -11.19290 -11.18167 -10.99288 -10.88799 -10.65917 -10.42637 -10.26957 -10.06611 -9.77094 -9.37500 -8.86701 -8.12170 -7.70785 -6.65976 -6.43887 -3.97748 1.67542 2.27098 3.04615 3.08777 3.15356 3.19179 3.24972 3.43538 3.97188 4.05560 4.57897 4.63879 4.80402 4.92111 4.98632 5.05514 5.06452 5.16334 5.24183 5.25965 5.30014 5.37712 5.46304 5.54878 5.60009 5.67522 5.78860 5.87900 5.94992 5.97791 6.22741 6.23998 6.40947 6.47643 6.63242 6.74277 6.99346 7.19957 7.26544 7.32015 7.44593 7.64303 7.96638 8.20300 8.76423 8.99984 9.70496 10.72732 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017901 B = 0.002616 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.767472 B =10700.137583 C =12089.278750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.051 3.949 4 C 0.190 3.810 5 H 0.091 0.909 6 C -0.163 4.163 7 N -0.664 5.664 8 N -0.249 5.249 9 C 0.096 3.904 10 C -0.117 4.117 11 C -0.057 4.057 12 C -0.221 4.221 13 C 0.143 3.857 14 O -0.157 6.157 15 C -0.390 4.390 16 H 0.094 0.906 17 C 0.040 3.960 18 N -0.854 5.854 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.269 1.269 23 C 0.053 3.947 24 O -0.303 6.303 25 C 0.031 3.969 26 C -0.143 4.143 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.374 0.626 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.135 0.865 39 H 0.271 0.729 40 H 0.046 0.954 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.565 -3.474 -8.596 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.027 4.027 4 C 0.084 3.916 5 H 0.109 0.891 6 C -0.222 4.222 7 N -0.402 5.402 8 N -0.057 5.057 9 C -0.114 4.114 10 C -0.121 4.121 11 C -0.077 4.077 12 C -0.240 4.240 13 C 0.087 3.913 14 O -0.059 6.059 15 C -0.466 4.466 16 H 0.112 0.888 17 C -0.166 4.166 18 N -0.487 5.487 19 Si 0.766 3.234 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.194 1.194 23 C 0.008 3.992 24 O -0.217 6.217 25 C -0.065 4.065 26 C -0.164 4.164 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.212 0.788 36 H 0.114 0.886 37 H 0.137 0.863 38 H 0.153 0.847 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.064 0.936 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.749 -2.935 -9.038 21.916 hybrid contribution -0.671 -0.255 0.182 0.740 sum -20.420 -3.189 -8.856 22.485 Atomic orbital electron populations 1.22742 0.81098 1.02761 0.99940 1.87903 1.19583 1.27721 1.95393 1.22960 0.93758 0.85077 1.00875 1.20534 0.90152 0.97400 0.83503 0.89066 1.22219 1.01936 1.00989 0.97083 1.47856 1.14912 1.51467 1.25985 1.74204 0.99772 1.19846 1.11857 1.23793 0.95991 0.98530 0.93129 1.17540 0.93307 1.04161 0.97055 1.20850 0.92690 0.95706 0.98487 1.20877 0.98490 1.06478 0.98181 1.18822 0.87595 0.92952 0.91883 1.84029 1.20719 1.59062 1.42103 1.21370 0.93732 1.25803 1.05665 0.88846 1.25330 0.96395 0.98006 0.96844 1.70075 1.17492 1.41108 1.20051 0.85764 0.78758 0.79645 0.79186 1.19409 1.20283 1.19398 1.17987 0.93762 0.98306 0.89172 1.86242 1.43334 1.57114 1.34997 1.22887 0.94092 0.91951 0.97558 1.20666 0.95052 1.03270 0.97449 0.94079 0.89653 0.94121 0.92724 0.91912 0.92173 0.91963 0.92497 0.78843 0.88645 0.86301 0.84712 0.91887 0.93554 0.89150 0.93598 0.86164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.55 9.54 -35.23 -0.34 -3.89 16 3 C 0.05 0.43 5.71 37.16 0.21 0.64 16 4 C 0.19 2.00 3.65 -67.93 -0.25 1.75 16 5 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 6 C -0.16 -1.68 9.32 37.16 0.35 -1.33 16 7 N -0.66 -8.50 6.10 -4.89 -0.03 -8.53 16 8 N -0.25 -3.88 10.60 32.15 0.34 -3.54 16 9 C 0.10 1.49 10.74 -14.68 -0.16 1.33 16 10 C -0.12 -2.12 5.87 -105.02 -0.62 -2.73 16 11 C -0.06 -1.10 9.57 -39.16 -0.37 -1.47 16 12 C -0.22 -4.85 9.14 -39.49 -0.36 -5.22 16 13 C 0.14 3.55 6.67 -38.84 -0.26 3.30 16 14 O -0.16 -4.58 9.53 -14.35 -0.14 -4.72 16 15 C -0.39 -10.90 9.48 30.87 0.29 -10.61 16 16 H 0.09 2.39 5.19 -52.49 -0.27 2.11 16 17 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 18 N -0.85 -25.14 13.67 55.48 0.76 -24.38 16 19 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 C 0.05 1.16 6.70 -39.12 -0.26 0.90 16 24 O -0.30 -6.58 10.28 -34.19 -0.35 -6.94 16 25 C 0.03 0.46 9.81 101.05 0.99 1.45 16 26 C -0.14 -2.61 8.77 -39.03 -0.34 -2.95 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.68 7.56 -51.93 -0.39 0.29 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.37 4.51 8.37 -182.60 -1.53 2.98 16 36 H 0.10 1.26 8.02 -52.48 -0.42 0.84 16 37 H 0.12 2.13 7.54 -52.49 -0.40 1.74 16 38 H 0.14 2.91 5.62 -52.49 -0.29 2.62 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.05 0.61 7.67 -51.93 -0.40 0.21 16 41 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 0.60 7.65 -51.92 -0.40 0.20 16 43 H 0.12 1.79 6.28 -52.49 -0.33 1.46 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -32.62 368.01 -6.36 -38.99 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.37 Total: 4.67 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 0.24 Total: -12.65 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 1.07 Total: -36.44 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.82 Total: -15.54 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.62 -6.36 -38.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777900535.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.235 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds